The Future Publication of Software
1 like819 views
The document discusses the presentation made by Martin Hammitzsch at the European Geosciences Union General Assembly 2015, focusing on scientific software and its future publication. Key topics include software reproducibility, versioning, documentations, and the integration of software in research practices. It emphasizes the need for proper archiving, tracking, and accessibility of scientific software to enhance visibility and recognition in the geoscience community.
The Future Publication of Software
- 1. European Geosciences Union General Assembly 2015 Vienna | Austria | 12 – 17 April 2015 SC24 Open Science goes Geo – Part II: Scientific Software Martin Hammitzsch, Helmholtz Centre Potsdam, GFZ German Research Centre for Geosciences Future Publication of Software or the GitHub of Science sciforge
- 2. Challenges EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge review reproducibility software-specific versioning measuring productivity subject-specific archiving executables competencies traceability interdisciplinarity ecosystem documentation impact reputation reusability quality sourcecode metrics recognition ... skills value identifiers
- 3. ★ Software journals using individual policies for software related papers; ★ Digital Repositories minting DOIs for source code copies and software release packages; ★ Foundations and companies providing environment for FOSS projects; ★ Institutes offering software/code repositories and digital repositories for research results. State of the Art EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 4. Software Descriptor / Paper EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 5. Software Descriptor / Paper Source Code refers / links to EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 6. Software Descriptor / Paper Source Code refers / links to stored/livesin Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 7. Software Descriptor / Paper Source Code refers / links to stored/livesin refers / links to research data Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 8. Software Descriptor / Paper Source Code refers / links to stored/livesin research data or / and ? refers / links to Data Descriptor / Paper Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 9. Software Descriptor / Paper Source Code refers / links to stored/livesin research data or / and ? refers / links to Data Descriptor / Paper refers / links to Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 10. Software Descriptor / Paper Source Code refers / links to stored/livesin research data or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 11. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 12. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 13. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review digital repository Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 14. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review DOI digital repository Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 15. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review DOI digital repository digital repository DOI Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 16. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review DOI digital repository digital repository DOI digital repository DOI Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 17. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review DOI digital repository digital repository DOI digital repository DOI DOI Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 18. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Review DOI digital repository digital repository DOI digital repository Review DOI digital repository DOI DOI Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 19. Software Descriptor / Paper Source Code refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 20. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 21. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to packed in Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 22. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to packed in complements Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 23. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? complements refers / links to packed in complements Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 24. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements refers / links to packed in complements Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 25. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements refers / links to packed in complements complements Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 26. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements refers / links to packed in complements - user guide - installation guide - developer guide complements Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 27. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to packed in complements / API doc complements - user guide - installation guide - developer guide Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 28. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to packed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 29. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 30. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 31. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository Review EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 32. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository Review EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 33. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository Review Git-based→ Git != GitHub * EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 34. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository Review Git-based→ Git != GitHub * EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge * Git - distributed revision control system with an emphasis on data integrity, and support for distributed, non-linear workflows; GitHub - web-based Git repository hosting service, which offers all of the distributed revision control and source code management functionality of Git as well as adding its own features ... it provides access control and collaboration features such as wikis, task management, and bug tracking and feature requests. -- wikipedia
- 35. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 36. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + features
- 37. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + features+ DOI system interop
- 38. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + DOI system interop + features DOI
- 39. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review DOI EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + DOI system interop + featuresScientist’s Workplace fork, clone
- 40. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review DOI EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + DOI system interop + featuresScientist’s Workplace push, pull, submitfork, clone
- 41. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review DOI EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + DOI system interop + featuresScientist’s Workplace Archive fork, push, pull, submitfork, clone clone
- 42. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review DOI EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + DOI system interop + features = GitHub of Science?Scientist’s Workplace Archive fork, push, pull, submitfork, clone clone
- 43. Software Descriptor / Paper Source Code Software Release for Publication refers / links to stored/livesin research data metadata accompanied by or / and ? refers / links to test data Data Descriptor / Paper or / and ? refers / links to complements complements refers / links to complements packed in managed in binaries com plem entscomplements / API doc complements - user guide - installation guide - developer guide Software / Code Repository + landingpage Review DOI EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge + DOI system interop + features = GitHub of Science? = Concept, Platform, Implementation by journals? Scientist’s Workplace Archive fork, push, pull, submitfork, clone clone
- 44. Approach EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge
- 45. Approach EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge established publishing processes proven softwareengineering practices
- 46. Approach EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge Merge, Test, and Evaluate established publishing processes proven softwareengineering practices
- 47. Approach EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch sciforge Merge, Test, and Evaluate established publishing processes proven softwareengineering practices skills policies infrastructures and platforms