Faga C Map Bosc2008
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CMap is a web-based comparative map viewer developed for the Gramene project that can display comparisons of sequence, physical, genetic, and other data. It is data type agnostic and can display synteny data as well as comparisons between sequence assemblies and fingerprinted contigs maps. CMap is freely available under open source licenses and was originally developed as part of the GMOD project.
Faga C Map Bosc2008
- 1. CMap BOSC 2008 Ben Faga
- 2. What is CMap? CMap is a web-based, comparative map viewer Data provided by the Gramene project (www.gramene.org)
- 3. About CMap CMap is a component of the GMOD project which was originally developed for Gramene CMap is data type agnostic and can display comparisons of sequence, physical, genetic, etc data with each other. CMap can use with most database management systems CMap is freely available, under the GPL or the Artistic Licence 2.0.
- 4. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)
- 5. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)
- 6. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)
- 7. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)
- 8. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)
- 9. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)
- 10. CMap Dotplot Data provided by the Gramene project (www.gramene.org)
- 11. Acknowledgments Doreen Ware and the Ware Lab Lincoln Stein and the Stein Lab Gramene (www.gramene.org) GMOD (www.gmod.org) Ken Clark (original author of CMap) www.gmod.org/CMap