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The Earth Science Platform
Conventions

Tools
Formats

Services

1
Python and HDF
From the Introduction:
As a graduate student I didn’t care
that much about the details of how
my data were stored… As a
scientist, I eventually came to
recognize that the choices we make
for organizing and storing our data
are also choices about
communication. Not only do
standard, well-designed formats
make life easier for individuals, but
they make it possible to share data
with a global audience.

2
Python and HDF and Science

3
Python and HDF and Science have #HDFInside

4
Formats with HDF Inside

HDF5

5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
Formats with HDF Inside

HDF5
HDF5

14
Community

15
Community

Using HDF to share data?
Tweet #HDFInside

16

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Hdf Inside

Editor's Notes

  • #3: New book on Pythin and HDF by Andrew Collette. The quote from the Introduction indicates that Andrew understands the important role of standard formats in data sharing.
  • #4: Andrew works at the Colorado Center for Lunar Dust and Atmospheric Studies (http://lasp.colorado.edu/home/ccldas/). This large NASA facility is used by scientists in NASA and around the world to study very high speed dust impacts on instrument windows and other objects. Scientists take their observations home in HDF5 files.
  • #5: The Colorado Center for Lunar Dust and Atmospheric Studies (http://lasp.colorado.edu/home/ccldas/) has HDFIndise.
  • #6: The NASA Earth Observing System Data and Information System (https://earthdata.nasa.gov) has #HDFInside.
  • #7: netCDF4 (http://www.unidata.ucar.edu/software/netcdf/) has #HDFInside
  • #8: The Bathymetry Attributed Grid (BAG) developed by the Open Navigational Surface (http://www.opennavsurf.org) and used by the National Ocean Service (http://www.ngdc.noaa.gov/mgg/bathymetry/hydro.html) has #HDFInside
  • #9: The NeXus Scientific Format has #HDFInside http://www.nexusformat.org
  • #10: HDF5-FastQuery developed by the Visualization Groupat Lawrence Berkely National Lab (http://www-vis.lbl.gov/Events/SC05/HDF5FastQuery/) has #HDFInside
  • #11: h5py (http://www.h5py.org) developed at the Colorado Center for Lunar Dust and Atmospheric Studies (http://lasp.colorado.edu/home/ccldas/) and PyTables (http://www.pytables.org/moin) have #HDFInside.
  • #12: GLOBE Claritas (http://www.globeclaritas.com) seismic data processing software and h5vc software for scalable nucleotide tallies (http://www.bioconductor.org/packages/2.14/bioc/html/h5vc.html) have #HDFInside.
  • #13: The KAIRA (Kilpisjärvi Atmospheric Imaging Receiver Array) dual array of omni-directional VHF radio antennas,a project of the Sodankylä Geophysical Observatory and the Low Frequency Array (LOFAR http://www.lofar.org) have #HDFInside.
  • #14: MathWorks (MATLAB, http://www.mathworks.com ) and Exelis (IDL, ENVI, http://www.exelisinc.com/Pages/default.aspx) have #HDFInside.
  • #15: The NASA Earth Observing System Data and Information System (https://earthdata.nasa.gov) has #HDFInside.netCDF4 (http://www.unidata.ucar.edu/software/netcdf/) has #HDFInsideThe Bathymetry Attributed Grid (BAG) developed by the Open Navigational Surface (http://www.opennavsurf.org) and used by the National Ocean Service (http://www.ngdc.noaa.gov/mgg/bathymetry/hydro.html) has #HDFInsideThe NeXus Scientific Format has #HDFInside http://www.nexusformat.orgHDF5-FastQuery developed by the Visualization Groupat Lawrence Berkely National Lab (http://www-vis.lbl.gov/Events/SC05/HDF5FastQuery/) has #HDFInsideh5py (http://www.h5py.org) developed at the Colorado Center for Lunar Dust and Atmospheric Studies (http://lasp.colorado.edu/home/ccldas/) and PyTables (http://www.pytables.org/moin) have #HDFInside.GLOBE Claritas (http://www.globeclaritas.com) seismic data processing software and h5vc software for scalable nucleotide tallies (http://www.bioconductor.org/packages/2.14/bioc/html/h5vc.html) have #HDFInside.The KAIRA (Kilpisjärvi Atmospheric Imaging Receiver Array) dual array of omni-directional VHF radio antennas,a project of the Sodankylä Geophysical Observatory and the Low Frequency Array (LOFAR http://www.lofar.org) have #HDFInside.MathWorks (MATLAB, http://www.mathworks.com ) and Exelis (IDL, ENVI, http://www.exelisinc.com/Pages/default.aspx) have #HDFInside.