Bio::Phylo - phyloinformatic analysis using perl
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Bio::Phylo is a BioPerl-compatible phyloinformatics toolkit that implements EvoIO concepts and technologies. It can be used for phyloinformatics workflows and data transformation, PhyloWS servers and clients, visualization, and analysis and simulation of tree shapes. Future directions include tighter integration with BioPerl, extending PhyloWS functionality, and SWIG backends for other tools like HyPhy, NCL, and Beagle.
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Bio::Phylo - phyloinformatic analysis using perl
- 1. Bio::Phylo – Phyloinformatic analysis using Perl Rutger Vos
- 2. Introduction Bio::Phylo is a BioPerl-‐compa1ble phyloinforma1c toolkit that implements EvoIO concepts and technologies
- 3. Use Cases PhyloInforma1c workflows, data transforma1on PhyloWS servers and clients Visualiza:on Analysis and simula1on of tree shapes
- 4. Future Directions Tighter integra1on in BioPerl Extending PhyloWS func1onality SWIG backends, e.g. HyPhy, NCL, Beagle
- 5. Learn More hKp://search.cpan.org/dist/Bio-‐Phylo Or google Bio::Phylo Or @rvosa Computa1onal Phyloinforma1cs: A BGI-‐Shenzhen and NESCent Course (August 5-‐17 2010)
- 6. Acknowledgements Jason Caravas Klaas Hartmann Mark Jensen Chase Miller Aki Mimoto