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General ausplots school
Environmental Monitoring
Ben Sparrow
Ausplots Director
TERN
The University of Adelaide
What will we cover today?
Types of environmental monitoring.
Details of each type.
Ausplots as an example.
Two practical exercise to experience some of
these issues.
Environmental monitoring
Survey/ Field Trip/ Excursion is about working
out what is there
Monitoring is about going to the same place
again and again to see how it has changed
Seasonal and long term change
Environmental change
General ausplots school
Step 1. – Using Lego construct a
healthy environment
General ausplots school
General ausplots school
Why is it a health environment?
Mitch (5)
No Dead Trees
A house for Mr Frog under the leaves
A house for Mr Bat
Shade for Mr Scorpion
Good because there are lots of trees and
plants
General ausplots school
Why is it a Healthy Environment?
Jake (7)
No Dead Trees
Lots of trees
Lots of animals (frog, scorpion, snake,
crocodile, bat)
Lots of flowers
Weeds under rock
Trees with roots showing
Safe places for animals to live.
After Eyre et. al. 2011
Population Ecology
Community
Ecology
Biogeography/
Landscape Ecology
Monitoring
Which is better?
They are all important!
The most important parts are
actually the arrows!
Need to use them together
Radiographer
Surgeon
Registrar
GP
Theatre Nurse
Anestesiologist
Nurse
Administrator
Radiologist
Surveillance Monitoring – What and where is it changing?
Landscape monitoring – When and Where is it changing?
Targeted Monitoring - Why is it changing?
Discuss measures
AusPlots
Designing a surveillance monitoring
network for Australia.
NOT
Because we want to know if there is a problem, but
we don’t have the resources to have the fire
department everywhere all the time!
Surveillance Monitoring
- ecological research infrastructure (the core environmental
information that everyone uses – Like road infrastructure)
– Make new and old information available for everyone,
from backyards to global
– Collect new data in important areas and where we don’t
know much.
In the context of AusPlots the Plots and their associated data are
considered to be infrastructure.
TERN
Objectives of AusPlots
National network of surveillance and ecosystem baseline assessment sites
Measuring soil and vegetation the same way everywhere and
Putting them in sensible places and
Collect plots
by
Analyzing the data (What change is happening) and making samples available
to researchers and
Making data available
To
Work out what change is happening where (and how much)
About Our Method
• Has to be practical – easy to use
• “It’s not about developing the perfect method, but rather
understanding how imperfect the method is.”
Modular Methods
• Pick which bits are collected where
• Mostly we collect everything
S1
NEN5N4N3N2N1NW
W5
W4
W3
W2
W1
SW S2 S3 S4 S5 SE
E1
E2
E3
E4
E5
What do we collect?
Voucher Specimens
for official Identification and future use.
Vouchers for genetic and isotope analysis
1. Take around 10 cm2 from
each voucher specimen
2. Place into a synthetic
tea bag and seal
3. Label with adhesive voucher
label and scan with app
4. Place bag in box with ⅓ cup
silica granules (self indicating
and non-indicating granules)
5. Seal box and ensure it is
labelled with plot identifier.
Preferably 1 box per plot.
Change silica every few days
until indicator no longer
changes colour.
6. Samples can then be
used for isotope and
DNA analyses
+ Duplicates for
Dominant
species
Point Intercept Data
General ausplots school
Basal Wedge
During
After
Leaf Area Index
Soil Metagenomic Samples
9 Samples across the
site
Top 3cm of soil and
crust
Dried and stored
Soil Pit
9 x 30cm
Subsites to
sample
variability
Store samples in
bags and
prepare for NSA
on return from
the field
Bulk density
• How much does
the dirt weigh?
2.5m
1.45m
The tripod is set up at
each apex of the triangle
and a full set of photos
taken for 360 degrees at
each point.
The centre point is a star
dropper standing 1.3m
tall (if at all possible) with
a mark ( the top of the
mark) set 25cm from the
top of the pole.
Photopoints
Ellude to what analysis avalible
Full method details available at:
http://www.ausplots.org/useourinfrastructure/
Under the heading of Accepted Method.
AusPlots
Stage 1. Where to go in
Australia?
Stage 2. Which ones to do
first?
Stage 3. What do we already
know?
Stage 4. Does it seem a good
site when we get there?
Where? - Stratification
Addresses
knowledge gaps
Located where
there is a NEED for
data
General ausplots school
Have also made methods on :
Tall Eucalypts
Condition / Health
Woodlands
Animals,
With ongoing work on:
Fungi (mushrooms)
Ants and Bugs
A Quicker method
What to do when we go back to a site
General ausplots school
General ausplots school
How is it achieved?
Extensive Networking / Collaboration / input to the process
Engage with Agricultural, Environmental, Forestry communities as well as NGO’s –
Input from all Rangeland States and Territories
The challenges of this kind of project are greater socially than they are scientifically!
SA SA
National
NationalNational
Collaborator
TAS QLD
NSW
NSW
NSWNT
WA
WA NSW
National
TERN
TERN
TERN TERN
QLD
One method agreed upon and used across
the country
http://www.ausplots.org/
Designed to be used with our training
course
New modules being added – Check back
regularly.
Field App: Plot Creation
46
Field App: Site Description
47
Field App: Veg. Vouchering
48
Field App: Point Intercept
49
Field App: Basal Wedge
50
Field App: Structural Summary
51
Field App: Plot Upload
52
Data Delivery System
Field Collection
Curation
Database
Storage
Retrieval
Data Delivery: Soils to Satellites
http://soils2sat.ala.org.au/ala-soils2sat/login/auth
Data Delivery: Aekos
http://www.aekos.org.au/
General ausplots school
Field team
• Based in Adelaide
• Provides consistency
• Best way to use
scarce resources –
Would prefer to have
state based teams in
the future if funding
allowed.
• Well equipped
• Can train others
• Work in conjunction
with state agencies
where possible.
• Work well together in
trying conditions.
Training
courses
• At least one per
year
• A day of lectures
explaining all
aspects of the
method
• A day learning
each component
of our method
(Vegetation,
Soils and
Technical
Aspects)
• Focuses on
theoretical and
practical aspects
• Pragmatic
• Held in the
Rangelands
General ausplots school
• Presentations
to community
groups.
• Workshops
• Targeted
presentations
(state agencies,
fed Govt.)
• Briefing
ministerial
advisors
• Well maintained website
• Conference presentations
• International reference groups /
tours
• Regular TERN Newsletter articles
to large mailing list.
How to get samples
At Present have collected approximately:
>10,000 Soil samples
~2700 Soil metagenomic Samples
>15000 Voucher specimens
~ 15000 Genetic Samples
~ 16000 Dominant Genetic replicates
All of which can be access following standard protocols
Information pack available for download at our website
Details how to get access.
What can AusPlots offer you?
www.ausplots.org.au
For details including Volunteering, HDR, Data, methods,
Samples, Training, App etc.
Ben.sparrow@adelaide.edu.au
08 8313 1201
General ausplots school

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General ausplots school

  • 2. Environmental Monitoring Ben Sparrow Ausplots Director TERN The University of Adelaide
  • 3. What will we cover today? Types of environmental monitoring. Details of each type. Ausplots as an example. Two practical exercise to experience some of these issues.
  • 4. Environmental monitoring Survey/ Field Trip/ Excursion is about working out what is there Monitoring is about going to the same place again and again to see how it has changed Seasonal and long term change Environmental change
  • 6. Step 1. – Using Lego construct a healthy environment
  • 9. Why is it a health environment? Mitch (5) No Dead Trees A house for Mr Frog under the leaves A house for Mr Bat Shade for Mr Scorpion Good because there are lots of trees and plants
  • 11. Why is it a Healthy Environment? Jake (7) No Dead Trees Lots of trees Lots of animals (frog, scorpion, snake, crocodile, bat) Lots of flowers Weeds under rock Trees with roots showing Safe places for animals to live.
  • 12. After Eyre et. al. 2011 Population Ecology Community Ecology Biogeography/ Landscape Ecology
  • 14. Which is better? They are all important! The most important parts are actually the arrows! Need to use them together
  • 16. Surveillance Monitoring – What and where is it changing? Landscape monitoring – When and Where is it changing? Targeted Monitoring - Why is it changing?
  • 18. AusPlots Designing a surveillance monitoring network for Australia.
  • 19. NOT Because we want to know if there is a problem, but we don’t have the resources to have the fire department everywhere all the time! Surveillance Monitoring
  • 20. - ecological research infrastructure (the core environmental information that everyone uses – Like road infrastructure) – Make new and old information available for everyone, from backyards to global – Collect new data in important areas and where we don’t know much. In the context of AusPlots the Plots and their associated data are considered to be infrastructure. TERN
  • 21. Objectives of AusPlots National network of surveillance and ecosystem baseline assessment sites Measuring soil and vegetation the same way everywhere and Putting them in sensible places and Collect plots by Analyzing the data (What change is happening) and making samples available to researchers and Making data available To Work out what change is happening where (and how much)
  • 22. About Our Method • Has to be practical – easy to use • “It’s not about developing the perfect method, but rather understanding how imperfect the method is.” Modular Methods • Pick which bits are collected where • Mostly we collect everything
  • 23. S1 NEN5N4N3N2N1NW W5 W4 W3 W2 W1 SW S2 S3 S4 S5 SE E1 E2 E3 E4 E5 What do we collect?
  • 24. Voucher Specimens for official Identification and future use.
  • 25. Vouchers for genetic and isotope analysis 1. Take around 10 cm2 from each voucher specimen 2. Place into a synthetic tea bag and seal 3. Label with adhesive voucher label and scan with app 4. Place bag in box with ⅓ cup silica granules (self indicating and non-indicating granules) 5. Seal box and ensure it is labelled with plot identifier. Preferably 1 box per plot. Change silica every few days until indicator no longer changes colour. 6. Samples can then be used for isotope and DNA analyses + Duplicates for Dominant species
  • 30. Soil Metagenomic Samples 9 Samples across the site Top 3cm of soil and crust Dried and stored
  • 32. 9 x 30cm Subsites to sample variability Store samples in bags and prepare for NSA on return from the field
  • 33. Bulk density • How much does the dirt weigh?
  • 34. 2.5m 1.45m The tripod is set up at each apex of the triangle and a full set of photos taken for 360 degrees at each point. The centre point is a star dropper standing 1.3m tall (if at all possible) with a mark ( the top of the mark) set 25cm from the top of the pole. Photopoints
  • 35. Ellude to what analysis avalible
  • 36. Full method details available at: http://www.ausplots.org/useourinfrastructure/ Under the heading of Accepted Method.
  • 38. Stage 1. Where to go in Australia? Stage 2. Which ones to do first? Stage 3. What do we already know? Stage 4. Does it seem a good site when we get there? Where? - Stratification
  • 41. Have also made methods on : Tall Eucalypts Condition / Health Woodlands Animals, With ongoing work on: Fungi (mushrooms) Ants and Bugs A Quicker method What to do when we go back to a site
  • 44. How is it achieved? Extensive Networking / Collaboration / input to the process Engage with Agricultural, Environmental, Forestry communities as well as NGO’s – Input from all Rangeland States and Territories The challenges of this kind of project are greater socially than they are scientifically! SA SA National NationalNational Collaborator TAS QLD NSW NSW NSWNT WA WA NSW National TERN TERN TERN TERN QLD
  • 45. One method agreed upon and used across the country http://www.ausplots.org/ Designed to be used with our training course New modules being added – Check back regularly.
  • 46. Field App: Plot Creation 46
  • 47. Field App: Site Description 47
  • 48. Field App: Veg. Vouchering 48
  • 49. Field App: Point Intercept 49
  • 50. Field App: Basal Wedge 50
  • 51. Field App: Structural Summary 51
  • 52. Field App: Plot Upload 52
  • 53. Data Delivery System Field Collection Curation Database Storage Retrieval
  • 54. Data Delivery: Soils to Satellites http://soils2sat.ala.org.au/ala-soils2sat/login/auth
  • 57. Field team • Based in Adelaide • Provides consistency • Best way to use scarce resources – Would prefer to have state based teams in the future if funding allowed. • Well equipped • Can train others • Work in conjunction with state agencies where possible. • Work well together in trying conditions.
  • 58. Training courses • At least one per year • A day of lectures explaining all aspects of the method • A day learning each component of our method (Vegetation, Soils and Technical Aspects) • Focuses on theoretical and practical aspects • Pragmatic • Held in the Rangelands
  • 60. • Presentations to community groups. • Workshops • Targeted presentations (state agencies, fed Govt.) • Briefing ministerial advisors • Well maintained website • Conference presentations • International reference groups / tours • Regular TERN Newsletter articles to large mailing list.
  • 61. How to get samples At Present have collected approximately: >10,000 Soil samples ~2700 Soil metagenomic Samples >15000 Voucher specimens ~ 15000 Genetic Samples ~ 16000 Dominant Genetic replicates All of which can be access following standard protocols Information pack available for download at our website Details how to get access.
  • 62. What can AusPlots offer you? www.ausplots.org.au For details including Volunteering, HDR, Data, methods, Samples, Training, App etc. Ben.sparrow@adelaide.edu.au 08 8313 1201