Demo Presentation ISMB/ECCB 2007
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The document discusses the Bio Aid project, which focuses on creating a virtual laboratory for e-science that employs knowledge extraction through customized or personalized experiments and reusable components. It highlights the AIDA toolbox designed for life sciences and food informatics, showcasing various workflows and applications, including text mining and evidence tracking. The project emphasizes collaboration and information sharing among researchers using web services and the semantic web.
![On line demo movies Demo movies online (hyperlinks) EZH2 demo (101Mb) [flash version] EZH2 highlights ( 81Mb) [flash version] 10/06/09 BioAID](https://image.slidesharecdn.com/demopresentationismbeccb2007-090604033413-phpapp01/85/Demo-Presentation-ISMB-ECCB-2007-29-320.jpg)
Demo Presentation ISMB/ECCB 2007
- 1. Bio AID Knowledge extraction for a Virtual Laboratory for e -Science Marco Roos , Scott Marshall , Sophia Katrenko, Edgar Meij, Willem van Hage, Pieter Adriaans ISMB/ECCB2007 – AIDA demonstration 10/06/09 BioAID AIDA = Adaptive Information Disclosure Application
- 3. Biomedical knowledge repository 10/06/09 BioAID PubMed statistics http://www.ncbi.nlm.nih.gov/entrez >17 million citations >400,000 added/year ~70,000 searches/month … Does not compute Does not fit
- 4. Text mining 10/06/09 BioAID Biology Customized or personalized experiment Extracted knowledge I want to do it my way, use my models Carole Goble’s me-scientist
- 5. Bioinformatics and e-science 10/06/09 BioAID Single purpose, black box application Customized experiments with reusable components My component Your component My component Your component My component
- 6. The AIDA toolbox for knowledge extraction and knowledge management in a Virtual Laboratory for e-Science
- 8. Components of the AIDA toolbox used for Life Science knowledge extraction
- 10. Bio AID ‘watskeburt’ workflow 10/06/09 BioAID AIDA AIDA OMIM service (Japan) AIDA ‘ Taverna shim’ Taverna ‘shim’
- 11. Bio AID ‘watskeburt’ running 10/06/09 BioAID
- 12. Bio AID ‘watskeburt’ results 10/06/09 BioAID
- 13. Proto-ontology (Protégé Jambalaya plugin) 10/06/09 BioAID
- 14. Enriched ontology (snapshot) 10/06/09 BioAID
- 15. Components of the AIDA toolbox used for Food Informatics
- 16. 10/06/09 BioAID
- 17. Food AID thesaurus workflow 10/06/09 BioAID
- 18. Food AID thesaurus workflow 10/06/09 BioAID
- 19. 10/06/09 BioAID For my research on crispiness of food products I need pictures of bread structure RMS
- 20. 10/06/09 BioAID
- 21. Food Resource Management System using AIDA services 10/06/09 BioAID
- 22. Food Resource Management System using AIDA services 10/06/09 BioAID
- 23. 10/06/09 BioAID
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- 26. Conclusions We have demonstrated an e-science approach to text mining: Application to knowledge extraction (EZH2) Application to rapid prototyping and synonym support (Food Informatics) Application that logs the trail to evidence (EZH2++) The use of web services and semantic web: Application by non-text miners Collaboration, information sharing 10/06/09 BioAID
- 27. Acknowledgements AIDA developers team: Sophia Katrenko, Edgar Meij, Willem van Hage, Frans Verster, Guus Schreiber, Maarten de Rijke, Pieter Adriaans Jan Top, Nicole Koenderink, Food informatics, Wageningen University Martijn Schuemie, Erasmus University Rotterdam myGrid team, especially Katy Wolstencroft, Stian Soiland, Stuart Owen, Andy Gibson, Alan Rector, Robert Stevens, Carole Goble W3C Semantic Web Health Care and Life Sciences Interest Group http:// adaptivedisclosure.org Work supported by VL-e and BioRange projects (BSIK grants) 10/06/09 BioAID
- 28. Further information and resources AID information and resources http:// adaptivedisclosure.org W3C Semantic Web Health Care and Life Sciences Interest Group http://www.w3.org/2001/sw/hcls/ 10/06/09 BioAID Workflows available from myExperiment.org going online August 2007
- 29. On line demo movies Demo movies online (hyperlinks) EZH2 demo (101Mb) [flash version] EZH2 highlights ( 81Mb) [flash version] 10/06/09 BioAID
- 30. End of presentation... 10/06/09 BioAID
Editor's Notes
- #2: E-science presentation Manchester September 25 2006 06/10/09 We will demonstrate a biological application of the ‘Adaptive Information Disclosure Application’ toolbox, a toolbox that is of general purpose, but can be used for specific applications, such as life science.