Science Online 2010 Open Notebook Science Session
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The document discusses the principles and practices of open notebook science, emphasizing the importance of data provenance and transparency in scientific research. It highlights various methods for sharing raw data and assumptions, such as using Google Spreadsheets and interactive tools for chemical data. The document also contrasts open notebook science with traditional publishing methods, showcasing collaborative approaches to data collection and research validation.
Science Online 2010 Open Notebook Science Session
- 1. Open Notebook Science Jean-Claude Bradley January 17, 2010 Science Online 2010 Associate Professor of Chemistry Drexel University
- 2. The NaH oxidation controversy
- 3. Information spreads quickly through the blogosphere
- 6. Khalid Mirza and Marshall Moritz
- 8. Top results on a Google search
- 9. Motivation: Faster Science, Better Science
- 10. Open Notebook Science Logos (Andy Lang, Shirley Wu) Sharing: how much and when
- 11. There are NO FACTS, only measurements embedded within assumptions Open Notebook Science maintains the integrity of data provenance by making assumptions explicit
- 12. TRUST PROOF
- 13. The Log makes Assumptions Explicit
- 14. The Rationale of Findings Explicit
- 15. Raw Data Made Public Splatter? Some liquid
- 16. YouTube for demonstrating experimental set-up
- 17. Calculations Made Public on Google Spreadsheets
- 18. Revision History on Google Spreadsheets
- 20. Comparing Wiki Page Versions
- 21. Proof of Purity with interactive NMR spectrum using JSpecView and JCAMP-DX
- 22. Linking to Molecules in Chemistry Databases
- 23. (Andy Lang, Tony Williams) Open Data JCAMP spectra for education (Andy Lang, Tony Williams, Robert Lancashire)
- 24. Link Spectral Game to Open Educational Content
- 25. The Ugi reaction: can we predict precipitation? Can we predict solubility in organic solvents?
- 27. ONS Submeta Award Winners
- 29. Solubilities collected in a Google Spreadsheet
- 30. Rajarshi Guha’s Live Web Query using Google Viz API
- 31. Data provenance: From Wikipedia to…
- 32. … the lab notebook and raw data
- 33. Students and Judges co-Authors on ONS Solubility Book
- 34. Concentration (0.4, 0.2, 0.07 M) Solvent (methanol, ethanol, acetonitrile, THF) Excess of some reagents (1.2 eq.) How does Open Notebook Science fit with traditional publication?
- 35. Paper written on Wiki
- 36. References to papers, blog posts, lab notebook pages, raw data
- 37. Paper on Journal of Visualized Experiments (JoVE)
- 38. Pre-print on Nature Precedings
- 39. ChemSpider Automated Mark-up of Chemical Names
- 40. How bad is it? Try to find the solubility EGCG?
- 41. =2.3 g/L WTF?!
- 42. The End of the Chain of Provenance
- 43. The Scandal of Bell’s Lab Notebook