BioHackathon 2010 Intro
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Brad Chapman is a molecular biologist affiliated with the Department of Molecular Biology at Massachusetts General Hospital in Boston. He works on the open source Biopython project for biological computation using Python. His projects involve next generation sequencing, comparative genomics, and synthetic biology across many organisms. He is also interested in hackathons to learn about and implement tools for simplifying access to biological data in RDF formats.
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BioHackathon 2010 Intro
- 1. Brad Chapman Affiliation Department of Molecular Biology Massachusetts General Hospital, Boston, US Projects Biopython: http://biopython.org Contacts chapmanb@50mail.com http://bcbio.wordpress.com http://friendfeed.com/chapmanb http://www.linkedin.com/pub/ brad-chapman/3/300/8ba
- 2. Biology Many organisms (Human, Mouse, Arabidopsis, C elegans) Next generation sequencing Comparative genomics Synthetic biology
- 3. Computation Open source software (Python) Web presentation (Galaxy) Visualization (R) Data availability (REST)
- 4. Hackathon Learn Existing RDF data resources Approaches for storing/querying data Implement Python libraries to simplify data access Tools to ease providing RDF content