Bruno Progress Report
- 1. SCAR-MarBIN.be Progress Report - workshop 09 Held at the British Antarctic Survey, hosted by Katrin Linse & Huw Griffiths
- 2. Background
- 3. SCAR-MarBIN Marine Biodiversity Information Network • Funding: Belgian science Policy office • International Polar Year 2007/08 • Census of Antarctic Marine Life • Ocean Biogeographic Information System • Global Biodiversity Information Network • Encyclopedia of Life
- 4. Philosophy • Build a network • Offer free and open access to data and technology • Expose all the (biodiversity) data and metadata • Remain community-driven • Adopt strong standardization • Work for science, conservation, management Riddle, M. Australian Antarctic Division
- 5. What sort of data? • Primary Biodiversity data • Taxonomy and Systematics • Occurence/abundance data • Genetic data • DwC
- 7. Present situation • BAD NEWS: • BELSPO Funding Ended • No developper • GOOD NEWS: • International contributions • New project to keep MarBIN alive
- 8. Results
- 9. Tangible results • The first RAMS • Board of 60 editors • Feeds WoRMS, CoL and EoL • 16,224 taxa • 9,253 species • 8,211 valid species • 10,605 checked taxa (65%)
- 10. Tangible results all taxa all species valid species 0 3.750 7.500 11.250 15.000 Acanthocephala Annelida Arthropoda Brachiopoda Bryozoa Cephalorhyncha Chaetognatha Chordata Cnidaria Ctenophora Echinodermata Echiura Hemichordata Mesozoa Mollusca Myxozoa Nematoda Nemertina Platyhelminthes Porifera Rotifera Sipuncula Tardigrada
- 11. Tangible results all taxa all species valid species 0 500 1.000 1.500 2.000 Biliphyta Viridaeplantae Protoctista Stramenopila Monera Chromista
- 12. Tangible results 1,031,732 records 138 datasets over 5,200 taxa Downloadable WebGIS Webservices OGC +RESTish
- 13. Synthesizing knowledge • RAMS: information on 16,000 taxa • ANTOBIS: 1,000,000+ records • Polar Macroscope Synthesis team • Injection into conservation processes • New insights in biogeography • New insights in ecological processes
- 14. Meetings attended • e-Biosphere 09 • OBIS MC 09 • GBIF GB 09 • WCMC 09 • Diversitas 09 • SCAR-OSC 09
- 15. Funding • BELSPO: down, funding new project • SCAR: 5 kUSD per year • CAML: 20 kUSD one shot (for 2009-10) • AAD: 6k AUD (two years) • German Science Foundation: 5 kEUR (two years) • Dutch Science Foundation: 5 kUSD (one year) • AWI: 7 kEUR (two years) • ArcOD: 3 kUSD one shot • TOTAL Foundation: 260 kEUR one shot
- 16. Applications
- 17. Identifying gaps Griffiths HJ, British Antarctic Survey
- 18. All Species
- 19. Identifying gaps Over 50% of samples taken in waters shallower than 400m Similar trend for recorded benthic species Most of the Southern Ocean is abyssal Griffiths HJ, Clarke A, Danis B, submitted
- 20. Identifying gaps 2,8 isopod species are descibed every year De Broyer C & Danis B, submitted 600+ were discovered during ANDEEP We will need 214 years to describe them!
- 21. Webportal V2.0
- 22. SCAR-MarBIN V2 •Main goals • Better, faster, simpler • Improve usability • Improve interoperability • Improve dissemination and visibility • Extend functionalities
- 29. Systems comparison V1 V2 Languages PHP4 (procedural part OOish) Java, Groovy (100% OO) Design patterns - MVC-ORM-AOP-IoC… Framework - (100% homebrew) Grails (Spring, Hibernate),YUI Template engine - SiteMesh Search engine SQL-based Full text (SOLR-lucene) DB SQL server SQL server - PostGresql GIS server mapserver Geoserver Spatial DB - PostGIS Mapping client chameleon openLayers Web services SOAP (RAMS) RESTish (all resources) OS Windows server FreeBSD Open source Partly 100% (minus legacy DB)
- 30. I know you love stats
- 31. 0 3.000 6.000 sept-05 déc-05 mars-06 juin-06 sept-06 déc-06 mars-07 juin-07 sept-07 déc-07 Unique visitors mars-08 juin-08 sept-08 Portal useage déc-08 mars-09 juin-09 sept-09
- 32. 0 10.000 20.000 sept-05 déc-05 mars-06 juin-06 sept-06 déc-06 mars-07 juin-07 sept-07 déc-07 bandwidth mars-08 juin-08 sept-08 Portal useage déc-08 mars-09 juin-09 sept-09
- 33. 0 2.000 4.000 sept-05 déc-05 mars-06 juin-06 sept-06 déc-06 mars-07 juin-07 sept-07 déc-07 bandwidth mars-08 juin-08 sept-08 Portal useage déc-08 mars-09 juin-09 sept-09
- 34. Unknown Belgium Network 2007 connections origin (hits) Commercial Germany Poland Italy Spain Unknown France Brazil 1%0% 0% 1% 0% 1%1% 1%1% 1%1% United Kingdom 1% 2% 2% Canada 2% 30% Australia 8% Russian Federation 2% USA Educational 3% Non-Profit Organizations 2% 4% Netherlands 16% Japan 8% Argentina 11% Moldova Chile Portugal Greece Ukraine
- 35. Unknown Commercial Belgium 2008 connections origin (hits) Network France Poland Germany United Kingdom Russian Federation Canada Brazil 3%1%0% 1% 1%0% 0% 1%0% 1%0% 0% Spain 1% 1% Unknown 1% 2% 2% USA Educational 2% 4% 41% Italy Australia 7% Netherlands Japan 8% Singapore Latvia 20% Chile Argentina New Zealand Non-Profit Organizations China
- 36. Unknown Commercial United Kingdom 2009 connections origin (hits) Network Belgium Germany Poland Brazil Russian Federation Italy Spain 1%1%0% 0% 0% 1%1% 0% 0% 1%0% Canada 1%0% 2% 1% 2% USA Educational 2% 2% France 5% Singapore 45% 7% Australia Argentina 5% Bahamas Japan 21% Israel Ukraine New Zealand Denmark Netherlands China
- 37. Distribution data providers datasets records % of datamass Argentina 2 374 0,036249724 Australia Belgium 29 8 740243 10804 71,747605 1,047171165 16 countries France Germany 2 2 4293 7598 0,416096428 0,736431554 providing data International 3 71236 6,904506209 Italy 2 683 0,066199362 Japan 1 19 0,001841564 New-Zealand 1 47865 4,639286171 Norway 2 69 0,006687783 Poland 1 87 0,008432422 Russia 1 2504 0,242698685 Spain 1 25 0,00242311 Ukraine 1 592 0,057379242 United Kingdom 5 48797 4,729619707 USA 11 96543 9,357371876 TOTAL 72 1114108 100
- 38. Metadata providers metadata records %metadata Australia Belgium 36 14 26,08695652 10,14492754 22 countries Poland BoL 13 12 9,420289855 8,695652174 providing United Kingdom International 11 9 7,971014493 6,52173913 metadata USA 9 6,52173913 Germany 7 5,072463768 France 6 4,347826087 Argentina 3 2,173913043 Spain 3 2,173913043 Brazil 2 1,449275362 Italy 2 1,449275362 Norway 2 1,449275362 Russia 2 1,449275362 Austria 1 0,724637681 Denmark 1 0,724637681 Ireland 1 0,724637681 Japan 1 0,724637681 Netherlands 1 0,724637681 New Zealand 1 0,724637681 Ukraine 1 0,724637681 TOTAL 138
- 39. In the pipeline
- 40. Projects • TOTAL Foundation: minigrants and cybertaxonomy • AFG • Barcoding • PMS • ABBED • ARCOD
- 41. Total minigrants: Inventory of the Southern Ocean biodiversity • A database of living Antarctic benthic Foraminifera (Protista) for SCAR-MarBIN RAMS (Prof. A.J. Gooday, National Oceanography Centre, Southampton, UK). (in progress). • Databasing Antarctica marine Bioconstructors: Adding Large Sessile Habitat-forming Animals to SCAR-MarBIN (Dr H. Griffiths, British Antarctic Survey, Cambridge. UK). (in progress). • SCAR-MarBIN database of Ostracoda Myocopida and Podocopida (Dr S. Brandao, Zoologisches Museum, Universitat Hamburg, Germany). (in prep.). • Cumacea (Crustacea: Peracarida) of the Southern Ocean (Dr U. Muhlenhardt-Siegel, Biozentrum Grindel und Zoologisches Museum, Universitat Hamburg, Germany). (done). • Synopsis of the Amphipoda Hyperiidea of the Southern Ocean, with distribution and ecological data (Dr W. Zeidler, South Australian Museum, Adelaide, Australia). (done). • Building a biogeographic baseline of obligate Antarctic benthic brooders: isopods for the Southern Ocean Mollusc database (SOMBASE) and SCAR-MarBIN (Dr S. Kaiser, Zoologisches Museum, Universitat Hamburg, Germany). (in progress).
- 42. Total minigrants: Inventory of the Southern Ocean biodiversity • Biogeographic distribution of the Antarctic and Sub-Antarctic brachiopods (living forms) (Dr C. Emig, Marseille, France). (in progress). • Systematics and distribution of echinoids collected during Australian cruises in East Antarctica (Dr T. Saucede, Universite de Bourgogne, Dijon, France). (in progress). • Biodiversity of Antarctic and Sub-Antarctic Crinoids (Dr M. Eleaume, Musee National d’Histoire Naturelle, Paris, France). (in prep.). • Biogeographic database of Antarctic and sub-Antarctic Polychaetes (Dr A. Glover, Natural History Museum, London, UK). (in prep.). • Contribution to the SCAR-MarBIN Molluscs database (Dr M. Schrodl, Zoologisches Staatsammlung Munchen, Germany). (in prep.). • Various general contributions to the SCAR-MarBIN RAMS and ANTOBIS (Henri Robert, Laboratory of Carcinology, Institut Royal des Sciences Naturelles de Belgique, BELGIUM.: Output: occurrence and taxonomic data (various groups), contributions to literature database, to expeditions database, to biogeographic synthesis).
- 49. ANTABIF • New project: Antarctic Biodiversity Information Facility • Funding: BELSPO (two years) • Objective: build (fast) a new portal giving access on all available information on Antarctic biodiversity • www.biodiversity.aq • Close collaboration with AAD/EBA/SCADM
- 50. Thanks!!
- 51. 2008 ToDos • see review