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1. mlreview_notebooks mlreview_notebooks Public

   Notebooks for "A high bias low-variance introduction to Machine Learning for physicists."

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2. community-simulator community-simulator Public

   Simulate microbial community batch culture experiments.

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3. scTOP scTOP Public

   A package for identifying cell phenotype from single-cell RNA-sequencing data.

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4. crossfeeding-transition crossfeeding-transition Public

   Code and data to accompany Marsland et al. (2018) "Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities"

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5. typical-random-ecosystems typical-random-ecosystems Public

   This is the code accompanying the manuscript: Cui, Wenping, Robert Marsland III, and Pankaj Mehta. "Diverse communities behave like typical random ecosystems." arXiv:1904.02610 (2019).

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6. Differentiable-Gillespie-Algorithm Differentiable-Gillespie-Algorithm Public

   These are notebooks for the Differentiable Gillespie Algorithm

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