Bias in estimates of
palaeobiodiversity: beyond the
  marine macrofossil record

        Graeme T. Lloyd
Modern diversity is vast…
…but all stems from a single ancestor
How did life get so diverse?




  Last
Universal
Common
Ancestor
                 ?
How did life get so diverse?




  Last
Universal
Common
Ancestor
Extant vs. fossil record

                   Red – lineage through time plot based
                   on extant data only

                   Navy – lineage through time plot
                   based on fossil data




                                        Ezard et al. 2011
Sepkoski’s compendia
But can we trust the curves?




David Raup




                      Miller 2009, after Raup 1972
Raup’s two solutions


           Subsampling




           Modeling




                         Alroy 2010; Lloyd 2012
Common cause hypothesis
Collating the data –early curves




                               Peters 2005
Beyond the marine macrofossils…
Collating the data –early curves

     ?                      ?
 Open ocean   Shelf     Terrestrial
Dinosaurs data –early curves
Collating the



 Open ocean   Shelf     Terrestrial
Dinosaurs – data –early curves
Collating the common cause
         Non-marine     Haq SL
         surface area




          Packages        Miller SL




  DBCs

DBFs


                                      Butler et al. 2011
Dinosaurs – data –early curves
Collating the sampling bias

                    Dinosaur-bearing localities

                    Palaeoarea covered

                    Phylogenetic diversity

                    Taxonomic diversity

                    Dinosaur-bearing formations




                                     Benton et al. 2011
Dinosaurs - subsampling
Collating the data –early curves
                Raw + ghosts
        Raw




                      Subsampled




                                   Lloyd et al. 2008
Dinosaurs - modeling curves
Collating the data –early




                           Lloyd 2012
Coccolithophores–early curves
Collating the data



 Open ocean    Shelf     Terrestrial
Coccolithophores–early curves
Collating the data




                           Lloyd et al. 2012
Coccolithophores–early curves
Collating the data


            vs.
Coccolithophores–early curves
Collating the data - database




                      Yellow pins – ODP/DSDP




                  Green pins – Land-based localities
Coccolithophores–early curves
Collating the data – species




                           Lloyd et al. 2012
Coccolithophores–early curves
Collating the data – sampling




                           Lloyd et al. 2012
Coccolithophores–early curves
    Collating the data – correlation
  richness
             rho = 0.02

                              richness
                                         sampling

             sampling
rho = 0.40                rho = 0.48




                                               Lloyd et al. 2012
Coccolithophores–early curves
Collating the data – subsampling



 J   K   Pg+Ng    J   K   Pg+Ng




                           Lloyd et al. 2012
Coccolithophores–early curves
Collating the data – modeling



 J   K   Pg+Ng    J    K   Pg+Ng




                            Lloyd et al. 2012
Fishes the data –early curves
Collating



 Open ocean    Shelf     Terrestrial
Fishes – the data –early curves
Collating global curves

    Agassiz 1843         Carroll 1988




    Benton 1993         Sepkoski 2002




                       Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating global curves

    Agassiz 1843                  Carroll 1988




                                      R^2 = 0.74
    Benton 1993                  Sepkoski 2002

                   R^2 = 0.91




                                Lloyd and Friedman, accepted
Fishes - database–early curves
Collating the data




                      Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating raw diversity




                       Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating proxies

    Formations




    Localities




    Grids


                           Lloyd and Friedman,
                           accepted
Fishes – the data –early curves
Collating correlations

                                    Formations
                    rho = 0.64
       rho = 0.71




   Localities                          Grids




                                 Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating multivariate modeling




                       Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating subsampling




                       Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating modeling

    Formations




    Localities




    Grids

                           Lloyd and Friedman,
                           accepted
Fishes – the data –early curves
Collating cartilage vs. bone




                       Lloyd and Friedman, accepted
Fishes – the data –early curves
Collating cartilage vs. bone
              rho = 0.83   rho = 0.44

Formations




             rho = 0.53    rho = 0.20

Localities




             rho = 0.56    rho = 0.21

Grids



                           Lloyd and Friedman, accepted
Conclusions data –early curves
Collating the
                           ?



        Sampling bias                  Sampling bias



                        Common cause
Acknowledgements
  Collating the data –early curves


   Michael     Steve      Katie        Matt     Dave      Rachel
   Benton     Brusatte    Davis     Friedman    Hone     Jennings




Davide         Paul      Marcello   Manabu     Andrew   James       Jeremy
Pisani       Pearson      Ruta      Sakamot     Smith   Tarver       Young
                                       o
Papers, data, R code etc.
Collating the data –early curves



  http://www.graemetlloyd.com/

More Related Content

PPTX
Are palaeobiodiversity patterns more apparent than real?
PPTX
Are our estimates of palaeobiodiversity more apparent than real?
PPTX
Geological controls on palaeobiodiversity: beyond the marine macrofossil record
PPTX
Fossil Record - Paleontology Geo-science
PPTX
A new approach to visualizing the topology space of all possible phylogenetic...
PPTX
A novel metatree approach to generating large phylogenetic hypotheses of exti...
PPTX
Measuring morphological diversity and tempo using discrete characters: advant...
PPTX
Phylogenetic diversity through deep time: an exploration using Mesozoic dinos...
Are palaeobiodiversity patterns more apparent than real?
Are our estimates of palaeobiodiversity more apparent than real?
Geological controls on palaeobiodiversity: beyond the marine macrofossil record
Fossil Record - Paleontology Geo-science
A new approach to visualizing the topology space of all possible phylogenetic...
A novel metatree approach to generating large phylogenetic hypotheses of exti...
Measuring morphological diversity and tempo using discrete characters: advant...
Phylogenetic diversity through deep time: an exploration using Mesozoic dinos...

More from Graeme Lloyd (20)

PPTX
Time-binning rates of continuous character evolution on a phylogeny: the orig...
PPTX
Detecting phylogenetic signals of endemism and dispersal: the effects of Pang...
PPTX
Generating new models for detecting phylogenetic signals of endemism and disp...
PPTX
Automated generation of large phylogenies and a probabilistically time-scaled...
PPTX
New methodologies for the use of cladistic-type matrices to measure morpholog...
PPTX
A probabilistically time-scaled 1,000-taxon phylogenetic hypothesis for Mesoz...
PPTX
How does Evolutionary Distinctiveness change when we place fossils in the tree?
PPTX
A new R package for automating cladistic ordination and the effects of phylog...
PPTX
A novel method for time-binning rates of continuous character evolution on a ...
PPTX
Claddis: a new R package for automating disparity analyses based on cladistic...
PPTX
Beyond the lower-bound: the fossil record can provide empirically-informed pr...
PPT
What the deep sea tells us about sampling biases in the fossil record
PPT
Is there a bias in deep sea diversity patterns?
PPT
Adventures in protein world reveal the Tree of Life and the evolution of comp...
PPT
Adventures in protein world reveal the Tree of Life and the evolution of comp...
PPTX
A new non-minimal algorithm for dating phylogenies of fossil taxa
PPTX
Confidence intervals on node age estimates in vertebrate phylogeny
PPTX
Effects of ancestral character estimation on methods for estimating rates of ...
PPT
400-million years of 'fishes': a survey of sampling biases based on the UK re...
PPT
Different records give different curves: comparing deep sea and land-based pa...
Time-binning rates of continuous character evolution on a phylogeny: the orig...
Detecting phylogenetic signals of endemism and dispersal: the effects of Pang...
Generating new models for detecting phylogenetic signals of endemism and disp...
Automated generation of large phylogenies and a probabilistically time-scaled...
New methodologies for the use of cladistic-type matrices to measure morpholog...
A probabilistically time-scaled 1,000-taxon phylogenetic hypothesis for Mesoz...
How does Evolutionary Distinctiveness change when we place fossils in the tree?
A new R package for automating cladistic ordination and the effects of phylog...
A novel method for time-binning rates of continuous character evolution on a ...
Claddis: a new R package for automating disparity analyses based on cladistic...
Beyond the lower-bound: the fossil record can provide empirically-informed pr...
What the deep sea tells us about sampling biases in the fossil record
Is there a bias in deep sea diversity patterns?
Adventures in protein world reveal the Tree of Life and the evolution of comp...
Adventures in protein world reveal the Tree of Life and the evolution of comp...
A new non-minimal algorithm for dating phylogenies of fossil taxa
Confidence intervals on node age estimates in vertebrate phylogeny
Effects of ancestral character estimation on methods for estimating rates of ...
400-million years of 'fishes': a survey of sampling biases based on the UK re...
Different records give different curves: comparing deep sea and land-based pa...
Ad

Recently uploaded (20)

PDF
BP 704 T. NOVEL DRUG DELIVERY SYSTEMS (UNIT 1)
PDF
English Textual Question & Ans (12th Class).pdf
PPTX
ELIAS-SEZIURE AND EPilepsy semmioan session.pptx
PDF
Vision Prelims GS PYQ Analysis 2011-2022 www.upscpdf.com.pdf
PPTX
B.Sc. DS Unit 2 Software Engineering.pptx
PPTX
What’s under the hood: Parsing standardized learning content for AI
DOCX
Cambridge-Practice-Tests-for-IELTS-12.docx
PPTX
Module on health assessment of CHN. pptx
PDF
semiconductor packaging in vlsi design fab
PDF
BP 704 T. NOVEL DRUG DELIVERY SYSTEMS (UNIT 2).pdf
PDF
Journal of Dental Science - UDMY (2022).pdf
PPTX
Core Concepts of Personalized Learning and Virtual Learning Environments
PDF
Race Reva University – Shaping Future Leaders in Artificial Intelligence
PDF
Environmental Education MCQ BD2EE - Share Source.pdf
PDF
FORM 1 BIOLOGY MIND MAPS and their schemes
PDF
Journal of Dental Science - UDMY (2020).pdf
PDF
CISA (Certified Information Systems Auditor) Domain-Wise Summary.pdf
PDF
BP 505 T. PHARMACEUTICAL JURISPRUDENCE (UNIT 1).pdf
PPTX
Climate Change and Its Global Impact.pptx
PDF
My India Quiz Book_20210205121199924.pdf
BP 704 T. NOVEL DRUG DELIVERY SYSTEMS (UNIT 1)
English Textual Question & Ans (12th Class).pdf
ELIAS-SEZIURE AND EPilepsy semmioan session.pptx
Vision Prelims GS PYQ Analysis 2011-2022 www.upscpdf.com.pdf
B.Sc. DS Unit 2 Software Engineering.pptx
What’s under the hood: Parsing standardized learning content for AI
Cambridge-Practice-Tests-for-IELTS-12.docx
Module on health assessment of CHN. pptx
semiconductor packaging in vlsi design fab
BP 704 T. NOVEL DRUG DELIVERY SYSTEMS (UNIT 2).pdf
Journal of Dental Science - UDMY (2022).pdf
Core Concepts of Personalized Learning and Virtual Learning Environments
Race Reva University – Shaping Future Leaders in Artificial Intelligence
Environmental Education MCQ BD2EE - Share Source.pdf
FORM 1 BIOLOGY MIND MAPS and their schemes
Journal of Dental Science - UDMY (2020).pdf
CISA (Certified Information Systems Auditor) Domain-Wise Summary.pdf
BP 505 T. PHARMACEUTICAL JURISPRUDENCE (UNIT 1).pdf
Climate Change and Its Global Impact.pptx
My India Quiz Book_20210205121199924.pdf
Ad

Bias in estimates of palaeobiodiversity: beyond the marine macrofossil record