Proteins Move Based on Size


                                            lactase




                                        tyrosinase




                              Learning Set 3 : Lesson 1 : Slide 1
Analyzing LDL receptor


              A          B     C



                                            LDL
                                            receptor




                                                         Why did these LDL
                                                       receptor proteins move
  Normal LDL Receptors
                                                          farther down the
                                                              columns?


George’s LDL Receptors




                                                         Learning Set 3 : Lesson 1 : Slide 2
What Is The Difference Here?

Sequence of amino acids in LDL receptor protein:
  Column A
  MGPWGWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF
  WRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC
  EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC
  KDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV
  AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE
  VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV
  VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL
  AVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD
  GMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQALGDVAGRGNEKKPSSVR
  ALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSRQMVSLEDDV

  Column B
  VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL
  DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT
  KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN
  GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQY
  LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSH
  QALGDVAGRGNEKKPSSVRALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSRQMVSLED
  DV

  Column C
  MGPWGWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF
  WRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC
  EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC
  KDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV
  AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK

                                                                     Learning Set 3 : Lesson 1 : Slide 3
DNA Location




               Learning Set 3 : Lesson 2 : Slide 4
Chromosomes




              Learning Set 3 : Lesson 2 : Slide 5
Pieces to DNA Model




6 T (Orange)              1 base                  12 spacers               1 cap
6 A (Blue)                (light brown)           (transparent)            (white)
6 G (Green)
6 C (Yellow)




               1 rod (grey)                             2 side chains composed
               of alternating deoxyribose (red)
               and phosphate (purple)

                                                                                 Learning Set 3 : Lesson 3 : Slide 6
DNA Base Pairs

Given DNA Matching DNA Strand
    T
    G
    G
    C
    G
    C
    T
    G
    T
    G
                           Learning Set 3 : Lesson 3 : Slide 7
Pieces to LDL Receptor Protein
          DNA Model




                                 Learning Set 3 : Lesson 3 : Slide 8
Marshmallow Color Key


Marshmallow Color     Chemical Base

Orange                Thymine (T)

Pink                  Adenine (A)

Green                 Guanine (G)

Yellow                Cytosine (C)




                                      Learning Set 3 : Lesson 3 : Slide 9
Step by Step Pictures


Step #1:




                                   Learning Set 3 : Lesson 3 : Slide 10
Step by Step Pictures (cont.)


Step #2:




                                           Learning Set 3: Lesson 3: Slide 11
Step by Step Pictures (cont.)


Step #3:




                                           Learning Set 3 : Lesson 3 : Slide 12
Chromosomes to DNA to Genes
       How small is small?




                             Learning Set 3 : Lesson 4 : Slide 13
From DNA to Proteins
Transcription -Translation




                       Learning Set 3 : Lesson 4 : Slide 14
From DNA to Proteins 1




Transcription & Translation Overview




                                   Learning Set 3 : Lesson 4 : Slide 15
Symbols for Transcription -
   Translation Models




                        Learning Set 3 : Lesson 4 : Slide 16
DNA vs. RNA

DNA                               RNA




                    Learning Set 3 : Lesson 4 : Slide 17
DNA vs mRNA

DNA                 RNA




                      Learning Set 3 : Lesson 4 : Slide 18
From DNA to Proteins 2




Transcription & Translation Interactive Modeling




                                           Learning Set 3 : Lesson 4 : Slide 19
Coding Amino Acids




                     RNA
                     amino acid

                     Learning Set 3 : Lesson 4 : Slide 20
LDL Receptor




               Learning Set 3 : Lesson 4 : Slide 21
Where are our genes?




                       Learning Set 3 : Lesson 4 : Slide 22
Location of LDL Receptor Gene




                                Learning Set 3 : Lesson 4 : Slide 23
LDL Receptor Gene




Segment
focused on
in class




                                 Learning Set 3 : Lesson 3 : Slide 24
Marshmallow DNA Model




AC C G C GACAC



                        Learning Set 3 : Lesson 4 : Slide 25
RNA Marshmallow Color Key




Marshmallow Color        Chemical Base

White                    Uracil (U)

Pink                     Adenine (A)

Green                    Guanine (G)

Yellow                   Cytosine (C)




                                         Learning Set 3 : Lesson 4: Slide 26
Coding Amino Acids




                     RNA
                     amino acid

                     Learning Set 3 : Lesson 4 : Slide 27
Reviewing George’s Symptoms
         Familial Hypercholesterolemia (FH)
•   Very high cholesterol in blood

•   Waxy patches on the skin

•   Chest pain and heart attacks at a young age

•   Build up of fatty deposits on under skin and in arteries


       Knees and Fingers                      Coronary Artery: a heart artery


                                               Fatty
                                               Deposit
                                 Fatty
                                 Deposit




                                       28
                                                               Learning Set 3 : Lesson 5 : Slide 28
George’s Family History




     George
     Heart attack: 25y




                         Learning Set 3 : Lesson 5 : Slide 29
Why George had a Heart Attack
    Fatty Deposits                                     Cross Section of
    In Coronary Artery                                 Coronary Artery
                                                                    Tear in
                                         Normal                 artery wall
Fatty
Deposit



                                          Fatty
                                                                 Narrowed
                                       deposits
                                                                     artery
                                       made in
                                                                blocked by
                                         artery
                                                                 blood clot
                                           wall




 • Fatty deposits made in artery wall, high blood pressure
 • Arteries harden and narrow due to fat accumulation
 • Blood flow is reduced
 • Oxygen supply to heart reduced
 • Can cause chest pain heart attack or death in severe cases
                                         30
                                                                   Learning Set 3 : Lesson 5 : Slide 30
Cholesterol: Many Roles


Cholesterol                         Estrogen




                                    Testosterone




                                    Bile Acids

                         31
                                    Learning Set 3 : Lesson 5 : Slide 31
Low density lipoprotein (LDL) Receptor

cholesterol

                                      Cholesterol
                                      in LDL



                                          LDL Receptor

               outside cell                            Plasma
                                                       Membrane

  cell

                   inside cell
                                         Takes LDL into cell

     nucleus



                                 32
                                                      Learning Set 3 : Lesson 5 : Slide 32
Learning Set 3: Lesson 1
Analyzing George’s LDL receptor
A    B    C



                     LDL
                     receptor




                                George’s LDL receptor




                34
                                        Learning Set 3 : Lesson 5: Slide 34
Why did Rachel look at George’s DNA?

One of George’s
chromosomes,
chromosome 19, had
an arrow pointing at
one spot on it. This
arrow indicated
something was
different at this spot
on chromosome 19.



  What does DNA have to do with the
  LDL receptor that causes FH
  disease?               35
                               Learning Set 3 : Lesson 5 : Slide 35
Analyzing the Family’s DNA




George




                     36
                                      Learning Set 3 : Lesson 5 : Slide 36

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Learning Set 3: Lesson 1

  • 1. Proteins Move Based on Size lactase tyrosinase Learning Set 3 : Lesson 1 : Slide 1
  • 2. Analyzing LDL receptor A B C LDL receptor Why did these LDL receptor proteins move Normal LDL Receptors farther down the columns? George’s LDL Receptors Learning Set 3 : Lesson 1 : Slide 2
  • 3. What Is The Difference Here? Sequence of amino acids in LDL receptor protein: Column A MGPWGWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF WRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC KDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL AVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD GMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQALGDVAGRGNEKKPSSVR ALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSRQMVSLEDDV Column B VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQY LCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSH QALGDVAGRGNEKKPSSVRALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSRQMVSLED DV Column C MGPWGWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF WRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC KDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK Learning Set 3 : Lesson 1 : Slide 3
  • 4. DNA Location Learning Set 3 : Lesson 2 : Slide 4
  • 5. Chromosomes Learning Set 3 : Lesson 2 : Slide 5
  • 6. Pieces to DNA Model 6 T (Orange) 1 base 12 spacers 1 cap 6 A (Blue) (light brown) (transparent) (white) 6 G (Green) 6 C (Yellow) 1 rod (grey) 2 side chains composed of alternating deoxyribose (red) and phosphate (purple) Learning Set 3 : Lesson 3 : Slide 6
  • 7. DNA Base Pairs Given DNA Matching DNA Strand T G G C G C T G T G Learning Set 3 : Lesson 3 : Slide 7
  • 8. Pieces to LDL Receptor Protein DNA Model Learning Set 3 : Lesson 3 : Slide 8
  • 9. Marshmallow Color Key Marshmallow Color Chemical Base Orange Thymine (T) Pink Adenine (A) Green Guanine (G) Yellow Cytosine (C) Learning Set 3 : Lesson 3 : Slide 9
  • 10. Step by Step Pictures Step #1: Learning Set 3 : Lesson 3 : Slide 10
  • 11. Step by Step Pictures (cont.) Step #2: Learning Set 3: Lesson 3: Slide 11
  • 12. Step by Step Pictures (cont.) Step #3: Learning Set 3 : Lesson 3 : Slide 12
  • 13. Chromosomes to DNA to Genes How small is small? Learning Set 3 : Lesson 4 : Slide 13
  • 14. From DNA to Proteins Transcription -Translation Learning Set 3 : Lesson 4 : Slide 14
  • 15. From DNA to Proteins 1 Transcription & Translation Overview Learning Set 3 : Lesson 4 : Slide 15
  • 16. Symbols for Transcription - Translation Models Learning Set 3 : Lesson 4 : Slide 16
  • 17. DNA vs. RNA DNA RNA Learning Set 3 : Lesson 4 : Slide 17
  • 18. DNA vs mRNA DNA RNA Learning Set 3 : Lesson 4 : Slide 18
  • 19. From DNA to Proteins 2 Transcription & Translation Interactive Modeling Learning Set 3 : Lesson 4 : Slide 19
  • 20. Coding Amino Acids RNA amino acid Learning Set 3 : Lesson 4 : Slide 20
  • 21. LDL Receptor Learning Set 3 : Lesson 4 : Slide 21
  • 22. Where are our genes? Learning Set 3 : Lesson 4 : Slide 22
  • 23. Location of LDL Receptor Gene Learning Set 3 : Lesson 4 : Slide 23
  • 24. LDL Receptor Gene Segment focused on in class Learning Set 3 : Lesson 3 : Slide 24
  • 25. Marshmallow DNA Model AC C G C GACAC Learning Set 3 : Lesson 4 : Slide 25
  • 26. RNA Marshmallow Color Key Marshmallow Color Chemical Base White Uracil (U) Pink Adenine (A) Green Guanine (G) Yellow Cytosine (C) Learning Set 3 : Lesson 4: Slide 26
  • 27. Coding Amino Acids RNA amino acid Learning Set 3 : Lesson 4 : Slide 27
  • 28. Reviewing George’s Symptoms Familial Hypercholesterolemia (FH) • Very high cholesterol in blood • Waxy patches on the skin • Chest pain and heart attacks at a young age • Build up of fatty deposits on under skin and in arteries Knees and Fingers Coronary Artery: a heart artery Fatty Deposit Fatty Deposit 28 Learning Set 3 : Lesson 5 : Slide 28
  • 29. George’s Family History George Heart attack: 25y Learning Set 3 : Lesson 5 : Slide 29
  • 30. Why George had a Heart Attack Fatty Deposits Cross Section of In Coronary Artery Coronary Artery Tear in Normal artery wall Fatty Deposit Fatty Narrowed deposits artery made in blocked by artery blood clot wall • Fatty deposits made in artery wall, high blood pressure • Arteries harden and narrow due to fat accumulation • Blood flow is reduced • Oxygen supply to heart reduced • Can cause chest pain heart attack or death in severe cases 30 Learning Set 3 : Lesson 5 : Slide 30
  • 31. Cholesterol: Many Roles Cholesterol Estrogen Testosterone Bile Acids 31 Learning Set 3 : Lesson 5 : Slide 31
  • 32. Low density lipoprotein (LDL) Receptor cholesterol Cholesterol in LDL LDL Receptor outside cell Plasma Membrane cell inside cell Takes LDL into cell nucleus 32 Learning Set 3 : Lesson 5 : Slide 32
  • 34. Analyzing George’s LDL receptor A B C LDL receptor George’s LDL receptor 34 Learning Set 3 : Lesson 5: Slide 34
  • 35. Why did Rachel look at George’s DNA? One of George’s chromosomes, chromosome 19, had an arrow pointing at one spot on it. This arrow indicated something was different at this spot on chromosome 19. What does DNA have to do with the LDL receptor that causes FH disease? 35 Learning Set 3 : Lesson 5 : Slide 35
  • 36. Analyzing the Family’s DNA George 36 Learning Set 3 : Lesson 5 : Slide 36