DNA is not Destiny
Epigentics
Dennis Lloyd
Shubhda Roy
DNA is not Destiny
Agenda
– Overview of Epigenetics
– Environment
– Agouti Mice
– MethDataBase
– Walkthrough
DNA is not Destiny
Overview- Epigenetic inheritance
• Darwinian Gene Centric - evolutionary theory is limited in scope.
• Someone said “The genetic blueprint, is like a complex musical
score, remains lifeless without an orchestra of cells (players) and
epigenotypes (instruments) to express it. “
• Epigentics causes change in gene function or phenotype change
without changing the actual DNA i.e genotype.
• Historical –theory held that – each undifferentiated cell undergoes
crisis which determines its fate. This was not inherited through
genes, and was called Epigenetic.
DNA is not Destiny
• Hundred of cell in human body – all start out from the same point
• Liver and cells contain same DNA, but functionality is different
• This information is stored in array of chemical markers called
epigenome
• Epigenome decide the fate of a cell by switching a gene on and off
• Epigenome is the state of a cell
DNA is not Destiny
Environment prompts epigenetic change
• Epigentic can be caused by environment, toxins,
diet
– Plants have seasonal changes
• flowering genes silenced in cold weather
– Mother mouse licking the baby mice
– Epigentic change can effect future generation
• Agricultural fungicide - affected pregnant mother rats
-brought down sperm count of male rats – for next four
generation
DNA is not Destiny
Diet of inbred mice affected future generation
– Yellow fat mice known as
‘agouti mice’
– Agouti gene makes rodents
yellow, ravenous and prone to
cancer and diabetes
– Fur of baby mice varies on
methylation of agouti gene
during embryonic growth
– Pregnant mother fed a diet
rich in methyl donors(folic
acid, vitamin B12 ), small
chemical clusters attach to a
gene and turn it off.
– Baby mice brown, and lived a
long life unlike parents
DNA is not Destiny
Overview- Epigenetic inheritance
Epigentic factor can happen in two ways:-
DNA methylation
• Information is stored as (CH3) or methly
group tagged on a nucleotide base
• addition of methyl group to a particularbase
–interferes with chemical signaling
• Lackof (CH3) alters chromtin arrangement
leading to gene silencing after cells divide
• Too much hinders function of DNA repair
gene like tumorsuppressors, leading to
cancers
DNA is not Destiny
Changing spatial patternsof DNA/Histone Code
altered
• DNA wrapped around histones
• Need to unwound to be
transcribed
• physically blocking, giving
access to gene affects the
chemical signaling
DNA is not Destiny
• jo
MethDatabase
DNA is not Destiny
DNA is not Destiny
DNA is not Destiny
DNA is not Destiny
Alignment of Sequences Showing Potential and
Actual Methylation Sites
DNA is not Destiny
Density Distribution of 52 Aligned
Sequences
DNA is not Destiny
Thanks

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Epigenetics[1]

  • 1. DNA is not Destiny Epigentics Dennis Lloyd Shubhda Roy
  • 2. DNA is not Destiny Agenda – Overview of Epigenetics – Environment – Agouti Mice – MethDataBase – Walkthrough
  • 3. DNA is not Destiny Overview- Epigenetic inheritance • Darwinian Gene Centric - evolutionary theory is limited in scope. • Someone said “The genetic blueprint, is like a complex musical score, remains lifeless without an orchestra of cells (players) and epigenotypes (instruments) to express it. “ • Epigentics causes change in gene function or phenotype change without changing the actual DNA i.e genotype. • Historical –theory held that – each undifferentiated cell undergoes crisis which determines its fate. This was not inherited through genes, and was called Epigenetic.
  • 4. DNA is not Destiny • Hundred of cell in human body – all start out from the same point • Liver and cells contain same DNA, but functionality is different • This information is stored in array of chemical markers called epigenome • Epigenome decide the fate of a cell by switching a gene on and off • Epigenome is the state of a cell
  • 5. DNA is not Destiny Environment prompts epigenetic change • Epigentic can be caused by environment, toxins, diet – Plants have seasonal changes • flowering genes silenced in cold weather – Mother mouse licking the baby mice – Epigentic change can effect future generation • Agricultural fungicide - affected pregnant mother rats -brought down sperm count of male rats – for next four generation
  • 6. DNA is not Destiny Diet of inbred mice affected future generation – Yellow fat mice known as ‘agouti mice’ – Agouti gene makes rodents yellow, ravenous and prone to cancer and diabetes – Fur of baby mice varies on methylation of agouti gene during embryonic growth – Pregnant mother fed a diet rich in methyl donors(folic acid, vitamin B12 ), small chemical clusters attach to a gene and turn it off. – Baby mice brown, and lived a long life unlike parents
  • 7. DNA is not Destiny Overview- Epigenetic inheritance Epigentic factor can happen in two ways:- DNA methylation • Information is stored as (CH3) or methly group tagged on a nucleotide base • addition of methyl group to a particularbase –interferes with chemical signaling • Lackof (CH3) alters chromtin arrangement leading to gene silencing after cells divide • Too much hinders function of DNA repair gene like tumorsuppressors, leading to cancers
  • 8. DNA is not Destiny Changing spatial patternsof DNA/Histone Code altered • DNA wrapped around histones • Need to unwound to be transcribed • physically blocking, giving access to gene affects the chemical signaling
  • 9. DNA is not Destiny • jo MethDatabase
  • 10. DNA is not Destiny
  • 11. DNA is not Destiny
  • 12. DNA is not Destiny
  • 13. DNA is not Destiny Alignment of Sequences Showing Potential and Actual Methylation Sites
  • 14. DNA is not Destiny Density Distribution of 52 Aligned Sequences
  • 15. DNA is not Destiny Thanks