Demystifying Flow Cytometry


         Presented by
     Dr D Sumanth Kumar

         Moderators
      Prof Dr Kumuda
     Dr Devendar Reddy
Basic Principle

    Measuring and analyzing physical &/
    chemical characteristics of particles (cells)
    as they flow through a beam of light
    ( Laser)

    0.2 to 150 μm

    Sample: Blood/Bone marrow; Anti-
    coagulated di-Na EDTA/ Na citrate/ Heparin

    Solid Tissue; RPMI (Roswell Park Memorial
    Institute) medium & minced
Flow Cytometer

    The Flow System

    The Optical System

    Electronic System
Flowcytometry
Flowcytometry
Flowcytometry
Flow Cytometer: Flow System

    Stream of Sheath fluid (0.9% Saline / PBS)

    Hydrodynamic focusing

    Sample pressure Vs Sheath fluid pressure
Flowcytometry
Flowcytometry
Flow Cytometer:The Optical System

    Laser illumination (M/C Argon Laser 488nm)

    Optical mirrors and filters : direct scattered
    light and fluorescent light to appropriate
    photo detectors

    Light scatter: 1) Forward light scatter;
    surface area 2)Side scatter; cytoplasmic
    granularity & nuclear complexity

    Light scatter example Lymphocytes vs
    Neutrophils                    ..Continued
Flowcytometry
Flowcytometry
Flowcytometry
Flow Cytometer:The Optical System

….

    Flourescence:Monoclonal antibody;
    Principal; direct & indirect staining

    Fluorescent dyes/ Antibodies conjugated
    with Fluorochromes

    FITC (Flouroscene iso-thio-cyanate); green;
    510-560 nm ( ~525 nm)

    PE (Phyco-erythrin); red; ~570 nm
Flowcytometry
Flowcytometry
Flow Cytometer: Electronic system

    Photodetectors & ADC ( Analog to digital
    converter)

    PMT ( Photomultiplyer tubes)

    Photodiode

    Log amplyfier & Linear amplyfier

    ADC: Organize signals to form data plots
    (histograms, dot plots, 3D histograms)
                           ….continued
Flowcytometry
Flowcytometry
Flowcytometry
Flowcytometry
Flowcytometry
Flow Cytometer: Electronic system

…..

    Setting up a Threshould

    Gating
USES

    Cell Markers: Monoclonal antibody
    technology; CD markers

    DNA content: Laser with significant UV
    output and florescent DNA stains
1) Propidium iodide 2)HOECHEST 33342/
  DAPI ( di-amidino phenyl-indole) ; adinosine
  / thiamine 3)Mithramicyin & chromomycin
  A3; guanine/ cytosine
                            ….continued
USES
   Cell Cycle Analysis:
Flowcytometry
Disadvantages

    Low Cell Throughput Rate

    Requirement of Highly Trained Operators

    Expensive( $100,000 to $250,000 )
Flowcytometry

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Flowcytometry

  • 1. Demystifying Flow Cytometry Presented by Dr D Sumanth Kumar Moderators Prof Dr Kumuda Dr Devendar Reddy
  • 2. Basic Principle  Measuring and analyzing physical &/ chemical characteristics of particles (cells) as they flow through a beam of light ( Laser)  0.2 to 150 μm  Sample: Blood/Bone marrow; Anti- coagulated di-Na EDTA/ Na citrate/ Heparin  Solid Tissue; RPMI (Roswell Park Memorial Institute) medium & minced
  • 3. Flow Cytometer  The Flow System  The Optical System  Electronic System
  • 7. Flow Cytometer: Flow System  Stream of Sheath fluid (0.9% Saline / PBS)  Hydrodynamic focusing  Sample pressure Vs Sheath fluid pressure
  • 10. Flow Cytometer:The Optical System  Laser illumination (M/C Argon Laser 488nm)  Optical mirrors and filters : direct scattered light and fluorescent light to appropriate photo detectors  Light scatter: 1) Forward light scatter; surface area 2)Side scatter; cytoplasmic granularity & nuclear complexity  Light scatter example Lymphocytes vs Neutrophils ..Continued
  • 14. Flow Cytometer:The Optical System ….  Flourescence:Monoclonal antibody; Principal; direct & indirect staining  Fluorescent dyes/ Antibodies conjugated with Fluorochromes  FITC (Flouroscene iso-thio-cyanate); green; 510-560 nm ( ~525 nm)  PE (Phyco-erythrin); red; ~570 nm
  • 17. Flow Cytometer: Electronic system  Photodetectors & ADC ( Analog to digital converter)  PMT ( Photomultiplyer tubes)  Photodiode  Log amplyfier & Linear amplyfier  ADC: Organize signals to form data plots (histograms, dot plots, 3D histograms) ….continued
  • 23. Flow Cytometer: Electronic system …..  Setting up a Threshould  Gating
  • 24. USES  Cell Markers: Monoclonal antibody technology; CD markers  DNA content: Laser with significant UV output and florescent DNA stains 1) Propidium iodide 2)HOECHEST 33342/ DAPI ( di-amidino phenyl-indole) ; adinosine / thiamine 3)Mithramicyin & chromomycin A3; guanine/ cytosine ….continued
  • 25. USES  Cell Cycle Analysis:
  • 27. Disadvantages  Low Cell Throughput Rate  Requirement of Highly Trained Operators  Expensive( $100,000 to $250,000 )