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Perspec'ves	on	Applica'ons	of	a	
Stochas'c	Spiking	Neuron	Model	to	
Neural	Network	Modeling	
Antonio	C.	Roque	
USP,	Ribeirão	Preto,	SP,	Brazil	
Joint	work	with	Ludmila	Brochini1,	Ariadne	Costa3,	
Vinícius	Cordeiro2,	Renan	Shimoura2,	Miguel	
Abadi1,	Osame	Kinouchi2	and	Jorge	Stolfi3	
1USP,	São	Paulo;	2USP,	Ribeirão	Preto;	3Unicamp,	Campinas		
PNLD	2016,	Berlin
Why	stochas'c	neuron	models?	
•  In	vivo	and	in	vitro	recordings	of	single	neuron	
spike	trains	are	characterized	by	a	high	degree	
of	variability	
•  The	following	examples	are	taken	from	the	
book	by	Gerstner,	Kistler,	Naud	and	Paninski,	
Neuronal	Dynamics,	CUP,	2014
Awake	mouse,	cortex,	freely	whisking	
Crochet	et	al.,	2011	
Spontaneous	ac'vity	in	vivo
Trial	to	trial	variability	in	vivo	
15	repe''ons	of	the	same	random	dot	mo'on	paern	
Adapted	from	Bair	and	Koch,	1996;		
Data	from	Newsome,	1989
Trial	to	trial	variability	in	vitro	
4	repe''ons	of	the	same	'me-dependent	s'mulus	
Modified	from	Naud	and	Gerstner,	2012
Sources	of	noise:		
extrinsic	and	intrinsic	to	neurons			
Lindner,	2016
Two	types	of	noise	model	for	a	neuron	
•  Spike	genera'on	is	directly	modeled	as	a	
stochas'c	process	
•  Spike	genera'on	is	modeled	
determinis'cally	and	noise	enters	the	
dynamics	via	addi'onal	stochas'c	terms
Stochas'c	model	for	systems	of	
interac'ng	neurons
The	stochas'c	model	
•  Vi(t): time dependent membrane potential of neuron i at time t for i = 1, …, N;
•  t: discrete time given by integer multiples of constant step Δ small enough to
exclude possibility of a neuron firing more than once during each step;
•  Xi(t): number of times neuron i fired between t and t+1, namely 0 or 1;
•  If neuron fires between t and t+1, its potential drops to VR by time t+1;
•  wij: weight of synapse from neuron j to neuron i;
•  µ: decay factor (in the interval [0, 1]) due to leakage during time step Δ;
•  Xi(t) = 1 with probability Φ(Vi(t));
•  Φ(V) is assumed to be monotonically increasing and saturating at some
saturation potential VS.
Comment	
•  If	Φ(V) = Θ(V−Vth),	i.e.	0 for V<Vth and	1	for	
V>Vth,	the	model	becomes	the	determinis'c	
discrete-'me	leaky	integrate-and-fire	model	(LIF).	
•  Any	other	choice	of	Φ(V) gives	a	stochas'c	
neuron	
Vs
In	the	following,	I	will	show	some	
analy'cal	and	numerical	results	of	
network	models	using	this	
stochas'c	neuron	model
Network	with	all-to-all	coupling	
Mean	field	analysis	
Analy'cal	and	numerical	results
Macroscopic	quan''es	
•  Poten'al	distribu'on:	
	 																			frac'on	of	neurons	with	poten'al	in				
	 	 	 										the	range	(V,	V	+	dV)	at	'me	t	
•  Network	ac'vity:		
	 									frac'on	of	neurons	that	fired	between	t	and	
	 									t	+	1
Shape	of	the	poten'al	distribu'on	
P(V,t)	has	a	component	that	is	a	Dirac	pulse	at	V	=	VR	
with	amplitude									,	accoun'ng	for	the	neurons	that	
fired	between	t	and	t	+	1
Mean-field	analysis	
•  Fully	connected	network:	each	neuron	
receives	inputs	from	all	other	N	−	1	neurons;	
•  VR	=	0;	
•  Uniform	constant	external	input:	Ii(t)	=	I;	
•  All	weights	are	equal:
The	mean-field	poten'al	distribu'on	
•  Once	all	neurons	have	fired	at	least	once,	the	density	
P(V,t)	becomes	a	combina'on	of	discrete	impulses	
with	amplitudes	η0(t),	η1(t),	η2(t),	…,	at	poten'als	
U0(t),	U1(t),	U2(t),	...,	such	that																			.	
•  The	values	of	ηk(t)	and	Uk(t)	evolve	by	the	equa'ons:
•  The	amplitude														is	the	frac'on	of	neurons	with	
“age”	k:	neurons	that	fired	between	t – k – 1	and	t – k
and	did	not	fire	between	t – k and	t		
•  For	this	type	of	distribu'on	de	network	ac'vity	ρ(t)	is:
•  Given	values	for	µ,	W	and	the	func'on	
Φ(V):	
– The	recurrence	equa'ons	can	be	solved	
numerically	
– In	some	cases	they	can	be	solved	
analy'cally
Examples	of	Φ(V)		
Satura'ng	monomial	func'on	of	degree	r	
Ra'onal	func'on	
Γ = 1; VT = 0NB.:	The	determinis'c	LIF	model	corresponds	
to	the	monomial	func'on	with	 			
S
Results	for	the	monomial	satura'ng	
func'on	with	μ	=	0
•  In	the	case	with	µ = 0,	neurons	“forget”	all	previous	
input	signals,	except	those	received	at t – 1.
•  P(V,	t)	contains	only	two	peaks	at	poten'als:	
V0(t)	=	0	and	V1(t)	=	I	+	Wρ(t	−	1)	
•  Taking	into	account	the	normaliza'on	condi'on,	
																																																													
				the	frac'ons	η0(t)	and	η1(t)	evolve	as:
•  Assuming	that	neurons	cannot	fire	at	rest,	Φ(0) = 0:
•  In a stationary regime, the recurrence equations
reduce to:
•  Since Φ(V) ≤ 1, any stationary regime must have ρ ≤
1/2
Φ(V) = (ΓV)r, I = 0; r = 1	
Con'nuous	phase	transi'ons	
Absorbing
State
ρ = 0
Fixed
point
ρ > 0
2-cycle
ρ1 = ½ − a
ρ2 = ½ + a
a ≤ ½ − Vs/W
WC	=	1/Γ	
Γ	=	1	
WB	=	2/Γ	
Brochini	et	al.,	2016
Φ(V) = (ΓV)r, I = 0; r > 1	
Discon'nuous	phase	transi'ons	
r	=	1.2	 r	=	2	
ρ+	
ρ−	
Non	trivial	solu'on	ρ+	only	for	1	≤	r	≤	2	
For	r	=	2	this	solu'on	is	a	point	at	WC	=	2/Γ	
The	discon'nuity	goes	to	zero	for	r	=	1			
		
W	=	WC(r)	
Γ = 1	 Γ = 1	
Brochini	et	al.,	2016
Φ(V) = (ΓV)r, I = 0; r < 1	
Ceaseless	ac'vity	
No	absorbing	ρ	=	0	solu'on	
Brochini	et	al.,	2016	
Γ = 1	
ρ	>	0	for	any	W	>	0
Numerical solutions for µ > 0
Φ(V) = (ΓV)r, I = 0; r = 1	
Brochini	et	al.,	2016
Discon'nuous	phase	transi'ons	for	VT > 0
Φ(V) = (Γ(V-VT))r, I = 0, µ = 0 ; r = 1, Γ = 1	
VT	=	0	 VT	=	0.05	 VT	=	0.1	
The	discon'nuity	ρC	goes	to	zero	for	VT	à	0	
Brochini	et	al.,	2016
Neuronal	avalanches		
(simula'on	studies	at	the	cri'cal	point	of	
the	con'nuous	phase	transi'on)	
•  An	avalanche	that	starts	at	'me	t	=	a	and	ends	
at	'me	t	=	b	has:		
– Dura'on	d	=	b	−	a;	
	
– Size
Neuronal	avalanches	at	the	cri'cal	point	
Φ(V) = (ΓV)r, I = 0, µ = 0; r = 1, ΓC = WC = 1	
Brochini	et	al.,	2016	
Avalanche	size	
sta's'cs
Avalanche	dura'on	sta's'cs	
Brochini	et	al.,	2016
Self-organiza'on	with	dynamic	neuronal	gains	
Idea:	fix	the	weights	at	W	=	1	and	allow	the	gains	Γ	to	vary	
u	=	1,	A	=	1.1,	τ	=	1000	ms		 Brochini	et	al.,	2016
Network	with	realis'c	connec'vity	
Excitatory	and	inhibitory	neurons	
Simula'on	results
The	Potjans-Diesmann	Model	
105	neurons		
(80%	excit.	20%	inhibit.)	
109	synapses	
Available	at	www.opensourcebrain.org	
	
•  Model	for	local	cor'cal	
microcircuit	
•  Integrates	experimental	data	
of	more	than	50	experimental	
papers	
•  Excitatory	and	inhibitory	
neurons	modeled	by	the	same	
determinis'c	LIF	model	
•  Asynchronous-irregular	spiking	
of	neurons	
•  Higher	spike	rate	of	inhibitory	
neurons	
•  Replicates	well	the	distribu'on	
of	spike	rates	across	layers		
						
Potjans	&	Diesmann,	2014
Fit	of	average	behavior	of	stochas'c	model	
(monomial	Φ(V))	to	Izhikevich	model	neurons	
Regular	spiking		
neuron	(excitatory)	 Fast	spiking		
neuron	(inhibitory)
−40	 −35	 −30	 −25	
μ	=	0.9	
Γ	
Γ
win<<	wex	 win<	wex	
win>	wex	 win>>		wex
Computa'onal	cost	
TIzhikevich	
Tstochas'c	
_______	
No.	of	synapses	
----------------------------------------------------	
Time	to	simulate	5	sec	of	
network	ac'vity	
(reduced	network	with	
4000	neurons)	
Which	model	to	use	for	cor'cal	spiking	neurons?	
Izhikevich,	2004
Conclusions	
•  The	stochas'c	neuron	model	introduced	by	
Galves	and	Löcherbach	is	an	interes'ng	
element	for	studies	of	networks	of	spiking	
neurons	
•  Enables	exact	analy'c	results:	
– Phase	transi'ons	
– Avalanches,	SOC	
•  Simple	and	efficient	numerical	implementa'on
Research	Team	
USP,	Sao	Paulo	 USP,	Ribeirão	Preto	
Thanks!	
Unicamp,	Campinas	
NeuroMat	
L.	Brochini	 M.	Abadi	
A.	Galves	
A.	Costa	O.	Kinouchi	 J.	Stolfi	R.	Shimoura	 V.	Cordeiro	
E.	Löcherbach	
Univ.	Cergy-Pontoise	USP,	Sao	Paulo

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Perspectives on Applications of a Stochastic Spiking Neuron Model to Neural Network Modeling