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Origin of Life on Earth
“Beginnings of Cellular Life”
                   Harold Horowitz (1992)
• All life is cellular.
• All living things are from 50 to over 90% water,
   the source of protons, hydrogen and oxygen in
   photosynthesis and the solvent of biomolecules.
• The major elements of covalently bound
   biomolecules are carbon, hydrogen, nitrogen,
   oxygen, phosphorus and sulfur.
• There is a universal set of small molecules: (i.e.
   sugars, amino acids, nucleotides, fatty acids,
   phospholipids, vitamins and coenzymes.)
* The principle macromolecules are proteins,
lipids, carbohydrates and nucleic acids.
“Beginnings of Cellular Life”
                Harold Horowitz (1992)
• There is a universal type of membrane structure
  (lipid bilayer).
• The flow of energy in living things involves formation
  and hydrolysis of phosphate bonds, usually ATP.

• The metabolic reactions of any living species is a
  subset of a universal network of intermediary
  metabolism (glycolysis, the Krebs cycle, the electron
  transport chain)

• Every replicating cell has a genome made of DNA
  that stores the genetic information of the cell which
  is read out in sequences of RNA and translated into
  protein.
“Beginnings of Cellular Life”
               Harold Horowitz (1992)

• All growing cells have ribosomes, which are the
  sites of protein synthesis.

• All living things translate information from
  nucleotide language through specific activating
  enzymes and transfer RNAs.

• All replicating biological systems give rise to
  altered phenotype due to mutated genotypes.

• Reactions that proceed at appreciable rates in
  all living cells are catalyzed by enzymes.
Life from inanimate matter?
*Spontaneous interaction of simple molecules
(ammonia, phosphates, methane, UV light, heat,
electricity, lightning) = primordial organic soup
(Haldane & Oparin)


Primary QUESTIONS:
(1) Where did the raw materials for life come
    from?
(2) How did monomers develop?
(3) How did polymers develop?
(4) How did an isolated cell form?
Where did the raw materials for life come
                 from?
Electric sparks can generate amino acids
and sugars from an atmosphere loaded with
water, methane, ammonia and hydrogen, as
was shown in the famous Miller-Urey
experiment (1953) = LIGHTNING created
building blocks of life on Earth.
- similar amino acids from Murchison
meteorite
Community Clay
        (Alexander Graham Cairns-Smith)
• Polymerization on clays or the evaporation of
  amino acids containing water near volcanic vents
- Sidney Fox experiment:
     heated amino acids = proteinoids
• The first molecules of life might have met on
  clay
• Mineral crystals in clay could have arranged
  organic molecules into organized patterns.
  After a while, organic molecules took over
  this job and organized themselves.
Deep Sea Vent Theory
- Suggests that life may have begun at submarine
  hydrothermal vents, spewing key hydrogen-rich
  molecules. Their rocky nooks could have
  concentrated these molecules & provided mineral
  catalysts for critical reactions.
Chilly Start
- Ice might have covered the oceans 3 billion
years ago, as the sun was about a third less
luminous than it is now.
- This layer of ice, possibly hundreds of feet
thick, might have protected fragile organic
compounds in the water below from
ultraviolet light and destruction from cosmic
impacts.
- The cold might have also helped these
molecules to survive longer, allowing key
reactions to happen.
RNA World
• DNA needs proteins in order to form, and
  proteins require DNA to form, so how could
  these have formed without each other?

     RNA = store info like DNA, serve as an
  enzyme,       & help create both DNA &
  proteins.
     Question remains: how was RNA created in
  the
                       1st place?
Self-Replicating RNA and the Dawn of Natural
                     Selection
RNA molecules called ribozymes have been found to
catalyze many different reactions
   – For example, ribozymes can make complementary
     copies of short stretches of their own sequence or other
     short pieces of RNA
• Early protobionts with self-replicating, catalytic RNA
  would have been more effective at using resources and
  would have increased in number through natural
  selection
• The early genetic material might have formed an “RNA
  world”
Protobionts
• Replication and metabolism are key properties of
  life
• Protobionts are aggregates of abiotically produced
  molecules surrounded by a membrane or
  membrane-like structure
• Protobionts exhibit simple reproduction and
  metabolism and maintain an internal chemical
  environment
Endosymbiosis Hypothesis
• Proposes that mitochondria and plastids
  (chloroplasts and related organelles) were
  formerly small prokaryotes living within larger
  host cells
• An endosymbiont is a cell that lives within a
  host cell
Fig. 25-9-4
                                        Cytoplasm
              Plasma membrane
                      Ancestral          DNA
                      prokaryote


                Endoplasmic reticulum            Nucleus
                      Nuclear envelope

                Aerobic
                heterotrophic                   Photosynthetic
                prokaryote                      prokaryote

                Mitochondrion
                 Ancestral                          Mitochondrion
                 heterotrophic
                 eukaryote                       Plastid

                                          Ancestral photosynthetic
                                          eukaryote
Panspermia
• Svante Arrhenius in 1908
• Perhaps life did not begin on Earth at all but was
  brought here from elsewhere in space

• Rocks regularly get blasted off Mars by cosmic
  impacts reaching Earth.

• Martian meteorites brought microbes on Earth
  thereby evolving into complex systems.

• Other scientists have suggested that life might
  have hitchhiked on comets/ portals from other
  star systems
Fig. 25-7



                                                  Humans


            Colonization
            of land

                Animals                                      Origin of solar
                                                             system and
                                                             Earth




                                  1                             4

                                  Proterozoic    Archaean
                                                                               Prokaryotes


                                       2                 3
            Multicellular
            eukaryotes


                  Single-celled
                  eukaryotes
                                           Atmospheric
                                           oxygen
Table 25-1a
Table 25-1b
Fig. 25-13


             Present




                                            Cenozoic
                                                                    Eurasia

                                                                  Africa
                                     65.5                                     India
                                                        South
                                                        America       Madagascar

                                                              Antarctica




             Millions of years ago
                                     135


                                            Mesozoic




                                     251
                                            Paleozoic
Cell Theory

Theodore Schwann, Matthias
 Schleiden & Rudolf Virchow
Schwann & Schleiden 1839
1. The cell is the basic unit structure,
   physiology, and organization in living
   things.
2. The cells retains a dual existence as a
   distinct identity and a building block in the
   construction of organism.
 Virchow 1858: All cells came from pre-
2. Cells form (Omnis cellula e cellula).
 existing cells by free-cell formation, similar
   to the formation of crystal (spontaneous
   generation)
Modern Cell Theory
1. All known living things are made up of cells
2. The cell is structural and functional unit of all
   living things
3. All cells comes from pre-existing cells by
   division.
4. Cells contains hereditary information which
   is passed from cell to cell by division
5. All cells are basically the same in chemical
   composition
6. All energy flow (metabolism and
biochemistry) of life occurs within the cells
The End!
Primordial Soup Theory
- Russian Chemist A.I. Oparin and English
  Geneticist J.B.S. Haldane in 1920.
- basic building blocks of life came from
  simple molecule then energized by
  lightning and the rain from the atmosphere
  created the "organic soup”.
- The first organisms would have to be
  simple heterotrophs. In order to survive,
  they consume other organisms for energy.
  They would become autotrophs by
  mutation. Evidence now suggest the first
  organisms were autotrophs.
Urey-Miller Experiment (1950)
- They mixed gases thought to be present
  on primitive earth: ammonia, methane,
  water, hydrogen
- then electrically sparked the mixture to
  signify lightning = amino acids
- electricity, UV light, heat, & shock
- Sidney Fox experiment:
     heated amino acids = proteinoids
Simple Beginnings
• Instead of developing from complex
  molecules such as RNA, life might have
  begun with smaller molecules interacting with
  each other in cycles of reactions.
• These might have been contained in simple
  capsules akin to cell membranes, and over
  time more complex molecules that performed
  these reactions better than the smaller ones
  could have evolved
• "metabolism-first" models, as opposed to the
  "gene-first" model of the "RNA world"
  hypothesis.

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BOTANY LECTURE 2

  • 1. Origin of Life on Earth
  • 2. “Beginnings of Cellular Life” Harold Horowitz (1992) • All life is cellular. • All living things are from 50 to over 90% water, the source of protons, hydrogen and oxygen in photosynthesis and the solvent of biomolecules. • The major elements of covalently bound biomolecules are carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur. • There is a universal set of small molecules: (i.e. sugars, amino acids, nucleotides, fatty acids, phospholipids, vitamins and coenzymes.) * The principle macromolecules are proteins, lipids, carbohydrates and nucleic acids.
  • 3. “Beginnings of Cellular Life” Harold Horowitz (1992) • There is a universal type of membrane structure (lipid bilayer). • The flow of energy in living things involves formation and hydrolysis of phosphate bonds, usually ATP. • The metabolic reactions of any living species is a subset of a universal network of intermediary metabolism (glycolysis, the Krebs cycle, the electron transport chain) • Every replicating cell has a genome made of DNA that stores the genetic information of the cell which is read out in sequences of RNA and translated into protein.
  • 4. “Beginnings of Cellular Life” Harold Horowitz (1992) • All growing cells have ribosomes, which are the sites of protein synthesis. • All living things translate information from nucleotide language through specific activating enzymes and transfer RNAs. • All replicating biological systems give rise to altered phenotype due to mutated genotypes. • Reactions that proceed at appreciable rates in all living cells are catalyzed by enzymes.
  • 5. Life from inanimate matter? *Spontaneous interaction of simple molecules (ammonia, phosphates, methane, UV light, heat, electricity, lightning) = primordial organic soup (Haldane & Oparin) Primary QUESTIONS: (1) Where did the raw materials for life come from? (2) How did monomers develop? (3) How did polymers develop? (4) How did an isolated cell form?
  • 6. Where did the raw materials for life come from? Electric sparks can generate amino acids and sugars from an atmosphere loaded with water, methane, ammonia and hydrogen, as was shown in the famous Miller-Urey experiment (1953) = LIGHTNING created building blocks of life on Earth. - similar amino acids from Murchison meteorite
  • 7. Community Clay (Alexander Graham Cairns-Smith) • Polymerization on clays or the evaporation of amino acids containing water near volcanic vents - Sidney Fox experiment: heated amino acids = proteinoids • The first molecules of life might have met on clay • Mineral crystals in clay could have arranged organic molecules into organized patterns. After a while, organic molecules took over this job and organized themselves.
  • 8. Deep Sea Vent Theory - Suggests that life may have begun at submarine hydrothermal vents, spewing key hydrogen-rich molecules. Their rocky nooks could have concentrated these molecules & provided mineral catalysts for critical reactions.
  • 9. Chilly Start - Ice might have covered the oceans 3 billion years ago, as the sun was about a third less luminous than it is now. - This layer of ice, possibly hundreds of feet thick, might have protected fragile organic compounds in the water below from ultraviolet light and destruction from cosmic impacts. - The cold might have also helped these molecules to survive longer, allowing key reactions to happen.
  • 10. RNA World • DNA needs proteins in order to form, and proteins require DNA to form, so how could these have formed without each other? RNA = store info like DNA, serve as an enzyme, & help create both DNA & proteins. Question remains: how was RNA created in the 1st place?
  • 11. Self-Replicating RNA and the Dawn of Natural Selection RNA molecules called ribozymes have been found to catalyze many different reactions – For example, ribozymes can make complementary copies of short stretches of their own sequence or other short pieces of RNA • Early protobionts with self-replicating, catalytic RNA would have been more effective at using resources and would have increased in number through natural selection • The early genetic material might have formed an “RNA world”
  • 12. Protobionts • Replication and metabolism are key properties of life • Protobionts are aggregates of abiotically produced molecules surrounded by a membrane or membrane-like structure • Protobionts exhibit simple reproduction and metabolism and maintain an internal chemical environment
  • 13. Endosymbiosis Hypothesis • Proposes that mitochondria and plastids (chloroplasts and related organelles) were formerly small prokaryotes living within larger host cells • An endosymbiont is a cell that lives within a host cell
  • 14. Fig. 25-9-4 Cytoplasm Plasma membrane Ancestral DNA prokaryote Endoplasmic reticulum Nucleus Nuclear envelope Aerobic heterotrophic Photosynthetic prokaryote prokaryote Mitochondrion Ancestral Mitochondrion heterotrophic eukaryote Plastid Ancestral photosynthetic eukaryote
  • 15. Panspermia • Svante Arrhenius in 1908 • Perhaps life did not begin on Earth at all but was brought here from elsewhere in space • Rocks regularly get blasted off Mars by cosmic impacts reaching Earth. • Martian meteorites brought microbes on Earth thereby evolving into complex systems. • Other scientists have suggested that life might have hitchhiked on comets/ portals from other star systems
  • 16. Fig. 25-7 Humans Colonization of land Animals Origin of solar system and Earth 1 4 Proterozoic Archaean Prokaryotes 2 3 Multicellular eukaryotes Single-celled eukaryotes Atmospheric oxygen
  • 19. Fig. 25-13 Present Cenozoic Eurasia Africa 65.5 India South America Madagascar Antarctica Millions of years ago 135 Mesozoic 251 Paleozoic
  • 20. Cell Theory Theodore Schwann, Matthias Schleiden & Rudolf Virchow
  • 21. Schwann & Schleiden 1839 1. The cell is the basic unit structure, physiology, and organization in living things. 2. The cells retains a dual existence as a distinct identity and a building block in the construction of organism. Virchow 1858: All cells came from pre- 2. Cells form (Omnis cellula e cellula). existing cells by free-cell formation, similar to the formation of crystal (spontaneous generation)
  • 22. Modern Cell Theory 1. All known living things are made up of cells 2. The cell is structural and functional unit of all living things 3. All cells comes from pre-existing cells by division. 4. Cells contains hereditary information which is passed from cell to cell by division 5. All cells are basically the same in chemical composition 6. All energy flow (metabolism and biochemistry) of life occurs within the cells
  • 24. Primordial Soup Theory - Russian Chemist A.I. Oparin and English Geneticist J.B.S. Haldane in 1920. - basic building blocks of life came from simple molecule then energized by lightning and the rain from the atmosphere created the "organic soup”. - The first organisms would have to be simple heterotrophs. In order to survive, they consume other organisms for energy. They would become autotrophs by mutation. Evidence now suggest the first organisms were autotrophs.
  • 25. Urey-Miller Experiment (1950) - They mixed gases thought to be present on primitive earth: ammonia, methane, water, hydrogen - then electrically sparked the mixture to signify lightning = amino acids - electricity, UV light, heat, & shock - Sidney Fox experiment: heated amino acids = proteinoids
  • 26. Simple Beginnings • Instead of developing from complex molecules such as RNA, life might have begun with smaller molecules interacting with each other in cycles of reactions. • These might have been contained in simple capsules akin to cell membranes, and over time more complex molecules that performed these reactions better than the smaller ones could have evolved • "metabolism-first" models, as opposed to the "gene-first" model of the "RNA world" hypothesis.