This case report describes a 52-year-old male farmer who presented with abdominal pain and bleeding for several months. Imaging revealed multiple liver abscesses and a mass arising from the second part of the duodenum. Biopsy of the mass during endoscopy indicated adenocarcinoma. The patient underwent a Whipple procedure where a 6x5cm mass was removed. Post-operative biopsy found it to be a malignant gastrointestinal stromal tumor (GIST). The patient was referred for chemotherapy. GISTs of the duodenum are rare but often diagnosed via endoscopy with biopsy. Surgical resection is the main treatment but imatinib may help downstage tumors for less invasive surgery or as adjuvant therapy.