| transitionFrequencies {chromstaR} | R Documentation |
Get a table of transition frequencies between combinatorial states of different multiHMMs.
transitionFrequencies( multi.hmms = NULL, combined.hmm = NULL, zero.states = "[]", combstates = NULL )
multi.hmms |
A named list with |
combined.hmm |
A |
zero.states |
The string(s) which identifies the zero.states. |
combstates |
Alternative input instead of |
A data.frame with transition frequencies.
Aaron Taudt
## Get an example combinedMultiHMM
file <- system.file("data","combined_mode-differential.RData",
package="chromstaR")
model <- get(load(file))
freqs <- transitionFrequencies(combined.hmm=model)
freqs$table