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Quantifying plant ground coverage using     A. Thomas Crawley
                                            MALS Graduate Student
digital photography and open-source image   Virginia Polytechnic Institute
                                            and State University
editing software                            ath0mas@vt.edu
Goal
To evaluate and compare growth rates of test groundcover species
in various combinations on a shaded, north-facing slope at the Maymont
estate. This assessment will be made using a publicly-available, open source
graphics editing program.
Maymont
                     ●   Opened to the public 1925
                     ●   100 acre arboretum.
                     ●   Granting institutions include:
                         Institute for Museum Services
                         America the Beautiful
                         Virginia Department of Forestry




UTM E:    0280907
UTM N:    4157236
UTM Zone:       18
County:   Richmond
State:    Virginia
Erosion
          ●       North-facing slope
          ●       Steep grade 30 – 60°




              ●    Exposed tree roots
              ●    Tree stability at risk
Soil Structure
                                                            Wateree
                                                             ●   sandy loam
                                                             ●   weak fine granular
                                                                 structure
                                                             ●   very friable
                                                             ●   strongly acid




(mg/kg) pH-4.88 P-4 K-92 Ca-371 Mg-60 Zn-2.1 Mn-7.2 Cu-0.5 Fe-16.9 B-0.2
(meq/100g) EST. CEC-6.1
(percentage) Acidity-42.4 Base Sat-42.4 Ca Sat-30.5 Mg Sat-8.1 K Sat-3.9 OM-4.2
Invasive species
                   English ivy (Hedera helix) &
                   Liriope spicata

                   ●   Outcompeting native taxa

                   ●   Signs of recovery despite
                       massive removal effort

                   ●   Invasives present on the edges
                       of the wooded area have
                       difficulty spreading onto the
                       shaded hillside...

                   ●   ...but they stabilize soil.
Woody Overstory
                  ●   Red maple
                      (Acer rubrum)
                  ●   Tulip poplar
                      (Liriodendron tulipifera)
                  ●   White oak
                      (Quercus alba)
Woody Understory
                   ●   Rhododendron spp
                   ●   Dogwood
                       (Cornus florida)
                   ●   American Hornbeam
                       (Carpinus caroliniana)
                   ●   Eastern Red Cedar
                       (Juniperus virginiana)
                   ●   American Holly
                       (Ilex opaca)
Native Groundcovers
                                                                   ●   Christmas Fern
                                                                       (Polystichum acrostichoides)

                                                                   ●   Coral Bells
                                                                       (Heuchera villosa)

                                                                   ●   Allegheny Spurge
                                                                       (Pachysandra procumbens)




The heuchera and ferns will be established as 2” plugs and the pachysandra, bareroot.
Objectives
●   Develop a macro program free to users and capable of using hue
    selection with digital photographs to measure and compare the areas
    covered by groundcover plant species.

●   Use that macro program to estimate the percentage of ground
    covered by test plantings at various stages during the first year of
    growth.

●   Use the growth rate information, along with qualitative evaluations of the
    test plantings, to choose the most effective method to revegetate the
    shaded, north-facing slope with native plant species.
Method
               1. Establish two sets of six
                  1m x 1m quadrats within
                  the planting area.
               2. Establish the test species
                  and species combinations
                  within each set of quadrats
                  as shown.
               3. Using a digital camera
                  and stand constructed
                  for photographing
                  groundcover on a slope,
                  photograph each of the
                  12 test plots monthly.

 FERN
 HEUCHERA
 PACHYSANDRA
Method
               1. Establish two sets of six
                  1m x 1m quadrats within
                  the planting area.
               2. Establish the test species
                  and species combinations
                  within each set of quadrats
                  as shown.
               3. Using a digital camera
                  and stand constructed
                  for photographing
                  groundcover on a slope,
                  photograph each of the
                  12 test plots monthly.

 FERN
 HEUCHERA
 PACHYSANDRA
Method
         4. Use the GNU Image Manipulation
            Program to assess the ratio of green
            (plant) pixels to brown (soil and leaf
            litter) pixels within the photographed
            quadrat.

         5. Compare the results with those from
            Samplepoint, a program developed
            by the USDA which also measures
            the percentage of ground cover using
            digital image analysis.
Method
         4. Use the GNU Image Manipulation
            Program to assess the ratio of green
            (plant) pixels to brown (soil and leaf
            litter) pixels within the photographed
            quadrat.

         5. Compare the results with those from
            Samplepoint, a program developed
            by the USDA which also measures
            the percentage of ground cover using
            digital image analysis.
Samplepoint
                                                                             ●   A manual image-analysis
                                                                                 program designed by
                                                                                 USDA.

                                                                             ●   Facilitates vegetation cover
                                                                                 measurements from nadir
                                                                                 digital images of any scale.

                                                                             ●   Stores classification data to
                                                                                 a database as the user
                                                                                 classes each point.



Originators: Booth D.T., S.E. Cox & R.D.
Title: SamplePoint: A manual image-analysis program
Release_Date: 2006
Provider: USDA Agricultural Research Service
URL: http://www.ars.usda.gov/services/software/download.htm?softwareid=128
Grad Project Slideshare2
References
Booth, D. T.; Cox, S. E.; Fifield, C.; Phillips, P.;
Williamson, N. 2004. Image Analysis Compared with
Other Methods for Measuring Groundcover. Arid Land
Research and Management. 19: 91–100.

Booth, D. T.; Cox, S. E.; Berryman, R. D. 2006.
Point sampling digital imagery with 'samplepoint'.
Monitoring and Assessment. 123: 97–108.

Johnson, D. E.; Louhaichi M.; Vulfson, M. 2003.
VegMeasure: A C++ Computer Program for Field
Measurement of Vegetative Cover, ASPRS 2003
Annual Conference Proceedings. May 2003;
Anchorage, Alaska. 8 pp.

Richardson, M. D.; Karcher, D. E.; Purcell, L. C.
2001. Quantifying Turfgrass Cover Using Digital
Image Analysis. Crop Science 41: 1884–1888

Rotz, J. D.; Abaye, A. O.; Wynne, R. H.; Rayburn, E.
B.; Scaglia, G.; Phillips, R. D. 2008. Classification of
digital photography for measuring productive
groundcover. Rangeland Ecology & Management. 61:
245–248.

Wells, K.F. 1971. Measuring Vegetation Changes on
Fixed Quadrats by Vertical Ground
Stereophotography. Journal of Range Management,
24: 233–236.

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Grad Project Slideshare2

  • 1. Quantifying plant ground coverage using A. Thomas Crawley MALS Graduate Student digital photography and open-source image Virginia Polytechnic Institute and State University editing software ath0mas@vt.edu
  • 2. Goal To evaluate and compare growth rates of test groundcover species in various combinations on a shaded, north-facing slope at the Maymont estate. This assessment will be made using a publicly-available, open source graphics editing program.
  • 3. Maymont ● Opened to the public 1925 ● 100 acre arboretum. ● Granting institutions include: Institute for Museum Services America the Beautiful Virginia Department of Forestry UTM E: 0280907 UTM N: 4157236 UTM Zone: 18 County: Richmond State: Virginia
  • 4. Erosion ● North-facing slope ● Steep grade 30 – 60° ● Exposed tree roots ● Tree stability at risk
  • 5. Soil Structure Wateree ● sandy loam ● weak fine granular structure ● very friable ● strongly acid (mg/kg) pH-4.88 P-4 K-92 Ca-371 Mg-60 Zn-2.1 Mn-7.2 Cu-0.5 Fe-16.9 B-0.2 (meq/100g) EST. CEC-6.1 (percentage) Acidity-42.4 Base Sat-42.4 Ca Sat-30.5 Mg Sat-8.1 K Sat-3.9 OM-4.2
  • 6. Invasive species English ivy (Hedera helix) & Liriope spicata ● Outcompeting native taxa ● Signs of recovery despite massive removal effort ● Invasives present on the edges of the wooded area have difficulty spreading onto the shaded hillside... ● ...but they stabilize soil.
  • 7. Woody Overstory ● Red maple (Acer rubrum) ● Tulip poplar (Liriodendron tulipifera) ● White oak (Quercus alba)
  • 8. Woody Understory ● Rhododendron spp ● Dogwood (Cornus florida) ● American Hornbeam (Carpinus caroliniana) ● Eastern Red Cedar (Juniperus virginiana) ● American Holly (Ilex opaca)
  • 9. Native Groundcovers ● Christmas Fern (Polystichum acrostichoides) ● Coral Bells (Heuchera villosa) ● Allegheny Spurge (Pachysandra procumbens) The heuchera and ferns will be established as 2” plugs and the pachysandra, bareroot.
  • 10. Objectives ● Develop a macro program free to users and capable of using hue selection with digital photographs to measure and compare the areas covered by groundcover plant species. ● Use that macro program to estimate the percentage of ground covered by test plantings at various stages during the first year of growth. ● Use the growth rate information, along with qualitative evaluations of the test plantings, to choose the most effective method to revegetate the shaded, north-facing slope with native plant species.
  • 11. Method 1. Establish two sets of six 1m x 1m quadrats within the planting area. 2. Establish the test species and species combinations within each set of quadrats as shown. 3. Using a digital camera and stand constructed for photographing groundcover on a slope, photograph each of the 12 test plots monthly. FERN HEUCHERA PACHYSANDRA
  • 12. Method 1. Establish two sets of six 1m x 1m quadrats within the planting area. 2. Establish the test species and species combinations within each set of quadrats as shown. 3. Using a digital camera and stand constructed for photographing groundcover on a slope, photograph each of the 12 test plots monthly. FERN HEUCHERA PACHYSANDRA
  • 13. Method 4. Use the GNU Image Manipulation Program to assess the ratio of green (plant) pixels to brown (soil and leaf litter) pixels within the photographed quadrat. 5. Compare the results with those from Samplepoint, a program developed by the USDA which also measures the percentage of ground cover using digital image analysis.
  • 14. Method 4. Use the GNU Image Manipulation Program to assess the ratio of green (plant) pixels to brown (soil and leaf litter) pixels within the photographed quadrat. 5. Compare the results with those from Samplepoint, a program developed by the USDA which also measures the percentage of ground cover using digital image analysis.
  • 15. Samplepoint ● A manual image-analysis program designed by USDA. ● Facilitates vegetation cover measurements from nadir digital images of any scale. ● Stores classification data to a database as the user classes each point. Originators: Booth D.T., S.E. Cox & R.D. Title: SamplePoint: A manual image-analysis program Release_Date: 2006 Provider: USDA Agricultural Research Service URL: http://www.ars.usda.gov/services/software/download.htm?softwareid=128
  • 17. References Booth, D. T.; Cox, S. E.; Fifield, C.; Phillips, P.; Williamson, N. 2004. Image Analysis Compared with Other Methods for Measuring Groundcover. Arid Land Research and Management. 19: 91–100. Booth, D. T.; Cox, S. E.; Berryman, R. D. 2006. Point sampling digital imagery with 'samplepoint'. Monitoring and Assessment. 123: 97–108. Johnson, D. E.; Louhaichi M.; Vulfson, M. 2003. VegMeasure: A C++ Computer Program for Field Measurement of Vegetative Cover, ASPRS 2003 Annual Conference Proceedings. May 2003; Anchorage, Alaska. 8 pp. Richardson, M. D.; Karcher, D. E.; Purcell, L. C. 2001. Quantifying Turfgrass Cover Using Digital Image Analysis. Crop Science 41: 1884–1888 Rotz, J. D.; Abaye, A. O.; Wynne, R. H.; Rayburn, E. B.; Scaglia, G.; Phillips, R. D. 2008. Classification of digital photography for measuring productive groundcover. Rangeland Ecology & Management. 61: 245–248. Wells, K.F. 1971. Measuring Vegetation Changes on Fixed Quadrats by Vertical Ground Stereophotography. Journal of Range Management, 24: 233–236.