| heatmapTransitionProbs {chromstaR} | R Documentation |
Plot a heatmap of transition probabilities for a multiHMM model.
heatmapTransitionProbs( model = NULL, reorder.states = TRUE, transitionProbs = NULL )
model |
A |
reorder.states |
Whether or not to reorder the states. |
transitionProbs |
A matrix with transition probabilities where |
A ggplot object.
## Get an example multiHMM ##
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
package="chromstaR")
model <- get(load(file))
## Plot transition probabilites as heatmap
heatmapTransitionProbs(model, reorder.states=TRUE)