- Alves FP, Durlacher RR, Menezes MJ, Krieger H, Silva LHP, et al. (2002) High prevalence of asymptomatic Plasmodium vivax and Plasmodium falciparum infections in native Amazonian populations. Am J Trop Med Hyg 66: 641â648.
Paper not yet in RePEc: Add citation now
- Artzy-Randrup Y, Alonso D, Pascual M (2010) Transmission intensity and drug resistance in malaria population dynamics: implications for climate change. PLOS One 5: e13588.
Paper not yet in RePEc: Add citation now
Bhadra A, Ionides EL, Laneri K, Pascual M, Bouma M, et al. (2011) Malaria in Northwest India: data analysis via partially observed stochastic differential equation models driven by Levy noise. Journal of the American Statistical Association 106: 440â451.
- Birrell PJ, Ketsetzis G, Gay NJ, Cooper BS, Presanis AM, et al. (2011) Bayesian modeling to unmask and predict influenza A/H1N1pdm dynamics in London. Proceedings of the National Academy of Science 108: 18238â18243.
Paper not yet in RePEc: Add citation now
- Bouma MJ, Dye C (1997) Cycles of malaria associated with El Nino in Venezuela. The Journal of the American Medical Association 278: 1772â1774.
Paper not yet in RePEc: Add citation now
- Bouma MJ, Poveda G, Rojas W, Chavasse D, Quinones M, et al. (1997) Predicting high-risk years for malaria in Colombia using parameters of El Nino Southern Oscillation. Tropical Medicine and International Health 2: 1122â
Paper not yet in RePEc: Add citation now
- Breto C, He D, Ionides EL, King AA (2009) Time series analysis via mechanistic models. The Annals of Applied Statistics 3: 319â348.
Paper not yet in RePEc: Add citation now
- Chaves LF, Cohen JM, Pascual M, Wilson ML (2008) Social exclusion modifies climate and deforestation impacts on a vector-borne disease. PLOS Neglected tropical diseases 2: e176.
Paper not yet in RePEc: Add citation now
Chaves LF, Pascual M (2006) Climate cycles and forecasts of Cutaneous Leishmaniasis, a nonstationary vector-borne disease. PLOS Medicine 3: e295.
- Chowell G, Munayco CV, Escalante AA, McKenzie FE (2009) The spatial and temporal patterns of falciparum and vivax malaria in Peru: 1994â2006. Malaria Journal 8: 142.
Paper not yet in RePEc: Add citation now
- Cooch EG, Conn PB, Ellner SP, Dobson AP, Pollock KH (2012) Disease dynamics in wild populations: modeling and estimation: a review. Journal of Ornithology 142: S485âS509.
Paper not yet in RePEc: Add citation now
- Cooper B, Lipsitch M (2004) The analysis of hospital infection data using hidden Markov models. Biostatistics 5: 223â237.
Paper not yet in RePEc: Add citation now
- Coulson T, Rohani P, Pascual M (2004) Skeletons, noise and population growth: the end of an old debate? Trends in Ecology and Evolution 19: 359â364.
Paper not yet in RePEc: Add citation now
- Cummings DAT, Iamsirithaworn S, Lessler JT, McDermott A, Prasanthong R, et al. (2009) The impact of the demographic transition on dengure in Thailand: insights from a statistical analysis and mathematical modeling. PLOS Medicine 6: e1000139.
Paper not yet in RePEc: Add citation now
- da Silva-Nunes M, Codeco CT, Malafronte RS, Silva NS, Juncansen C, et al. (2008) Malaria on the Amazonian frontier: transmission dynamics, risk factors, spatial distribution, and prospects for control. American Journal of Tropical Medicine and Hygiene 79: 624â635.
Paper not yet in RePEc: Add citation now
- da Silva-Nunes M, Ferreira MU (2007) Clinical spectrum of uncomplicated malaria in semi-immune Amazonians: beyond the ââsymptomaticââ vs ââasymptomatic ââ dichotomy. Memorias do Instituto Oswaldo Cruz 102: 341â347.
Paper not yet in RePEc: Add citation now
- da Silva-Nunes M, Malafronte RS, Luz BA, Souza EA, Martins LC, et al. (2006) The Acre project: the epidemiology of malaria and arthropod-borne virus infections in a rural Amazonian population. Cadernos de Saude Publica 22: 1325â1334.
Paper not yet in RePEc: Add citation now
- Ferreira MU, Silva-Nunes M (2010) Evidence-based public health and prospects for malaria control in Brazil. The Journal of Infection in Developing Countries 4: 533â545.
Paper not yet in RePEc: Add citation now
Finkenstadt BF, Grenfell BT (2000) Time series modelling of childhood diseases: a dynamical systems approach. Appl Statist 49: 187â205.
- Forchhammer MC, Stenseth NC, Post E, Langvatn R (1998) Population dynamics of Norwegian red deer: density-dependence and climatic variation. Proceedings of the Royal Society B: Biological Sciences 265: 341â350.
Paper not yet in RePEc: Add citation now
- Grad YH, Miller JC, Lipsitch M (2012) Chole modeling: challenges to quantitative analysis and predicting the impact of interventions. Epidemiology 23: 523â530.
Paper not yet in RePEc: Add citation now
- Grassly NC, Fraser C (2008) Mathematical models of infectious disease transmission. Nature Reviews Microbiology 6: 477â487.
Paper not yet in RePEc: Add citation now
Grenfell BT, Bjornstad ON, Kappey J (2001) Travelling waves and spatial hierarchies in measles epidemics. Nature 414: 716â723.
- Hardnett FP, Hoekstra RM, Kennedy M, Charles L, Angulo FJ (2004) Epidemiologic issues in study design and data analysis related to FoodNet activities. Clinical Infectious Diseases 38: S121â126.
Paper not yet in RePEc: Add citation now
- Hashizume M, Chaves LF, Minakawa N (2012) Indian ocean dipole drives malaria resurgence in East African highlands. Scientific Reports 2. doi: 10.1038/ srep00269.
Paper not yet in RePEc: Add citation now
- Hashizume M, Terao T, Minakawa N (2008) The Indian Ocean Dipole and malaria risk in the highlands of western Kenya. Proceedings of the National Academy of Science 106: 1857â1862.
Paper not yet in RePEc: Add citation now
Hay SI, Cox J, Rogers DJ, Randolph SE, Stern DI, et al. (2002) Climate change and the resurgence of malaria in the East African highlands. Nature 415: 905â
- Hay SI, Rogers DJ, Randolph SE, Stern DI, Cox J, et al. (2002) Hot topic or hot air? Climate change and malaria resurgence in East African highlands. Trends in Parasitology 18: 530â534. Modeling of Government Surveillance Disease Data PLOS Computational Biology | www.ploscompbiol.org 13 November 2013 | Volume 9 | Issue 11 | e1003312
Paper not yet in RePEc: Add citation now
- He D, Ionides EL, King AA (2010) Plug-and-play inference for disease dynamics: measles in large and small populations as a case study. Journal of the Royal Society Interface 7: 271â283.
Paper not yet in RePEc: Add citation now
- Huang SS, Finkelstein JA, Lipsitch M (2005) Modeling community- and individual-level effects of child-care center attendance on pneumococcal carriage. Clinical Infectious Diseases 40: 1215â1222.
Paper not yet in RePEc: Add citation now
- Ionides EL, Breto C, King AA (2006) Inference for nonlinear dynamical systems. Proceedings of the National Academy of Science 103: 18438â18443.
Paper not yet in RePEc: Add citation now
Keeling MJ, Rohani P (2008) Modeling infectious diseases in humans and animals. Princeton, New Jersey: Princeton University Press.
King AA, Ionides EL, Pascual M, Bouma MJ (2008) Inapparent infections and cholera dynamics. Nature 454: 877â880.
Koelle K, Rodo X, Pascual M, Mostafa G (2005) Refractory periods and climate forcing in cholera dynamics. Nature 436: 696â700.
- LaDeau SL, Glass GE, Hobbs NT, Latimer A, Ostfeld RS (2011) Data-model fusion to better understand emerging pathogens and improve infectious disease forecasting. Ecological Applications 21: 1443â1460. Modeling of Government Surveillance Disease Data PLOS Computational Biology | www.ploscompbiol.org 14 November 2013 | Volume 9 | Issue 11 | e1003312
Paper not yet in RePEc: Add citation now
- Ladeia-Andrade S, Ferreira MU, Carvalho ME, Curado I, Coura JR (2009) Age-dependent acquisition of protective immunity to malaria in riverine populations of the Amazon Basin of Brazil. Am J Trop Med Hyg 80: 452â459.
Paper not yet in RePEc: Add citation now
Laneri K, Bhadra A, Ionides EL, Bouma MJ, Dhiman RC, et al. (2010) Forcing versus feedback: epidemic malaria and monsoon rains in Northwest India. PLOS Computational Biology 6: e1000898.
- Levi T, Kilpatrick AM, Mangel M, Wilmers C (2012) Deer, predators, and the emergence of Lyme disease. Proceedings of the National Academy of Science 109: 10942â10947.
Paper not yet in RePEc: Add citation now
- Loevinsohn ME (1994) Climatic warming and increased malaria incidence in Rwanda. The Lancet 343: 714â718.
Paper not yet in RePEc: Add citation now
Macauley C (2005) Aggressive active case detection: a malaria control strategy based on the Brazilian model. Soc Sci Med 60: 563â573.
McKinley T, Cook AR, Deardon R (2009) Inference in epidemic models without likelihoods. The International Journal of Biostatistics 5: 1, Article 24.
- Nagao Y, Koelle K (2008) Decreases in dengue transmission may act to increase the incidence of dengue hemorrhagic fever. Proceedings of the National Academy of Science 105: 2238â2243.
Paper not yet in RePEc: Add citation now
- Nagao Y, Svasti P, Tawatsin A, Thavara U (2008) Geographical structure of dengue transmission and its determinants in Thailand. Epidemiol Infect 136: 843â851.
Paper not yet in RePEc: Add citation now
- Okell LC, Ghani AC, Lyons E, Drakeley CJ (2009) Submicroscopic infection in Plasmodium falciparum-endemic populations: a systematic review and metaanalysis. The Journal of Infectious Diseases 200: 1509â1517.
Paper not yet in RePEc: Add citation now
- Oliveira-Ferreira J, Lacerda M, Brasil P, Ladislau J, Tauil P, et al. (2010) Malaria in Brazil: an overview. Malaria Journal 9: 115.
Paper not yet in RePEc: Add citation now
- Olson SH, Gangnon R, Elguero E, Durieux L, Guegan J-F, et al. (2009) Links between climate, malaria, and wetlands in the Amazon basin. Emerging Infectious Diseases 15: 659â662.
Paper not yet in RePEc: Add citation now
- Olson SH, Gangnon R, Silveira GA, Patz JA (2010) Deforestation and malaria in Mancio Lima county, Brazil. Emerging Infectious Diseases 16: 1108â1115.
Paper not yet in RePEc: Add citation now
- Pascual M, Ahumada JA, Chaves LF, Rodo X, Bouma M (2006) Malaria resurgence in the East African highlands: temperature trends revisited. Proceedings of the National Academy of Science 103: 5829â5834.
Paper not yet in RePEc: Add citation now
- Pascual M, Cazelles B, Bouma MJ, Chaves LF, Koelle K (2008) Shifting patterns: malaria dynamics and rainfall variability in an African highland. Proceedings of the Royal Society B: Biological Sciences 275: 123â132.
Paper not yet in RePEc: Add citation now
- Patz JA, Campbell-Lendrum D, Holloway T, Foley JA (2005) Impact of regional climate change on human health. Nature 438: 310â317.
Paper not yet in RePEc: Add citation now
- R Development Core Team (2010) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
Paper not yet in RePEc: Add citation now
- Rohani P (2009) The link between dengue incidence and El Nino Southern Oscillation. PLOS Medicine 6: e1000185.
Paper not yet in RePEc: Add citation now
- Rohani P, King AA (2010) Never mind the length, feel the quality: the impact of long-term epidemiological data sets on theory, application and policy. Trends in Ecology and Evolution 25: 611â618.
Paper not yet in RePEc: Add citation now
- Rohani P, Zhong X, King AA (2010) Contact network structure explains the changing epidemiology of Pertussis. Science 330: 982â985.
Paper not yet in RePEc: Add citation now
Shaman J, Pitzer VE, Viboud C, Grenfell BT, Lipsitch M (2010) Absolute humidity and the seasonal onset of Influenza in the continental United States. PLOS Biology 8: e1000316.
Shrestha S, King AA, Rohani P (2011) Statistical inference for multi-pathogen systems. PLOS Computational Biology 7: e1002135.
- Smith MK, Powers KA, Muessig KE, Miller WC, Cohen MS (2012) HIV treatment as prevention: the utility and limitations of ecological observation. PLOS Medicine 9: e1001260.
Paper not yet in RePEc: Add citation now
Snow RW, Guerra CA, Noor AM, Myint HY, Hay SI (2005) The global distribution of clinical episodes of Plasmodium falciparum malaria. Nature 434: 214â217.
- Sultan B, Labadi K, Guegan J-F, Janicot S (2005) Climate drives the meningitis epidemics onset in West Africa. PLOS Medicine 2: e6.
Paper not yet in RePEc: Add citation now
- Valle D, Clark J (2013) Conservation efforts may increase malaria burden in the Brazilian Amazon. PLOS One 8: e57519.
Paper not yet in RePEc: Add citation now
Valle D, Clark J, Zhao K (2011) Enhanced understanding of infectious diseases by fusing multiple datasets: a case study on malaria in the Western Brazilian Amazon region. PLOS One 6: e27462.
- Van Kerkhove MD, Asikainen T, Becker NG, Bjorge S, Desenclos J-C, et al. (2010) Studies needed to address public health challenges of the 2009 H1N1 Influenza pandemic: insights from modeling. PLOS Medicine 7: e1000275.
Paper not yet in RePEc: Add citation now
Wearing HJ, Rohani P, Keeling MJ (2005) Appropriate models for the management of infectious diseases. Plos Medicine 2: e174.
- Zhou G, Minakawa N, Githeko AK, Yan G (2004) Association between climate variability and malaria epidemics in the East African highlands. Proceedings of the National Academy of Science 101: 2375â2380.
Paper not yet in RePEc: Add citation now