Engineer “Arg-Gly-Asp” (RGD)
epitopes for multi-valent display
RGD:
       stem-cell
  adhesion epitope
  also target cancer
cells that up-regulate
        integrin
                  TYMV with RGD substitution at residue 44
pH-dependent enhanced stability
Mutate internal scaffold N-terminus of TYMV CP




                                                   Wild-type 70°C




                                                 N-term mutant 70°C
Robust TYMV virus-
like particles in E. coli

 In vitro reassembly
  from a denatured
         state
After many months
 crystal structure
data for TYMV and
     mutants!
TYMV can form a molecular “container” after
release of RNA, nano-inspired applications with
a protein shell with a small “hole”




      before




  After freeze-thaw
A CP cleavage product formed during RNA ejection
                hindered in one of our “super-stable” virion mutants

&! SDS-PAGE: Coomassie stain                                    ( ! Wt Mass Spec after freeze-
 26

 17         % RNA release
             !                                                  C thaw: intact particle
 !
"# $!       !!ATC Virion ATC               Virion                                              / 01! / 23!
                        Wt          Ky
  &! SDS-PAGE: Coomassie stain                      (!                                ) *&) !!!*+, !!!&*, - , . , +!
   Western blot
' ! 26                                  1 min.
                                                                                             / 01!

              %!                        exposure




                                                                Intensity
    17
    !
   "#$!       !!ATC      Virion   ATC%Virion
                                      !                                               / 01! / 23!
                        Wt          Ky min.
                                     10
                                        exposure                             ) *&) !!!*+, !!!&*, - , . , +!
                                                                                / 23!

    !
         Western blot
  'pH 11.5     pH 4 pH11.5 pH 1 min.
                              4
                                     %!                                             / 01!
                                    exposure
                                                    Intensity




             Ky              Wt    % min.
                                    !                                                          +132
                                                                                                                          +132

                                   10
# !Coomassie SDS-PAGE               exposure                                / 23!
                                                                                       +132



    pH 11.5 pH 4 pH11.5 pH 4
                            %!
           13
              % !
     12 Ky 14Wt 15 16                                                                                 Mass (Da)   +132
                                                                                      +132
                                                                              Fourier Transform-Ion Cyclotron Resonance
       Wt CsCl gradient fractions
      Coomassie SDS-PAGE
  #!                                                                          +132
                                                                              (FTICR) Mass spectrometry
TYMV dual-subgenomic RNA for
expression of GFP and GUS.
Future downstream use for
vaccine development
Biophysical studies of TYMV
Characterization empty, virion and intermediate particles
   Northerns, Westerns, gradient centrifugation, etc.
Previous Work (M.S degree at OHSU):
Signaling of a Cytomegalovirus chemokine
receptor US28: plenty of cloning, tissue
culture, immuno-precipitation/fluorescence
and construction of CMV knockout mutants
       US28
               chemokine
Recent TYMV article
& (cover image) Jan 2011,
more publications to come

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Linked In March24v5

  • 1. Engineer “Arg-Gly-Asp” (RGD) epitopes for multi-valent display
  • 2. RGD: stem-cell adhesion epitope also target cancer cells that up-regulate integrin TYMV with RGD substitution at residue 44
  • 3. pH-dependent enhanced stability Mutate internal scaffold N-terminus of TYMV CP Wild-type 70°C N-term mutant 70°C
  • 4. Robust TYMV virus- like particles in E. coli In vitro reassembly from a denatured state
  • 5. After many months crystal structure data for TYMV and mutants!
  • 6. TYMV can form a molecular “container” after release of RNA, nano-inspired applications with a protein shell with a small “hole” before After freeze-thaw
  • 7. A CP cleavage product formed during RNA ejection hindered in one of our “super-stable” virion mutants &! SDS-PAGE: Coomassie stain ( ! Wt Mass Spec after freeze- 26 17 % RNA release ! C thaw: intact particle ! "# $! !!ATC Virion ATC Virion / 01! / 23! Wt Ky &! SDS-PAGE: Coomassie stain (! ) *&) !!!*+, !!!&*, - , . , +! Western blot ' ! 26 1 min. / 01! %! exposure Intensity 17 ! "#$! !!ATC Virion ATC%Virion ! / 01! / 23! Wt Ky min. 10 exposure ) *&) !!!*+, !!!&*, - , . , +! / 23! ! Western blot 'pH 11.5 pH 4 pH11.5 pH 1 min. 4 %! / 01! exposure Intensity Ky Wt % min. ! +132 +132 10 # !Coomassie SDS-PAGE exposure / 23! +132 pH 11.5 pH 4 pH11.5 pH 4 %! 13 % ! 12 Ky 14Wt 15 16 Mass (Da) +132 +132 Fourier Transform-Ion Cyclotron Resonance Wt CsCl gradient fractions Coomassie SDS-PAGE #! +132 (FTICR) Mass spectrometry
  • 8. TYMV dual-subgenomic RNA for expression of GFP and GUS. Future downstream use for vaccine development
  • 9. Biophysical studies of TYMV Characterization empty, virion and intermediate particles Northerns, Westerns, gradient centrifugation, etc.
  • 10. Previous Work (M.S degree at OHSU): Signaling of a Cytomegalovirus chemokine receptor US28: plenty of cloning, tissue culture, immuno-precipitation/fluorescence and construction of CMV knockout mutants US28 chemokine
  • 11. Recent TYMV article & (cover image) Jan 2011, more publications to come