2010-04-07@nsysu.edu.tw




how i made plates
1
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
Times New Roman
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
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20100407 how i made plates
FreeMind
MindManager
Eclipse
OmniGraffle
OmniGraffle
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
~
3
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20100407 how i made plates
20100407 how i made plates
Regional Node       Replication using
                    GBIF-prescriibed protocol

                    Replicating with
Metadata Provider
                    metadata holdings
20100407 how i made plates
20100407 how i made plates
Content Types                                  (system components)   Workflows                       Products

 Taxonomic Information (Name data)              Taxonomic                   Validation Service /     Darwin Core Checklist Archive
                                                Backbone                   File Archiving Service     (DwC-A)
   IUCN red list
   ISSG invasive species          attributes
   CBD indicators                                                            Species Profiling        Species Profiles (TDWG)
                                                                                 Service             Plazi TaxonX
 Species description
 Multimedia / digital objects - derived         Data Store                                           Modeling Results
 LIterature                                                                 Modeling/Statistical
                                                                                 Service             e.g. diagrams, numerical matrics
                                                        query                                        Connections to R
 Species occurrence: polygons
 Species occurrence: points                              producer
 Environmental spatial features                                              Mapping Service         WMS, WFS
 - Habitats                                     GIS-Ready
 - Ecosystems                                   Data Store
 - Climate                                                                 Metadata Packaging        CASSIA, EML, FGDC-BDP as
 - Geographic                                                                   Service              well as other metadata formats
 Other types of spatial data

 Metadata                                       Metadata                        Other service
                                                                                 workflows            Other results
 Annotation layers                              Catalogue
End Users
                                                Other     Desktop Apps
                                               Websites



The Node Portal Toolkit


   Front Presentation Layer


                                                                          Registry
   Modules                                                               (GBRDS)
                                                                         "App Store"
                                                                         Evaluation
                                                                         Credit ?
   APIs                          - vocabularies                          Metrics



  Filter


           GBIF        EOL    flickr      IPT
Scientific Name                      unofficial name "tag"                   Chinese Trade Name




                                                              Corydoras aeneus XXX, 18xx (long-fin)

                               Corydoras aeneus XXX, 18xx (albino)

                                  ,
Corydoras aeneus XXX, 18xx



                         pet                         pet                         pet




                                                                     Reference
                               Literature           Image
                                                                       Link
4
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
Building a
Biodiversity Information Facility -
   the Taiwanese Experience
               Chau Chin Lin
        Burke Chih-Jen Ko, Kun-Chi Lai,
              Kwang-Tsao Shao

                       TaiBIF
Biodiversity Research Center, Academia Sinica, Taipei
Building a national BIF:
the Taiwanese Experience
Chau Chin Lin
Burke Chih-Jen Ko, Kun-Chi Lai,
Kwang-Tsao Shao
Taiwan(Chinese Taipei)
Statistics
• Currently totally 409,108 records with 374,910 geo-referenced(91.6%)
 available through TaiBIF (not many, but a lot more to come...)

  Herbarium of Taiwan Forestry Research Institute - TAIF

          Herbarium of National Taiwan University - TAI

           National Museum of Natural Science - NMNS

              The Herbarium of Academia Sinica - HAST

     Endemic Species Research Institute (plants) - TESRI

   Fish Database of Taiwan (fish data from 9 institutions)

     Taiwan Forestry Research Institute, Insect Museum

                    1979 2003 vegetation survey data

                                 Bird observational data

   Bioresource Collection & Research Center - 4 datasets

                                                             0   22,500   45,000   67,500   90,000
Localizing DiGIR & TAPIR
• DiGIR & TAPIR’s mapping
• Example: Chinese data TAPIR mapping:
  http://140.109.29.92/tapirlink/
  darwinxml/darwin_c.xml
• Instruction blog posts(in Chinese):
  http://taibif.org.tw/informatics/?tag=how-to
20100407 how i made plates
Liparis condylobulbon
                 Synonyms
                Cestichis condylobulbon
                Cestichis persimilis
                Cestichis vestita
                Gyrostachys nesophila
                Leptorkis condylobulbon
                Liparis amboinensis
                Liparis confusa
                Liparis confusa amboinensis
                Liparis dolichopoda
                Liparis nesophila
                Liparis persimilis
                Liparis savaiiensis
                Liparis treubii


                                         -HAST
                 CollectionCode ScientificName
                 Loading...                                                       Collector                             Locality
                 HAST119119       Liparis condylobulbo…                           Pi-Fong Lu                                                                  2006-12-24

                 HAST104555       Liparis condylobulbo…                           Horng-Jye Su                                                                1986-07-06
                                                                                                                   10
                   Search      Refresh
                                                                                                1   /1                    2 Row(s)


                                               -TAIF
                 CollectionCode ScientificName
                 Loading...                                                       Collector                             Locality
                 TAIF229383       Liparis condylobulbo…                           Syunichi Sasaki                                     …           , Taiwan 1926-01-31
                                                                                                                   10
                                                                                                1   /1                    1 Row(s)
TAPIR              Search      Refresh

DwC                                        -TAI
                 CollectionCode ScientificName
                 Loading...                                                       Collector                             Locality

Excel            TAI158373        Liparis confusa J. J. Sm.                       T.P.Linn                              Shanping                              0000-00-00

                 TAI158372        Liparis confusa J. J. Sm.                       T.P.Linn                              Nanjenshan                (       )   0000-00-00
DwC
                 TAI158064        Liparis dolichopoda H…                          C.S.Kuoh                              Shanping-Na…          -               1972-08-23

                 TAI153055        Liparis dolichopoda H…                          Chang Sheng…                          Shanping-Na…          -               1972-08-23

                 TAI153052        Liparis dolichopoda H…                          Chang Sheng…                          Shanping-Na…          -               1972-08-03
        TAPIR
                 TAI148552        Liparis confusa S.S.Sm.                         T.P.Linn                              Shanping-Na…          -               0000-00-00
        DwC      TAI115409        Liparis dolichopoda H…                          S.Sasaki                              Kaohsiung-T…          -               1934-10-14

                 TAI115408        Liparis dolichopoda H…                          Kudo                                                    (           )       1919-09-11

                 TAI033062        Liparis dolichopoda H…                          Y.Yamamoto                            Antungyeh         (           )       1928-01-05

                 TAI033061        Liparis dolichopoda H…                          Y.Yamamoto                            Antungyeh         (           )       1928-01-05
                                                                                                                  10
                   Search      Refresh                                                         1    /3                    23 Row(s)


                                      -TESRI
                 CollectionCode ScientificName
                 Loading...                                                       Collector                             Locality
                 TESRI8733        Liparis condylobulbo…                                                                                                       1996/9/11
                                                                                                                   10
                   Search      Refresh                                                          1   /1                    1 Row(s)



                                                            Map       Satellite    Hybrid       Terrain         1-9

                                                                                            Erase the div       10 - 99
                                                                                                                100 - 299
                                                                                                                300 - 499
                                                                                                                500 -




                                                                                                                : 40 * 40




                             100 mi
                                Map data ©2009 Kingway, NFGIS, ZENRIN, Europa Technologies - Terms of Use
                             200 km




                                                                                     /                      /
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
20100407 how i made plates
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20100407 how i made plates

  • 2. 1
  • 11. 2
  • 22. ~
  • 23. 3 ? ? ?
  • 26. Regional Node Replication using GBIF-prescriibed protocol Replicating with Metadata Provider metadata holdings
  • 29. Content Types (system components) Workflows Products Taxonomic Information (Name data) Taxonomic Validation Service / Darwin Core Checklist Archive Backbone File Archiving Service (DwC-A) IUCN red list ISSG invasive species attributes CBD indicators Species Profiling Species Profiles (TDWG) Service Plazi TaxonX Species description Multimedia / digital objects - derived Data Store Modeling Results LIterature Modeling/Statistical Service e.g. diagrams, numerical matrics query Connections to R Species occurrence: polygons Species occurrence: points producer Environmental spatial features Mapping Service WMS, WFS - Habitats GIS-Ready - Ecosystems Data Store - Climate Metadata Packaging CASSIA, EML, FGDC-BDP as - Geographic Service well as other metadata formats Other types of spatial data Metadata Metadata Other service workflows Other results Annotation layers Catalogue
  • 30. End Users Other Desktop Apps Websites The Node Portal Toolkit Front Presentation Layer Registry Modules (GBRDS) "App Store" Evaluation Credit ? APIs - vocabularies Metrics Filter GBIF EOL flickr IPT
  • 31. Scientific Name unofficial name "tag" Chinese Trade Name Corydoras aeneus XXX, 18xx (long-fin) Corydoras aeneus XXX, 18xx (albino) , Corydoras aeneus XXX, 18xx pet pet pet Reference Literature Image Link
  • 32. 4
  • 36. Building a Biodiversity Information Facility - the Taiwanese Experience Chau Chin Lin Burke Chih-Jen Ko, Kun-Chi Lai, Kwang-Tsao Shao TaiBIF Biodiversity Research Center, Academia Sinica, Taipei
  • 37. Building a national BIF: the Taiwanese Experience Chau Chin Lin Burke Chih-Jen Ko, Kun-Chi Lai, Kwang-Tsao Shao Taiwan(Chinese Taipei)
  • 38. Statistics • Currently totally 409,108 records with 374,910 geo-referenced(91.6%) available through TaiBIF (not many, but a lot more to come...) Herbarium of Taiwan Forestry Research Institute - TAIF Herbarium of National Taiwan University - TAI National Museum of Natural Science - NMNS The Herbarium of Academia Sinica - HAST Endemic Species Research Institute (plants) - TESRI Fish Database of Taiwan (fish data from 9 institutions) Taiwan Forestry Research Institute, Insect Museum 1979 2003 vegetation survey data Bird observational data Bioresource Collection & Research Center - 4 datasets 0 22,500 45,000 67,500 90,000
  • 39. Localizing DiGIR & TAPIR • DiGIR & TAPIR’s mapping • Example: Chinese data TAPIR mapping: http://140.109.29.92/tapirlink/ darwinxml/darwin_c.xml • Instruction blog posts(in Chinese): http://taibif.org.tw/informatics/?tag=how-to
  • 41. Liparis condylobulbon Synonyms Cestichis condylobulbon Cestichis persimilis Cestichis vestita Gyrostachys nesophila Leptorkis condylobulbon Liparis amboinensis Liparis confusa Liparis confusa amboinensis Liparis dolichopoda Liparis nesophila Liparis persimilis Liparis savaiiensis Liparis treubii -HAST CollectionCode ScientificName Loading... Collector Locality HAST119119 Liparis condylobulbo… Pi-Fong Lu 2006-12-24 HAST104555 Liparis condylobulbo… Horng-Jye Su 1986-07-06 10 Search Refresh 1 /1 2 Row(s) -TAIF CollectionCode ScientificName Loading... Collector Locality TAIF229383 Liparis condylobulbo… Syunichi Sasaki … , Taiwan 1926-01-31 10 1 /1 1 Row(s) TAPIR Search Refresh DwC -TAI CollectionCode ScientificName Loading... Collector Locality Excel TAI158373 Liparis confusa J. J. Sm. T.P.Linn Shanping 0000-00-00 TAI158372 Liparis confusa J. J. Sm. T.P.Linn Nanjenshan ( ) 0000-00-00 DwC TAI158064 Liparis dolichopoda H… C.S.Kuoh Shanping-Na… - 1972-08-23 TAI153055 Liparis dolichopoda H… Chang Sheng… Shanping-Na… - 1972-08-23 TAI153052 Liparis dolichopoda H… Chang Sheng… Shanping-Na… - 1972-08-03 TAPIR TAI148552 Liparis confusa S.S.Sm. T.P.Linn Shanping-Na… - 0000-00-00 DwC TAI115409 Liparis dolichopoda H… S.Sasaki Kaohsiung-T… - 1934-10-14 TAI115408 Liparis dolichopoda H… Kudo ( ) 1919-09-11 TAI033062 Liparis dolichopoda H… Y.Yamamoto Antungyeh ( ) 1928-01-05 TAI033061 Liparis dolichopoda H… Y.Yamamoto Antungyeh ( ) 1928-01-05 10 Search Refresh 1 /3 23 Row(s) -TESRI CollectionCode ScientificName Loading... Collector Locality TESRI8733 Liparis condylobulbo… 1996/9/11 10 Search Refresh 1 /1 1 Row(s) Map Satellite Hybrid Terrain 1-9 Erase the div 10 - 99 100 - 299 300 - 499 500 - : 40 * 40 100 mi Map data ©2009 Kingway, NFGIS, ZENRIN, Europa Technologies - Terms of Use 200 km / /
  • 46. 5
  • 47. ?