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Alberta Asset Map
  for Health Research
Innovation Platforms
Version 3




2
Table of Contents

Executive Summary..................................................................................................................................... 5
Introduction................................................................................................................................................. 7
   AIHS Strategic Implementation Process................................................................................................... 7
   Innovation Platforms............................................................................................................................... 8
Technological Platforms............................................................................................................................ 10
  Genome Sciences................................................................................................................................... 10
  Imaging.................................................................................................................................................. 12
  Animal Models....................................................................................................................................... 14
  Nanotechnology..................................................................................................................................... 15
  Biosafety................................................................................................................................................ 16
  Other Technological Platforms.............................................................................................................. 16
Information Based Platforms .................................................................................................................... 21
   Health Informatics................................................................................................................................. 21
   Bioinformatics........................................................................................................................................ 21
   Patient Database/ Registries.................................................................................................................. 22
Human Resource Based Platforms ............................................................................................................ 23
Patient Based Research Platforms............................................................................................................. 27
Other Health Research Support Capabilities............................................................................................. 30
  Pre-Clinical Facilities ............................................................................................................................. 30
  Biorepositories ...................................................................................................................................... 30
  Clinical Trials Support Units .................................................................................................................. 31
  Business Support Platforms................................................................................................................... 33
Other Health Research Entities & Facilities............................................................................................... 34
  Knowledge Translation.......................................................................................................................... 35
  Networks............................................................................................................................................... 37
Key and Apparent Strengths ..................................................................................................................... 38
  Comparative Positioning........................................................................................................................ 38
  Identified Strengths............................................................................................................................... 39
     Stem Cells.......................................................................................................................................... 39
     Nanotechnology................................................................................................................................ 39
     Prion Research................................................................................................................................... 39
     Genomics........................................................................................................................................... 39
     Virology.............................................................................................................................................. 40
     Imaging.............................................................................................................................................. 40
     Cardiovascular Diseases..................................................................................................................... 40
     Cancer................................................................................................................................................ 40



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Neurological Diseases and Rehabilitative Medicine.......................................................................... 41
       Engineering........................................................................................................................................ 41
Opportunities and Challenges................................................................................................................... 42
  Opportunities and Challenges in Areas of Strength ............................................................................... 42
  Other Challenges and Opportunities..................................................................................................... 42
    Challenges......................................................................................................................................... 42
    Opportunities.................................................................................................................................... 43
Innovation Platform Facilitators................................................................................................................ 44
  AIHS Ethics and Innovation Platforms Unit............................................................................................ 44
  Strategic Clinical Networks.................................................................................................................... 44
  Laboratory Alberta................................................................................................................................. 45
  Campus Alberta..................................................................................................................................... 46
  Centres for Research and Commercialization (CRC) .............................................................................. 46
  Academic Health Network..................................................................................................................... 47
Glossary..................................................................................................................................................... 48
Methodology............................................................................................................................................. 49
 Process................................................................................................................................................... 49
 Constraints............................................................................................................................................. 51
References................................................................................................................................................. 52




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EXECUTIVE SUMMARY
 This Asset Map inventories the platforms (organizations, systems and assets) that support health
 research and innovation in the province of Alberta. Through the development of this Asset Map,
 Alberta Innovates Health Solutions (AIHS)’ will be better able to determine the province’s greatest
 strengths and challenges and to determine which areas require priority focus by AIHS and its partners
 and stakeholders.

 AIHS defines Innovation Platforms as “a technological and organizational environment conducive to
 discovery and knowledge development that will help fuel innovation.” An Innovation Platform is more
 than just infrastructure, it is a roadmap for innovation, an approach that:

     •   drives technological, scientific and conceptual innovation to advance research in health

     •   leverages a variety of competencies and assets (including those of partners)

     •   cuts across traditional organizational boundaries to capture province-wide opportunities and
         enable seamless handoffs of ideas and projects across the discovery to application research
         spectrum

     •   integrates “technology push” and “market pull” to drive technically actionable and meaningful
         innovations

 Within this Asset Map, Innovation Platforms are categorized in tables as

     •   technological platforms

     •   information based platforms

     •   human resource based platforms

     •   patient-based research platforms

     •   other health research support capabilities

     •   other health research organizations

 Provincial strengths were identified in several areas of basic research, such as virology, prion research,
 genotyping, and bioinformatics (but, except for metabolomics, no other areas of genomics). Basic
 research strengths that have led to some translational successes include metabolomics,
 nanotechnology, neuroscience, and stemcells. Other strengths in include:

     •   imaging

     •   rehabilitative medicine, including neurological subspecialties and reconstructive sciences



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•   cardiovascular research

      •   bioengineering, with the province’s expertise in this field underpinning its strengths in
          nanotechnology, medical device development, and tissue bank management.

There are a number of organizations which will help facilitate the province’s new approach to health
research and innovation including:

      •   AIHS Ethics and Innovation Platforms Unit

      •   Strategic Clinical Networks

      •   Laboratory Alberta

      •   Campus Alberta

      •   Academic Health Network

      •   Centres for Research and Commercialization (CRC)




  6
INTRODUCTION
 Alberta Innovates Health Solutions (AIHS)’ mission is to work with partners and stakeholders to
 design, develop, deliver and evaluate programs, services, and initiatives to help achieve focus and
 excellence in innovation and health research, and provide solutions to health sector problems. The
 result will be a robust health-research-based economy in Alberta.

 To succeed in fulfilling this mission, AIHS uses the following strategies:

     •   Support Discovery: AIHS will support excellence in innovation and health-related research in
         defined areas of strategic focus.

     •   Stimulate Application: AIHS will collaborate with the research community, the private sector,
         and the health care community to meet, through research and innovation, their priority needs
         and challenges. AIHS will also facilitate the translation of research findings into an efficient and
         effective health system (or a business advantage).1

 AIHS’ partners and stakeholders include:

     •   Alberta Enterprise and Advanced Education (EAE)

     •   Alberta Health and Wellness (AHW)

     •   Alberta Innovates corporations (AI)

     •   Alberta Health Services (AHS)

     •   Post-secondary institutions

     •   Research organizations and funders


AIHS Strategic Implementation Process
 In 2010, the Government of Alberta released Alberta’s Health Research and Innovation Strategy
 (AHRIS) which sets provincial health research priorities for ten years. AHRIS creates common aims for
 the health system and the health research and innovation system. These aims focus on three high-
 level strategic priorities:

     •   Wellness at Every Age—improved health outcomes for Albertans

     •   Innovative Health Service Delivery—a more accessible and responsive health care system

     •   Enhanced Socio-Economic Outcomes—diversified opportunities that benefit Alberta’s economy




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The Government expects that the many organizations, entities, and individuals who make up the
 research and innovation system in Alberta will move over time to focus their research investments
 and attention on meeting these priorities.

 In 2011, AIHS initiated a Strategic Implementation Process designed to elicit stakeholder input into the
 organization’s strategic direction and program implementation. The priorities and areas of strategic
 focus described in AHRIS were used as a framework for the Process and the creation of Working
 Groups, including an Innovation Platforms Working Group.

 To facilitate their discussions, the Innovation Platforms Working Group requested an Asset Map of the
 Innovation Platforms in Alberta. The first version of this document was released in September 2011.
 This Asset Map provides a snapshot of Alberta’s health research assets including its strengths,
 opportunities, and challenges.

 The Asset Map has been updated in order to ensure that the document reflects the evolution of AIHS’
 strategic and operational direction since creation of the first draft and to provide AIHS’ broad
 stakeholder community an opportunity to ensure the accuracy of the innovation platforms considered
 within the document.


Innovation Platforms
 The IP Working Group adopted the AHRIS definition of Innovation Platforms as “a technological and
 organizational environment conducive to discovery and knowledge development that will help fuel
 innovation.” The Working Group expanded the definition to include the concept that an Innovation
 Platform is more than just infrastructure, it is a roadmap for innovation, an approach that:

     •   drives technological, scientific and conceptual innovation to advance research in health

     •   leverages a variety of competencies and assets (including those of partners)

     •   cuts across traditional organizational boundaries to capture province-wide opportunities and
         enable seamless handoffs of ideas and projects across the discovery to application research
         spectrum

     •   integrates “technology push” and “market pull” to drive technically actionable and meaningful
         innovations

 Within this Asset Map, the health research innovation platforms are categorized as

     •   technological platforms, e.g., those related to the genome sciences, imaging, animal models,
         nanotechnology, biosafety, other technology

     •   information based platforms, e.g., bioinformatics, health informatics, information technology,
         patient data registries



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•   human resource based platforms, e.g., training facilities and courses

    •   patient-based research platforms which involves patients e.g., clinical trials, patient
        management, service delivery

    •   other health research support capabilities, e.g., pre-clinical facilities, biorepositories/ tissue
        banks, clinical trials support, business support

    •   other health research organizations, e.g., health research facilities conducting numerous
        activities, those specializing in knowledge transfer, networks.

Each of these categories include core facilities (often innovation platforms themselves) which are
accessible by the broader community and include personnel, equipment, information technology,
buildings, etc. They contain sophisticated instruments/ technologies and staff with expertise in:

    •   operating the instruments or harnessing the technologies

    •   interpreting the data (informatics and biostatistics)

    •   providing consultation on how best to use the resources to address distinct research questions.

The availability of core facilities generally results in improved research efficiency and productivity, as
individual researchers are not trained in the techniques being offered and do not have to learn them2.




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TECHNOLOGICAL PLATFORMS
  Technological Platforms include those related to:

    •    genome sciences

    •    imaging

    •    animal models

    •    nanotechnology

    •    biosafety

    •    other technological areas, e.g. stem cell facilities, other cell processing facilities


Genome Sciences
    •    Most of the genomics equipment in Alberta is utilized in genotyping, proteomics and
         metabolomics.

    •    The sole next generation sequencer in Alberta, an important instrument for today’s genome
         sequencing projects, is housed at the Alberta Ingenuity Centre for Livestock Genomics
         Technology (aka Alberta Bovine Genomics Program) at UofA. This facility focuses on agricultural
         genomics; but, the equipment could be utilized in health research. This is also true for other
         equipment within agricultural genomics facilities.

    •    Conventional sequencers are found at the University Core DNA Services at UofC and the Applied
         Genomics Centre at UofA.

    •    At least six of the genomics platforms have a strong bioinformatics component or specialize in
         bioinformatics.


Genomics Technology
                                                  Facility                                        Affiliation
Agriculture Genomics and Proteomics Unit                                                            UofA
Alberta Ingenuity Centre for Livestock Genomics Technology (Alberta Bovine Genomics Program)        UofA
Alberta Transplant Applied Genomics Centre (ATAGC)                                                  UofA
Applied Genomics Centre                                                                             UofA
Centre of Excellence in Gastrointestinal Inflammation & Immunity Research (CEGIIR)                  UofA
Institute for Biomolecular Design (IBD) (incorporates the former Alberta Peptide Institute)         UofA
Facility                                         Affiliation


Mass Spectrometry Facility                                                                             UofA
Microarray and Proteomics Facility                                                                     UofA
National High Field Nuclear Magnetic Resonance Centre (NANUC)                                          UofA
Pan Alberta Metabolomics Platform (PanAMP)                                                             UofA
Signal Transduction Group                                                                              UofA
University of Alberta (Other Labs) - 11 additional facilities                                          UofA
Bioinformatics Innovation Centre (formerly Integrated and Distributed Bioinformatics Platform for      UofC
Genome Canada)
Bio-NMR Center                                                                                         UofC
Chemical Instrumentation Facility                                                                      UofC
Clara Christie Centre for Mouse Genomics (CMG)                                                         UofC
Institute for Biocomplexity and Informatics                                                            UofC
Snyder Institute of Infection, Immunity & Inflammation                                                 UofC
Southern Alberta Cancer Research Institute (SACRI)                                                     UofC
Southern Alberta Mass Spectrometry Centre for Proteomics (SAMS)                                        UofC
Southern Alberta Microarray Facility (SAMF)                                                            UofC
Sun Centre of Excellence for Visual Genomics (COE)                                                     UofC
University Core DNA (UCDNA) Services                                                                   UofC
University of Calgary (Other Labs) - 3 additional facilities                                           UofC
Nuclear Magnetic Resonance (NMR) Center                                                                UofL
University of Lethbridge (Other Labs) - 2 additional facilities                                        UofL
Autism Research Centre, AHS                                                                             AHS
                                                                                                     (Glenrose)

Genomics Platforms with Major Bioinformatics Capabilities
                                                    Platform                                         Affiliation
 Bioinformatics Innovation Centre (formerly Integrated and Distributed Bioinformatics Platform for     UofC
 Genome Canada)
 Bio-NMR Center                                                                                        UofC
 Centre of Excellence in Gastrointestinal Inflammation & Immunity Research (CEGIIR) IP                 UofA
 Institute for Biocomplexity and Informatics                                                           UofC
 Pan Alberta Metabolomics Platform (PanAMP)                                                            UofA
 Sun Centre of Excellence for Visual Genomics (COE)                                                    UofC




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Imaging
  Imaging for health research includes:

    •    magnetic resonance imaging (MRI)

    •    functional MRI

    •    x-rays

    •    computed tomography (CT; includes SPECT [single-photon emission computed tomography])

    •    positron emission tomography (PET)

    •    electron microscopy

    •    image processing.

  There are a number of facilities in Alberta with strong capabilities in imaging people, animals, cells and
  materials. Six facilities of these facilities specialize almost exclusively in imaging:

    •    Bio-imaging Facility, University of Lethbridge

    •    Cell Imaging Centre, University of Alberta

    •    Quantitative Imaging Centre, University of Alberta – the Centre’s primary focus is petroleum
         recovery and advanced materials, but it can also be used for health related applications

    •    Bone Imaging Laboratory, University of Calgary

    •    Microscopy and Imaging Facility, University of Calgary

    •    Seaman Family MR Research Centre, University of Calgary

  NOTE: Although all the groups listed in the table below used imaging in their research, some of the
  groups may not use imaging equipment located in their own research facility.


Imaging Facilities
                                               Facility                                          Affiliation
Alberta Cardiovascular & Stroke Research Centre (ABACUS) (Alberta University Hospital)             UofA
Alberta Centre for Surface Engineering and Science (ACSES)                                         UofA
Alberta Transplant Applied Genomics Centre (ATAGC)                                                 UofA
Bebensee Schizophrenia Research Unit                                                               UofA
Cardiovascular Research Centre                                                                     UofA
Cell Imaging Centre                                                                                UofA


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Facility                                              Affiliation


Computational Memory Lab                                                                                    UofA
Cross Cancer Institute (UofA/ AHS)                                                                          UofA
Department of Cell Biology, University of Alberta                                                           UofA
Depression and Stress Disorder Research Group                                                               UofA
Immunology Network (ImmuNet)                                                                                UofA
Li Ka Shing Institute of Virology (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of     UofA
Excellence in Viral Hepatitis Research)
National Institute for Nanotechnology (NINT)                                                                UofA
Neurochemical Research Unit (NRU)                                                                           UofA
Peter S. Allen MR Research Centre (formerly In Vivo NMR)                                                    UofA
Pharmaceutical Orthopaedic Research Lab. (PORL)                                                             UofA
Quantitative Imaging Centre                                                                                 UofA
Surgical Medical Research Institute (SMRI)                                                                  UofA
University of Alberta (Other Labs) – 4 labs (Begg, Jhamandas, Uludag, Zemp)                                 UofA
Women & Children's Health Research Institute (WCHRI)                                                        UofA
Advanced Micro/nanosystems Integration Facility (AMIF)                                                      UofC
Alberta Innovates Centre for Integrated Biomedical Technology (Biovantage Inc.)                             UofC
Bone Imaging Laboratory                                                                                     UofC
Libin Cardiovascular Institute of Alberta (LCIA)                                                            UofC
Mental Health Centre for Education and Research (MHCER)                                                     UofC
Microscopy and Imaging Facility                                                                             UofC
Seaman Family MR Research Centre                                                                            UofC
Snyder Institute of Infection, Immunity & Inflammation                                                      UofC
Southern Alberta Cancer Research Institute (SACRI)                                                          UofC
Bio-imaging Facility                                                                                        UofL
Canadian Centre for Behavioural Neuroscience                                                                UofL




  13
Animal Models
 The following facilities develop animal models for use in health research. These models range from
 transgenic mice and zebra fish to mouse and catfish immunological models.


Animal Models Developed for Health Research
                Facility                                          Animal Models                           Affiliation
Centre of Excellence in                   “Animal disease models”                                           UofA
Gastrointestinal Inflammation &
Immunity Research (CEGIIR)
Pulmonary Research Group (PRG)            Murine model of ovalbumin induced airway                          UofA
                                          hyperresponsiveness and inflammation
Surgical Medical Research Institute       Transgenic mice                                                   UofA
(SMRI)
University of Alberta (Other Labs)        Allison Lab has transgenic zebra fish                             UofA
                                          Baldwin Lab has developed a TCR transgenic mouse model
                                          Michalak Lab has transgenic mice
                                          Stafford Lab has developed a channel catfish immunological
                                          model
Alberta Children's Hospital Research      Transgenic mice                                                   UofC
Institute for Child and Maternal Health
Clara Christie Centre for Mouse           “Tools to effectively generate and study transgenic mice”         UofC
Genomics (CMG)
Embryonic Stem Cell (ESC) Facility        Development of animal models via targeted mutagenesis;            UofC
                                          animal injury models
Snyder Institute of Infection, Immunity   Mouse phenomics facilities, including transgenic mice             UofC
& Inflammation
Southern Alberta Cancer Research          Transgenic mouse facility                                         UofC
Institute (SACRI)
University of Calgary (Other Labs)        Child Lab developing developing new transgenic lines of zebra     UofC
                                          fish for visualizing vascular development
                                          Cross Lab has transgenic mice
                                          Kubes Lab has established an in vivo septic transgenic mouse
                                          model (to elucidate the biological responses to sepsis).




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Nanotechnology
  Nanotechnology (nanotech) has utility in electronics, materials construction, machinery and tools,
  pharmaceuticals, and health care. Nanotech can be applied to pharmaceuticals and health care for:

    •    miniaturized diagnostic implants (for early diagnosis and monitoring of illnesses)

    •    nanoscale coatings to improve the bioactivity and biocompatibility of implants

    •    ultra-precise drug delivery systems

    •    sensors for Lab-on-a-Chip

    •    bone and tissue regeneration.

  According to Government of Alberta’s 2009 Nanotechnology Asset Map3, seven facilities are applying
  nanotechnologies to health research, including a pan-Canadian facility headquartered in Edmonton,
  the National Institute for Nanotechnology.


Nanotechnology
                                                  Facility                                         Affiliation
Advanced Micro/nanosystems Integration Facility (AMIF)                                               UofC
Alberta Centre for Advanced MNT Products (ACAMP)                                                  UofC & UofA
Alberta Centre for Surface Engineering and Science (ACSES)                                           UofA
Integrated Nanosystems Research Facility (formerly Centre of Excellence in Integrated NanoTools      UofA
[CEIN])
Micro and Nanofabrication Facility (NanoFab)                                                         UofA
National High Field Nuclear Magnetic Resonance Centre (NANUC)                                        UofA
National Institute for Nanotechnology (NINT) IP                                                      UofA




  15
Biosafety
  Biosafety Level 2 and 3 (BSL-2, BSL-3) facilities exist at five locations in Alberta. BSL-2 facilities are
  suitable for work involving agents that pose moderate hazards to personnel and the environment,
  while BSL-3 facilities allow research on agents that may cause serious or potentially lethal diseases but
  for which treatments exist, e.g., human immunodeficiency virus [HIV], West Nile Virus4.


Biosafety Facilities
                Facility                                              BSL Facility                     Affiliation
Centre for Prions and Protein Folding      “Areas with analytical instrumentation are designated for     UofA
Diseases                                   biocontainment use”
Centre of Excellence in Gastrointestinal   BSL-3 laboratory to isolate, characterize and formulate       UofA
Inflammation & Immunity Research           diagnostic tests for the human betaretrovirus
(CEGIIR)
Li Ka Shing Institute of Virology          BSL-2 and BSL-3- animal biocontainment suites                 UofA
(formerly Alberta Institute for Viral
Immunology [AIVI] and Centre of
Excellence in Viral Hepatitis Research)
Pharmaceutical Production Research         BSL-2 tissue culture                                          UofC
Facility (PPRF)
University of Calgary (in association      BSL-2 laboratory space                                        UofC
with the Alberta Prion Research
Institute)


Other Technological Platforms
  Other health research technological platforms include those related to:

    •    biochemistry

    •    chromatography

    •    flow cytometry and cell sorting

    •    histochemistry

    •    histopathology

    •    microbiology

    •    spectrophotometry




  16
Much of the equipment related to this research such as spectrometers, gas and liquid
  chromatography (GC and LC), microscopes, etc. can be found in many other laboratories in Alberta’s
  universities and colleges that were not identified for this report.


Other Technological Platforms
         Facility/ Affiliation                                   Equipment/ Expertise                            Affiliation
Alberta Diabetes Institute (ADI)        Stem cell facility                                                         UofA
Alberta Innovates Centre for            Carbohydrate library screening capabilities; advanced electrospray         UofA
Carbohydrate Science (AICCS)            ionization mass spectrometry (ESI-MS) instrumentation; X-ray
                                        crystallography; cell engineering
Biological and Medicinal Chemistry      Biomolecular design, peptide array synthesis                               UofA
Laboratory (BMCL)
Centre for Prions and Protein           “Communal areas with analytical instrumentation”, biochemistry             UofA
Folding Diseases                        wet-lab activity, histopathology
Centre of Excellence in                 Tissue storage and processing, molecular biology (FPLC, HPLC),             UofA
Gastrointestinal Inflammation &         endoscopy, in vitro models
Immunity Research (CEGIIR)
Department of Chemistry,                (i) Analytical and Instrumentation Lab - spectrophotometers,               UofA
University of Alberta                   spectrometers, microscopes, GC, HPLC-MS, etc. (ii) Biological
                                        Services Lab– gel electrophoresis; cell sorting, collecting and other
                                        cell chemistry equipment; etc. (iii) X-ray Crystallography Lab
Faculty of Physical Education and       Numerous pieces of equipment to measure human movement                     UofA
Recreation                              capture and analysis
Flow Cytometry Facility                 Flow cytometry, cell sorting, data analysis                                UofA
Immunology Network (ImmuNet)            Biophysical research (BIAcore technology, multi-angle static and           UofA
                                        quasi-elastic light scattering detector), cell sorting
Institute for Biomolecular Design       Amino acid analysis, peptide synthesis                                     UofA
(IBD) (incorporates the former
Alberta Peptide Institute)
Institute for Reconstructive            Anechoic chamber facility; equipment to facilitate assessment of           UofA
Sciences in Medicine (iRSM), UofA/      jaw function; advanced digital technologies, virtual reality and solid
AHS                                     biomodeling for medical modeling research; biomechanical
                                        engineering
Li Ka Shing Institute of Virology       Cell sorting and other core facilities (not specified)                     UofA
(formerly Alberta Institute for Viral
Immunology [AIVI] and Centre of
Excellence in Viral Hepatitis
Research)
Lipid and Lipid Metabolite Analysis     FDLC lipoprotein profiling, separation, and purification                   UofA
Core Facility
Mass Spectrometry Facility              11 mass specs applied to other research areas as well as genomics          UofA
Membrane Protein Research Group         DNA and protein manipulations, UV /visual spectrophotometers,              UofA
                                        spectrofluorimeters, HPLC, liquid scintillation counting, electron




  17
Facility/ Affiliation                                  Equipment/ Expertise                        Affiliation
                                       paramagnetic resonance
Molecular and Cell Biology of Lipids   High performance liquid chromatography (HPLC), fast protein liquid     UofA
                                       chromatography (FPLC), gas chromatography
Muttart Diabetes Research &            Core laboratory facilities (not specified).                            UofA
Training Centre
Signal Transduction Group (STRG)       Biochemistry, cell biology                                             UofA
Surgical Medical Research Institute    Rooms for operating on large and small animals; biochemistry and       UofA
(SMRI)                                 histology laboratory
UofA (Other Labs)                      Elliott Lab has cryobiology facilities                                 UofA
                                       Glerum Lab has microfluidic chip-based assays for use in studying
                                       mitochondrial disease
                                       Holt Lab has spectrophotometer, cell fermenter and purifier,
                                       chromatographs, other
                                       Jhamandas Lab has equipment for immunohistochemistry, in situ
                                       hybridization, single cell RT-PCR, electrophysiology
                                       Jurasz Lab has equipment for platelet aggregometry, flow
                                       cytometry, microscopy, immunoblot, zymography, PCR, and in vitro
                                       angiogenesis and endothelial cell migration assays
                                       Martin Lab and Environmental Health Sciences Lab has
                                       chromatographic systems, mass spectrometry, bioanalytical
                                       instruments including PCR and microarray and other equipment
                                       Michalak Lab has various stem cell lines
                                       Sipione Lab has cell culture, biochemistry and molecular biology
                                       facilities
                                       Spyracopoulos Lab has NMR spectrometers, UV/ visible
                                       spectrometer, FPLC
                                       Uludag Lab has facilities to synthesize and characterize small
                                       organic molecules and polymeric materials, gel electrophoresis,
                                       fluorescent microscope, thermocyclers, HPLC systems, flow
                                       cytometer
Women & Children's Health              Electrophysiology, molecular biology, stem cell research and
                                                                                                              UofA
Research Institute (WCHRI)             physiological measurement labs, animal facilities
Alberta Children's Hospital            Stem cell facility, cell and tissue culture
Research Institute for Child and                                                                              UofC
Maternal Health
Alberta Innovates Centre for           Biosensors, tissue characterization
Integrated Biomedical Technology                                                                              UofC
(Biovantage Inc.) IP
Biomedical Technical Support           Electronic and mechanical
                                                                                                              UofC
Centre
Centre for Advanced Technologies       Histopathology (veterinary medicine but may have utility in human
                                                                                                              UofC
in the Life Sciences (CAT)             health research)



  18
Facility/ Affiliation                                 Equipment/ Expertise                                Affiliation
Centre for Bioengineering Research   Numerous bioengineering facilities including those for tissue and
                                                                                                                     UofC
and Education (CBRE)                 cellular engineering
Chemical Instrumentation Facility    UV / visible spectrophotometers, EPR spectrometer, circular
                                                                                                                     UofC
                                     dichroism / polarimeter, elemental analyzer
Clara Christie Centre for Mouse      Embyronic stem cell /targeted mutagenesis, 3D morphometrics.
                                                                                                                     UofC
Genomics (CMG)
Clark H. Smith Brain Tumour Centre   Brain tumor stem cell core
                                                                                                                     UofC
IP
Department of Chemistry,             Includes the following facilities: (i) Chemistry instrumentation
University of Calgary                facility (see above); (ii) X-ray crystallography service; (iii) Electronics
                                                                                                                     UofC
                                     shop; (iv) High performance computing cluster; (v) Science
                                     workshop with various machine tools.
Embryonic Stem Cell (ESC) Facility   Bioreactors, equipment for the expansion and differentiation of
                                                                                                                     UofC
                                     embryonic stem cells
Hotchkiss Brain Institute            Stem cells                                                                      UofC
Pharmaceutical Production            Pharmaceutical scale-up, modeling cell behaviour; development of
Research Facility (PPRF)             bioreactor related technologies, tissue-derived and embryonic stem              UofC
                                     cells; large-scale tissue culture and bioreactor facilities
Snyder Institute of Infection,       Flow cytometer, cell sorter, anaerobic chamber
Immunity & Inflammation
Southern Alberta Cancer Research     Peptide synthesis facility, flow cytometry facility, mouse embryonic
Institute (SACRI)                    stem cell facility; hybridoma and antibodies, fluorescence activated
                                     cell sorting, cell and embryo culture, animal surgery, histology, in            UofC
                                     situ hybridization, immunofluorescence, near infrared protein/DNA
                                     imaging and FPLC
UofC (Other Labs)                    DeVinney Lab has the infrastructure for cell biology, including
                                     microscopes, tissue culture
                                     Dobrinski lab has facilities for stem cell research                             UofC
                                     Thompson Lab has in vivo microscopy and real-time quantitative
                                     PCR infrastructure to investigate neurodegenerative disorders
Canadian Centre for Behavioural      Equipment for fluorescence, confocal, quantitative video- and
Neuroscience                         computer-based behaviour analysis methods, dense array
                                                                                                                     UofL
                                     electroencephalography, in vivo electrophysiology,
                                     immunocytochemistry
Department of Chemistry &            Includes the following equipment: NMR spectrometers; X-ray
Biochemistry, University of          diffractometers; infrared spectrometers; fluorescence, UV-visible,
Lethbridge                           surface plasmon resonance, and raman spectrophotometers; high-
                                                                                                                     UofL
                                     performance computing facility; GC and HPLC; calorimeters; high
                                     temperature and pressure densimeter; protein solutions dynamic
                                     light scattering device
Nuclear Magnetic Resonance           NMR spectrometers with utility in research other than
                                                                                                                     UofL
(NMR) Center                         metabolomics
University of Lethbridge (Other      Wieden Lab has equipment for enzyme kinetics, molecular biology,                UofL



  19
Facility/ Affiliation                                Equipment/ Expertise                          Affiliation
Labs)                                bacterial cell culture, protein and RNA purification
Calgary Laboratory Services, AHS     Laboratory testing, including pathology/cytopathology,
                                                                                                              AHS
                                     biochemistry, hematology, microbiology
Department of Chemistry, Kings       Spectrophotometers, spectrometers, GC, GC-MS                            Kings
University College                                                                                         University
                                                                                                            College
NuRx, AITF                           Chemical, biochemical or fermentation technologies; can help
                                     isolate bioactive ingredients, synthesize compounds, or develop and      AITF
                                     scale-up processes.
Olds College School of Innovation,   Pilot plant and microprocessing facilities for the processing of        Olds
Olds                                 biolubricants and bioproducts.                                         College




  20
INFORMATION BASED PLATFORMS
 Information-based platforms include those related to:

   •    health informatics – a discipline at the intersection of information science, computer science
        and health care which generally refers to the management of patient or health information

   •    bioinformatics – a discipline at the intersection of information science, computer science and
        biological research data

   •    patient databases/registries – research access to anonymized health data and patient
        information, often related to a specific disease type.


Health Informatics
 Health informatics is a discipline at the intersection of information science, computer science, and
 health care (as opposed to bioinformatics which is at the intersection of science, computer science
 and biological research data). Health informatics generally refers to the management of patient or
 health information.


Health Informatics
                                           Facility/ Affiliation                                     Affiliation
Alberta Cardiovascular & Stroke Research Centre (ABACUS), Alberta University Hospital                  UofA
Alberta Centre for Injury Control and Research                                                         UofA
Alberta Dialysis Databank                                                                              UofA
Alberta Innovates Centre for Machine Learning                                                          UofA
Alberta Research Centre for Health Evidence (previously Alberta Research Centre for Child Health
                                                                                                       UofA
Evidence)
Centre for Health Evidence (CHE)                                                                       UofA
Alberta Health Services Division of Population Health, Tom Baker Cancer Centre                         UofA
Calgary Centre for Clinical Research (CCCR)                                                            UofC
Health Innovation & Information Technology Centre (HiiTeC) (previously Health Telematics Unit and
                                                                                                       UofC
Telehealth/e-Health Research & Training Program)
Libin Cardiovascular Institute of Alberta (LCIA)                                                       UofC
Alberta IBD Consortium                                                                              UofA & UofC
Alberta Centre for Child, Family and Community Research (ACCFCR), AHS                                   AHS
Alberta Health Services (AHS) Office of Surgical Research, AHS                                          AHS
Institute of Health Economics (IHE), Edmonton                                                           IHE


Bioinformatics


 21
Bioinformatics is the intersection between information science, computer science and biological
  research data. The first six bioinformatics facilities listed in the table below were included as part of
  the inventory of genomics platforms in the previous section. The seventh facility, the Flow Cytometry
  Facility at UofA, analyzes data from flow cytometry and cell sorting.


Bioinformatics Capabilities
                                                 Facility                                            Affiliation
 Bioinformatics Innovation Centre (formerly Integrated and Distributed Bioinformatics Platform for     UofC
 Genome Canada)
 Bio-NMR Center                                                                                        UofC
 Centre of Excellence in Gastrointestinal Inflammation & Immunity Research (CEGIIR) IP                 UofA
 Institute for Biocomplexity and Informatics                                                           UofC
 Pan Alberta Metabolomics Platform (PanAMP)                                                            UofA
 Sun Centre of Excellence for Visual Genomics (COE)                                                    UofC
 Flow Cytometry Facility                                                                               UofA


Patient Database/ Registries
  Patient databases and registries contain health data and patient information which has been
  anonymized in order to allow researcher access. The information often relates to a specific disease
  type.


Patient Registries
                                                Registry                                             Affiliation
Child and Youth Data Laboratory, Alberta Centre for Child, Family and Community Research (ACCFCR)       AHS
Alberta Dialysis Databank                                                                              UofA
Alberta IBD Consortium                                                                               UofA & C
Alberta NETCARE                                                                                         AHS
Alberta Trauma Registry                                                                                 AHS
Clark H. Smith Brain Tumour Centre                                                                     UofC
Wilson Disease Mutation Database                                                                       UofA




  22
HUMAN RESOURCE BASED PLATFORMS
  All health research involves training of some kind, from skills in basic science techniques to patient
  management but the health research entities listed below identify specific training facilities.


Human Resource Based Platforms
                  Facility                                           Training                          Affiliation
Agriculture Genomics and Proteomics       Provides training for performing genomic and proteomic         UofA
Unit                                      experiments, serves as a teaching facility for graduate
                                          courses
Alberta Institute for Human Nutrition     Offers “opportunities for multidisciplinary and                UofA
                                          interdisciplinary education”
Centre for Ambulatory Rehabilitation      Hands-on teaching site for rehabilitation students and         UofA
Research and Education (CARRE) IP         continuing education for practicing clinicians
Centre for Health Evidence (CHE)          Supports the teaching of evidence-based health care and        UofA
                                          provides a number of educational services
Centre for Health Promotion Studies       Interdisciplinary graduate programs                            UofA
Centre for Neuroscience                   Focused on administering a graduate program, an                UofA
                                          undergraduate honors program and a seminar program
Centre for the Advancement of Minimally   Provides a centralized training site for residents and         UofA
Invasive Surgery (MIS) (CAMIS), Royal     professional development in MIS techniques for surgeons
Alexandra Hospital                        and allied health professionals
Complementary & Alternative Research      Create a supportive and collaborative environment that         UofA
& Education (CARE)                        fosters learning, at all health care provider levels about
                                          CAM therapies, products
Department of Public Health Sciences      Graduate programs on health policy and management,             UofA
                                          health technology assessment, epidemiology and
                                          biostatistics, environmental health and global health
Faculty of Physical Education and         Physical education and recreation faculty with numerous        UofA
Recreation                                courses and programs
Immunology Network (ImmuNet)              Various educational and networking events, including           UofA
                                          seminars and a one day retreat
Institute for Continuing Care Education   Participates in innovative education programs                UofA, AHS,
and Research (ICCER), with AHS, others                                                                   others
Institute for Stuttering Treatment and    Offers advanced professional training for speech-language      UofA
Research (ISTAR)                          pathology students and clinicians
International Institute for Qualitative   Offers a wide variety of training opportunities through        UofA
Methodology (IIQM)                        annual conferences, courses, and workshops
John Dossetor Health Ethics Centre        Hosts health ethics seminar series, a symposium, and           UofA
                                          workshops. Offers graduate courses in healthcare ethics,
                                          research ethics, public health ethics, law and policy
Membrane Protein Research Group           Trainee program in the area of structure and function of       UofA




  23
Facility                                             Training                               Affiliation
                                            membrane proteins
Microarray and Proteomics Facility          Teaching facility for graduate and undergraduate courses            UofA
Muttart Diabetes Research & Training        Trains students interested in diabetes-related research             UofA
Centre IP
National High Field Nuclear Magnetic        NMR scientific training, operator training, technical training      UofA
Resonance Centre (NANUC)
Rehabilitation Research Centre (RRC)        Offers seminars and workshops on research methodology               UofA
                                            to faculty, students and clinicians. Develops materials for
                                            use in teaching research methods, ethics, and a variety of
                                            related topics
Surgical Medical Research Institute         Provides major teaching facilities for surgical residents in        UofA
(SMRI)                                      training and for core training (surgical skills) for
                                            postgraduate Year 1 & Year 2, graduate, and summer
                                            students. Also Continuing Medical Education courses
Centre for Bioengineering Research and      Responsible for delivering the undergraduate specialization         UofC
Education (CBRE)                            in bioengineering in the Schulich School of Engineering
Health Innovation & Information             Works closely with the department of Community Health               UofC
Technology Centre (HiiTeC) (previously      Sciences and the Medical Ward of the 21st
Health Telematics Unit and Telehealth/e-    Century to operate training programs that leverage
Health Research & Training Program)         information technologies and the HiiTeC computing
                                            platforms
Libin Cardiovascular Institute of Alberta   Coordinates all cardiovascular education within both AHS            UofC
(LCIA) IP                                   (Calgary) and UofC.
Microscopy and Imaging Facility             Holds workshops and practical courses in microscopy and             UofC
                                            image processing
Ward of the 21st Century IP (with AHS)      Medical teaching unit at the Foothills Medical Centre            UofC & AHS
Banff International Research Station for    Educational programs and workshops                               Banff Centre
Mathematical Innovation and Discovery
(BIRS) IP, c/o The Banff Centre
Bio-imaging Facility, UofA                  Large teaching component, including Ultrastructure Online,          UofA
                                            an internet-based interactive learning tool designed to
                                            assist students in the study of cell structure and function.
  In addition, the Universities of Alberta, Calgary and Lethbridge offer numerous relevant courses. For
  example:

    •    Tyrell & Palmer highlighted training strengths at UofA in primary care and First Nations
         population health research.

    •    The Nanotechnology Asset Map described hands-on training at UofA Faculty of Engineering in
         Nanoscale System Design (Computer Engineering), Nanoengineering (Electrical Engineering and
         Engineering Physics) and Nano and Functional Materials (Materials Engineering). An
         undergraduate degree with a minor or concentration in Nanoscience is offered at UofC.




  24
•    AITF manages a $3 million per year scholarship program for graduate students in
         nanotechnology fields at Alberta universities.

    •    AIHS offers similar graduate student support programs.

  As well as the training offered by the Universities of Alberta, Calgary, and Lethbridge, 14 other
  educational institutions in the province offer potentially relevant training. In addition, 11 of Alberta’s
  institutions offer nursing courses.


Educational Institutions Offering Courses With Utility in Health Research
        Educational Institution              URL                                Key Information
Alberta College of Medical         http://acmlt.org/         Lab technician courses
Laboratory Technologists
Grand Prairie Regional College     www.gprc.ab.ca            Centre for Research and Innovation
Grant MacEwan University           www.macewan.ca            Various biological and healthcare courses
Concordia University College of    www.concordia.ab.ca       Postgraduate public health course
Alberta
Athabasca University               www.athabascau.ca         Centre for Nursing and Health Studies conducts
                                                             research on health behaviour. It also offers an MSc
                                                             in Health Studies that provides competency in health
                                                             policy, evaluation and planning
Kings University College           www.kingsu.ca             Three potentially relevant science degrees
DeVry Institute of Technology      www.devry.ca              Degree course in Computer Engineering Technology
Keyano College                     http://keyano.ca/         University transfer programs in various relevant
                                                             topics
Medicine Hat College               www.mhc.ab.ca/            University transfer programs in various relevant
                                                             topics
Mount Royal University             www.mtroyal.ca            Various biological and healthcare degrees
Northern Alberta Institute of      www.nait.ca               Programs in: biological sciences technology,
Technology (NAIT)                                            biomedical engineering technology, cytotechnology,
                                                             magnetic resonance, medical laboratory technology,
                                                             medical radiologic technology, nanotechnology
                                                             systems
NorQuest College                   www.norquest.ca           Home to the Centre for Excellence in Continuing Care
Olds College                       www.oldscollege.ca        Conducts research in nutraceuticals, functional
                                                             foods.
Red Deer College                   www.rdc.ab.ca             Medical Laboratory Assistant program
Southern Alberta Institute of      www.sait.ca               Offers courses in health information management,
Technology (SAIT)                                            medical laboratory technology, medical radiologic
                                                             technology, nuclear medicine technology
University of Alberta              www.ualberta.ca           Has over 5000 health science students in 14
                                                             disciplines across 8 health science faculties, including
                                                             one of the most research intensive Faculties of



  25
Educational Institution             URL                                 Key Information
                                                             Nursing in Canada. Has a medical school and
                                                             biomedical engineering capabilities.
University of Calgary            www.ucalgary.ca;            Numerous departments within 6 health science
                                 http://contacts.ucalgary.   faculties. Has a medical school and biomedical
                                 ca/directory/faculties      engineering capabilities.
University of Lethbridge         www.uleth.ca/faculties-     10 relevant departments within the Faculty of Arts
                                 schools                     and Science.




  26
PATIENT BASED RESEARCH PLATFORMS
 Patient based research platforms include all facilities that interact with patients. These include
 centres that conduct clinical trials or use humans as experimental subjects in their research.

 Clinical trials can include:

   •    comparative drug based studies

   •    comparative evaluation of new devices

   •    new patient management models (e.g., hip and knee replacement health service model).

 Many of the facilities that conduct clinical trials also conduct other activities (e.g., patient
 management), although not all activities are patient based (e.g. basic research).

 NOTE: This Asset Map does not identify all the Clinical Trials Units or study sites (CTUs) in the
 province, as this was beyond the scope of the original project. However, any CTUs found during the
 searching of Alberta’s health research assets are included in the table below. As Alberta had 1,866
 clinical trials in progress at the beginning of 2010 (clintrials.gov - a US registry of clinical trials
 conducted around the world), it is clear that not all CTUs are included in this inventory.


Patient Based Research Platforms
                   Facility                                              Description                      Affiliation
Alberta Asthma Centre (including Pulmonary    Conducts clinical trials, patient management and               UofA
Research Group)                               population level research
Alberta Bone and Joint Health Institute       Conducts clinical trials                                   UofC & AHS
(includes McCaig Institute for Bone & Joint
Health)
Alberta Cardiovascular & Stroke Research      Conducts clinical trials                                   UofA (Alberta
Centre (ABACUS)                                                                                           University
                                                                                                           Hospital)
Alberta Centre for Child, Family and          Patient research for public policy and service delivery        AHS
Community Research (ACCFCR)
Alberta Children's Hospital Research          Conducts clinical trials                                       UofC
Institute for Child and Maternal Health
(previously known as Institute of Child and
Maternal Health [ICMH])
Alberta IBD Consortium                        Collect patient data for population level research         UofA & UofC
Alberta NETCARE                               Collects patient health data for use by health providers       AHS
                                              and researchers
Aleksandar Kostov Assistive Technology        Conducts clinical trials                                   UofA & AHS
Research Lab                                                                                             (Glenrose)




 27
Facility                                                Description                        Affiliation
Autism Research Centre                          Patient research subjects but seemingly no clinical          UofA & AHS
                                                trials                                                       (Glenrose)
Bebensee Schizophrenia Research Unit            Patient research subjects but seemingly no clinical             UofA
                                                trials
Bone Imaging Laboratory                         Conducts clinical trials                                        UofC
Canadian Centre for Behavioural                 Patient research subjects but seemingly no clinical             UofA
Neuroscience                                    trials
Centre for the Advancement of Minimally         Patient research subjects but seemingly no clinical          UofA & AHS
Invasive Surgery (CAMIS)                        trials                                                       (Royal Alex
                                                                                                              Hospital)
Centre for Ambulatory Rehabilitation            Conducts clinical trials                                        UofA
Research and Education (CARRE)
Centre of Excellence in Gastrointestinal        Conducts clinical trials                                        UofA
Inflammation & Immunity Research (CEGIIR)
Clark H. Smith Brain Tumour Centre              Conducts clinical trials                                    UofC (SACRI)
Common Spinal Disorders Research Centre         Conducts clinical trials                                        UofA
(CSD)
Complementary & Alternative Research &          Conducts clinical trials                                        UofA
Education (CARE)
Cross Cancer Institute                          Conducts clinical trials                                        UofA
Epidemiology Coordinating and Research          Involved in a large number of single centre, and                UofA
Centre (EPICORE)                                multicentre clinical trials in cardiovascular disease and
                                                other disease areas
Gastrointestinal and Liver Disease Research     Conducts clinical trials                                        UofA
Group
Health Research Innovation Facility             Still under construction although will probably conduct         UofA
                                                trials in the future
Human Neurophysiology Lab.                      Patient research subjects but seemingly no clinical             UofA
                                                trials
Institute for Reconstructive Sciences in        Conducts clinical trials                                        AHS
Medicine (iRSM)                                                                                             (Misericordia)
Institute for Stuttering Treatment and          Patient research subjects but seemingly no clinical             UofA
Research (ISTAR)                                trials
Libin Cardiovascular Institute of Alberta       Conducts clinical trials                                        UofC
(LCIA)
Mazankowski Alberta Heart Institute             Conducts clinical trials                                     UofA & AHS
Northern Alberta Clinical Trials and Research   A research and clinical trials network supporting and        UofA & AHS
Centre (NACTRC) Clinical Trials Support Unit    managing clinical trials
Psychosis Research Unit                         Conducts clinical trials                                        UofC
Psychotherapy Research Group                    Conducts clinical trials                                        UofA
Rehabilitation Neurosciences Research           Working with patients to develop devices. Cannot                UofA
Group                                           determine if they conduct clinical trials



 28
Facility                                               Description                        Affiliation
 SCI Alberta                                    Conducts clinical trials                                       UofA &
                                                                                                               Calgary
 Tom Baker Cancer Center Clinical Research      Conducts clinical trials                                         UofC
 Program
 Ward of the 21st Century                       Conducts clinical trials                                      UofC & AHS
 Women & Children's Health Research             Conducts clinical trials through the Child and Family           UofA
 Institute (WCHRI)                              Clinical Research Unit (CRU) & Women’s CRU.

Other Clinical Trials Units within Alberta
                CTU                                 Description                                     URL
Centre for Sleep and Human            Conducts many Phase II –IV clinical            www.centreforsleep.com
Performance                           trials
Department of Paediatrics,            Members conduct numerous clinical              www.calgaryhealthregion.ca/clin/chil
University of Calgary                 trials                                         d/paed/directory/neonatology.html;
                                                                                     www.ucalgary.ca/paed/

Multiple Sclerosis Patient Care and   Participates in clinical trials                www.albertahealthservices.ca/service
Research Clinic                                                                      s.asp?pid=service&rid=4306

Northwest Dermatology and Laser       Undertaking clinical trials in                 http://northwestdermatology.ca/
Centre                                psoriasis
Pediatric Centre for Weight and       All who enroll in the clinic have the          www.albertahealthservices.ca/pcwh.a
Health (PCWH)                         opportunity to participate as                  sp
                                      research volunteers




  29
OTHER HEALTH RESEARCH SUPPORT CAPABILITIES
 Other health research support capabilities fall into the following categories:

   •    pre-clinical facilities

   •    biorepositories/ tissue banks

   •    clinical trials support facilities

   •    business support platforms


Pre-Clinical Facilities
 Alberta has five facilities that offer pre-clinical services in addition to animal models described above.


Pre-Clinical Platforms
                Facility                                        Description                       Affiliation
Bone Imaging Laboratory                  Studies include pre-clinical and clinical research         UofC
Clark H. Smith Brain Tumour Centre       Has “Pre-Clinical Testing Core”                         UofC (SACRI)
NuRx                                     Can take clients’ products from discovery and               AITF
                                         development through scale-up, prototyping and
                                         regulatory stages, to pre- and post-clinical trials.
Pharmaceutical Production Research       Offers scale-up and manufacturing development at the       UofC
Facility (PPRF)                          pre-clinical stage
Surgical Medical Research Institute      Has experimental surgical facilities, including rooms      UofA
(SMRI)                                   suitable for operating on large and small animals

 An initial CFI investment of $36 million has been leveraged to build three cGMP (current Good
 Manufacturing Practices) cell manufacturing facilities in Toronto, Montréal and Edmonton. These
 facilities will be completed by early 2013 and will join others across the country to form CellCAN, a
 new consortium that plans to support early phase clinical trials across Canada.5


Biorepositories
 Ten biorepositories or tissue banks were identified for this Asset Map. Six of these offer researchers
 appropriately consented tissues, blood, DNA, other molecular data, and anonymized clinical
 information. Four banks offer tissues from patients with cancer. Other tissues include those from
 patients with IBD, rheumatology; heart disease; bone and joint disease; kidney, liver and blood
 diseases. In three facilities, healthy tissue has been obtained for later use in the treatment of cancer




 30
or anemia, or for transplantation. The final facility is a biorepository of different Salmonella genetic
 strains.

 In general, the biobanking groups are small, utilize different protocols and lack a unified approach to
 ethics, shipping, processing or storage. The Canadian BioSample Repository (CBSR) is an attempt to
 bring together all Alberta’s tissue banking with unified Standard Operating Procedures (SOPs).
 Although affiliated with UofA, CBSR offers services across Alberta and Canada. It has specialized
 software that could eventually be applied to all Alberta’s tissue banking facilities, linking them
 together in a cloud computing environment. It also acts as support facility to clinical trials projects.


Alberta’s Tissue Banks
                     Facility                                 Obtained From (Disease Type)              Affiliation
(Forzani & MacPhail) Colon Cancer Screening         Cancer                                             UofC
Centre (CCSC) Biorepository
ACRI Alberta Cancer Research Unit/ ACCRU            Cancer                                             UofC
Alberta Cancer Clinic Research Unit Biorepository
(in SACRI)
Alberta Cord Blood Bank                             (For use in cancer, anemia)                        Edmonton
Brain Tumor Tissue Bank and Bio-Repository          Cancer                                             UofC (SACRI)
Canadian BioSample Repository (CBSR)                IBD; rheumatology; heart disease; bone and joint   UofA
                                                    disease; kidney, liver and blood diseases
Canadian Breast Cancer Foundation (CBCF) Tumor      Cancer                                             UofA
Bank
Comprehensive Tissue Centre                         (For transplantation use)                          AHS
Inflammatory Bowel Disease (IBD) Consortium         IBD                                                UofC
Tissue Bank
Salmonella Genetic Stock Centre                     ID                                                 UofC
Women & Children's Health Research Institute        (For use in cancer, anemia)                        UofA
(WCHRI)


Clinical Trials Support Units
 AIHS is facilitating and coordinating a new initiative, the Alberta Clinical Research Consortium (ACRC),
 to streamline clinical trials support in the province so that there will be a single point of contact
 (rather than the current four or more) for all clinical trials’ administrative activities. This should attract
 additional health research activity and investment to the province. ACRC includes AHS, the College of
 Physicians & Surgeons of Alberta, Covenant Health, UofA (representing NACTRC and others), UofC
 (representing CCCR and others) and the cancer research legacy groups (e.g., ACCRU). It aims to:

   •    improve the efficiency of clinical research administrative processes across the province

   •    standardize legal review guidelines for contracts and agreements related to clinical research




 31
•    establish provincial standards and opportunities for training of clinical researchers and staff.

 As part of the process for creating a single facility for clinical trials support, Alberta’s research ethics
 procedures are also being harmonized with the help of AIHS. In February 2011, the six provincial
 organizations with Research Ethics Boards signed the Research Ethics Reciprocity Agreement. This
 agreement allows for a harmonized ethics review process for multi-jurisdictional health research, i.e.
 the process of ethics review will be streamlined for multi-site health research. Work is underway to
 implement this agreement6.


Clinical Trials Support Units in Alberta
                     Facility                                           Description                         Affiliation
ACRI Cancer Clinical Research Unit (ACCRU)       Coordinates clinical research throughout Alberta.          UofC & AHS
                                                 Offers a single point of contact, ethical approvals,
                                                 and contract negotiations
AHS Laboratory Services Business Performance     Provides clinical laboratory services to clinical trials      AHS
Research and Clinical Trials
Calgary Centre for Clinical Research (CCCR)      Clinical trials and epidemiology co-ordination facility      UofC
Calgary Laboratory Services                      Provides clinical laboratory services to clinical trials      AHS
Canadian BioSample Repository (CBSR)             Processes, stores, and retrieves tissue samples from         UofA
                                                 clinical trials
Canadian VIGOUR Centre (Virtual Coordinating     Manages clinical trials of cardiovascular therapies          UofA
Centre for Global Collaborative Cardiovascular
Research)
Northern Alberta Clinical Trials and Research    A research and clinical trials network supporting and      UofA & AHS
Centre (NACTRC)                                  managing clinical trials
Pan Alberta Metabolomics Platform (PanAMP)       Provides laboratory services to clinical trials              UofA




 32
Business Support Platforms
  Four institutions identified for this Asset Map offer business support services to health researchers
  wishing to translate and commercialize their findings. (NOTE: Similar services may exist, but business
  support and industrial activities were generally outside the scope of this report.)


Business Support Platforms
               Facility                                     Description                          Affiliation
Alberta Centre for Advanced MNT    Provides specialized services in key areas for the             UofA &
Products (ACAMP)                   commercialization of micro nano technology (MNT) products:     Calgary
                                   (i) Marketing & Business Development; (ii) Product
                                   Development; (iii) Packaging and Assembly; (iv) Test and
                                   Characterization.
Alberta Innovates Centre for       A Centre for Research and Commercialization                   UofA/ AITF
Carbohydrate Science
Alberta Innovates Centre for       A Centre for Research and Commercialization                   UofC/ AITF
Integrated Biomedical Technology
(Biovantage Inc.)
NuRx                               Provides people, equipment and facilities to help companies      AITF
                                   grow by providing services that aid in the research,
                                   development and commercialization of novel products




  33
OTHER HEALTH RESEARCH ENTITIES & FACILITIES
 Not all the facilities identified for this Asset Map fit well into the categories described above. The
 following two organizations have not been categorized:

   •    Alberta Prion Research Institute

   •    Alberta Water Research Institute (now operates as AI-EES Water Resources Strategic Area).

 In addition, many of the facilities which have been categorized above have a broad mandate that goes
 beyond the categories prescribed in this document. The majority of organizations undertaking wide-
 ranging activities are involved in research in specific disease areas or population health. These
 organizations are listed below.


Other Health Research Organizations
                                                     Facility/ Affiliation
UofA
Alberta Institute for Human Nutrition
Alberta Transplant Applied Genomics Centre (ATAGC)
Bebensee Schizophrenia Research Unit
Brain Neurobiology Research Program
Centre for Health Evidence (CHE)
Centre for Health Promotion Studies
Centre for Prions and Protein Folding Diseases
Common Spinal Disorders Research Centre (CSD)
Depression and Stress Disorder Research Group
Health Research Innovation Facility
Human Neurophysiology Lab.
Institute for Stuttering Treatment and Research (ISTAR)
Li Ka Shing Institute of Virology (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of Excellence in Viral
Hepatitis Research)
Membrane Protein Research Group
Molecular and Cell Biology of Lipids
Neurochemical Research Unit
Pharmaceutical Orthopaedic Research Lab. (PORL)
Psychotherapy Research Group
Signal Transduction Group
Team to Prevent Blindness
UofA & AHS
Aleksandar Kostov Assistive Technology Research Lab



 34
Facility/ Affiliation


Autism Research Centre
UofC
Institute for Biocomplexity and Informatics
McCaig Institute for Bone & Joint Health
Mental Health Centre for Education and Research
Population Health Intervention Research Centre (PHIRC)
Psychosis Research Unit
UofL
Canadian Centre for Behavioural Neuroscience
AHS
Edmonton Scoliosis Research Group


Knowledge Translation
 All the facilities identified for this Asset Map engage in knowledge translation to some extent, but for
 a number of organizations knowledge translation (KT) is the “raison d’être”. These organizations are
 listed below.


Alberta’s Health Research Knowledge Transfer Platforms
                  Facility                                           Description (Pillar)                 Affiliation
ACADRE – Alberta Network Environments          Where Aboriginal communities and educational                 UofA
for Aboriginal Health Research                 institutions share knowledge
Alberta Centre for Injury Control and          Main roles in injury prevention include education,           UofA
Research                                       promotion of healthy public policy, and knowledge
                                               translation
Alberta Health Services (AHS) Office of        Supports surgical research and evidence-based              UofC & AHS
Surgical Research                              introduction of new technology
Alberta Research and Innovation Centre in      Coordinating efforts and facilitating communication           AHS
Addiction and Mental Health (ARIC)             among a network of stakeholders
Alberta Research Centre for Health             Supports and fosters the development of evidence-based       UofA
Evidence (previously Alberta Research          practice
Centre for Child Health Evidence)
Calgary Institute for Population and Public    Aims to improve health care delivery and population          UofC
Health (CIPPH) (incorporating former           health through a shared research agenda and knowledge
Centre for Health and Policy Studies           exchange between providers and researchers
[CHAPS])
Complementary & Alternative Research &         Equips patients, families and health care providers with     UofA
Education (CARE)                               the knowledge required to ensure CAM is safely
                                               administered and effective
Department of Public Health Sciences           Pursues and disseminates knowledge relevant to               UofA



 35
Facility                                        Description (Pillar)                    Affiliation
                                              managing, monitoring, and improving the quality of
                                              community health status and health services
Health Research Transfer Network of           Network that undertakes activities to strengthen the flow     AIHS
Alberta                                       of knowledge between researchers, practitioners,
                                              patients, and policy makers
iNFORMATICS Research Centre                   Dissemination of information and partnerships with            UofC
                                              research institutions, businesses, and public
                                              organizations
Institute for Continuing Care Education and   Helps identify best practices in continuing care and        UofA, AHS,
Research (ICCER)                              encourages the uptake of them into education and              others
                                              practice
Institute of Health Economics (IHE)           Provides policy relevant research and programs to            UofA &
                                              support evidence-informed healthcare decision making         Calgary
                                              and priority setting
Medically At-Risk Driver Centre               Provides a forum where researchers, policy makers, and        UofA
                                              community stakeholders can work collaboratively on the
                                              implementation of policy and practices
Rehabilitation Research Centre (RRC)          Consults, provides resource materials and connects            UofA
                                              people and organizations to relevant information and
                                              research




 36
Networks
 These networks developed within provincial institutions and organizations.

Alberta’s Health Research Networks
               Facility/ Affiliation                                          Description (Pillar)
UofA
ACADRE – Alberta Network Environments for          Links expertise of Aboriginals, academics, government and community
Aboriginal Health Research                         institutions
Alberta Asthma Centre                              Network of practitioners, interest groups and researchers
Alberta Centre on Aging                            Links research and education groups and works in partnership with
                                                   the government, regional health authorities, community groups,
                                                   gerontological associations, and other organizations
Immunology Network (ImmuNet)                       Interdepartmental and multidisciplinary network at UofA
Institute for Continuing Care Education and        Collaboration between the UofA, NorQuest College, CapitalCare, AHS,
Research (ICCER) (with AHS & others)               Excel Society, and Bethany Society
Northern Alberta Clinical Trials and Research      Research and clinical trials network
Centre (NACTRC) (with AHS)
UofC
Bioinformatics Innovation Centre (formerly         Based at the University of Calgary with nodes in Edmonton, Vancouver
Integrated and Distributed Bioinformatics          and Winnipeg. Also manages BioMoby, an Information and
Platform for Genome Canada)                        Communications Technology network used by researchers across
                                                   Alberta
Calgary Institute for Population and Public        A virtual institute incorporating people at the University of Calgary
Health (CIPPH) (incorporating former Centre        and AHS
for Health and Policy Studies [CHAPS])
Libin Cardiovascular Institute of Alberta (LCIA)   Virtual institute that coordinates all cardiovascular research,
(with AHS)                                         education and patient care within both AHS and UofC
UofA & Calgary
Alberta IBD Consortium                             Links clinicians, researchers and patients across the province
SCI Alberta                                        Group of scientists from UofA and UofC conducting translational
                                                   research in the field of spinal cord injury (SCI)
AHS
Alberta Centre for Child, Family and               Works in conjunction with nine Alberta child-serving ministries, the
Community Research (ACCFCR)                        Government of Canada and numerous other partners and
                                                   collaborators
Alberta Research and Innovation Centre in          Virtual centre of research excellence serving a network of
Addiction and Mental Health (ARIC)                 stakeholders (researchers, practitioners, policy makers and
                                                   consumers) (under development)
AIHS
Health Research Transfer Network of Alberta        Province-wide network that undertakes activities to strengthen the
                                                   flow of knowledge between researchers, practitioners, patients, and
                                                   policy makers




 37
KEY AND APPARENT STRENGTHS

Comparative Positioning
 One method of determining Alberta’s strengths in health research is to compare the province with
 other jurisdictions. A detailed review of other provinces or countries was beyond the scope of this
 project. However, limited data were available from information sourced as part of the project. These
 are described below in order of Alberta’s strengths:

  •   Alberta led Canada in the number of Immunology papers published between 1982 and 2005,
      and consistently ranked second over Ontario and BC in Pharmacology & Pharmacy publications7.
      Whether it has maintained its leading position since is unknown.

  •   In 2010, Alberta was fourth in Canada in the number of managed clinical trials. This is
      commensurate with the fact that Alberta has the fourth largest population8 - thus the province
      was average within Canada.

  •   Alberta received 7.4% of Genome Canada Applied Human Health, Competition III and Science &
      Technology Platforms funding but has 10.8% of the population9. Thus, the province is punching
      below its weight in genomics. On the other hand, Alberta is home to one of Genome Canada’s
      Science and Technology Platforms, the Bioinformatics Innovation Centre (aka Integrated and
      Distributed Bioinformatics for Genome Canada) Platform in Calgary.

  •   Alberta has no health related federally funded Networks of Centres of Excellence or Centres of
      Excellence for Commercialization and Research, although it does host the National Research
      Council of Canada’s (NRC) National Institute of Nanotechnology (NINT), which receives
      approximately $12 million in NRC funding each year10.In the past, the province was home to:

  •   Canadian Obesity Network (CON) (UofA and Capital Health, 2005-2010)

  •   Canadian Bacterial Diseases Network (CBDN) (UofC, 1989-2005)

  •   Protein Engineering Network (PENCE Inc.) (UofA, 1989-2005) 11.

  •   The province held the following ranking amongst all provinces between 1991 and 2005 in the
      number of papers published in the areas of:

          -   Maternal and Child Health – 6th

          -   Mental Health and Addictions – 5th

          -   Health System Sustainability – 5th




 38
The above list of rankings mainly concentrates on basic health research. In fact, many of Alberta’s
 strengths in health research, in the opinion of the experts interviewed for this Asset Map, are in the
 areas of basic research rather than farther along the research and innovation spectrum.


Identified Strengths

   Stem Cells

   Alberta has some strength in stem cell research, particularly as concerns islet cells for diabetes.
   Research from the Alberta Diabetes Institute (ADI), has resulted in improved patient outcomes
   worldwide from ADI’s development of the Edmonton Protocol islet transplant diabetes treatment12.


   Nanotechnology

   Alberta is home to a pan-Canadian facility headquartered in Edmonton, the National Institute for
   Nanotechnology.


   Prion Research

   Alberta has significantly improved its national standing in prion research since 2005. Of the full
   scientific members of Prionet Canada, 41/91 (45%) at September 2010 were Alberta based
   researchers13. Furthermore, the province is home to three of Canada’s four Canada Research Chairs
   targeting prion disease and the only “Chair in Prion Disease”14. Alberta facilities include the Alberta
   Prion Research Institute and the Centre for Prions and Protein Folding Diseases.


   Genomics

   The comparative positioning point above suggests that Alberta is not one of the strongest provinces
   in genomics and it also lacks next generation sequencers. Nonetheless, Alberta has a large number
   of other assets for genomics research, the majority of which are essentially basic research facilities.
   This includes those areas in which Alberta has national prominence such as genotyping,
   bioinformatics and metabolomics. However, in terms of the latter, the Pan Alberta Metabolomics
   Platform (PanAMP) (which has international prominence) has become a clinical trials support unit as
   well as a basic research facility, thereby shifting its focus somewhat towards health outcomes. The
   metabolomics community at UofA has also identified novel metabolic biomarkers for asthma,
   pregnancy complications, bacterial pneumonia, and inflammatory arthritis15, although whether
   these have been developed is unknown. Furthermore, a metabolomics based company, Chenomx
   Inc., has been spun out of this university.




 39
Virology

 Virology is considered to be an area of strength for Alberta, particularly in terms of basic research.
 Two virology facilities were identified for this report: Li Ka Shing Institute of Virology (formerly
 Alberta Institute for Viral Immunology [AIVI] and Centre of Excellence in Viral Hepatitis Research)
 and the Snyder Institute of Infection, Immunity & Inflammation.


 Imaging

 Imaging is identified as an area of strength in Alberta with thirty four imaging facilities in the
 province. Dr Gino Fallone and his team at the Cross Cancer Institute are developing a new radiation
 treatment device that is expected to change cancer treatment by better targeting solid tumours and
 allowing people with abdominal cancer access to radiation16. In addition, a group at Clark H. Smith
 Brain Tumour Centre, led by Dr Garnette Sutherland, has pioneered the development of
 intraoperative MRI technology, which can be used in the operating room to dramatically improve
 the safety and success of brain tumor surgeries and other procedures that require great precision
 and accuracy17. In the cardiovascular arena, Dr Matthias Frederich developed routine protocols for
 the clinical application of Cardiovascular Magnetic Resonance (CMR), has developed novel software
 in cardiology diagnostics, and has established a spin-off company18.


 Cardiovascular Diseases

 The six cardiovascular facilities identified for this report are all closely aligned with improving health
 outcomes. For example, the Libin Cardiovascular Institute of Alberta is a provincial centre of
 excellence and has one of the largest cardiovascular magnetic resonance programs in the world19.
 The Alberta Cardiovascular & Stroke Research Centre (ABACUS) is an $18 million (M), translational
 “research hospital within a hospital”, while the Mazankowski Alberta Heart Institute provides broad-
 based patient care as well as conducting research. Libin, ABACUS, Mazankowski and VIGOUR are
 also major international centres for clinician-initiated randomized clinical trials in cardiovascular
 diseases.


 Cancer

 Alberta spends a significant amount on cancer research. Its $500M cancer research and prevention
 Legacy Fund (endowment) provides approximately $12M for cancer prevention and $13 million for
 cancer research per year. The cancer research program is matched by funding from the Alberta
 Cancer Foundation bringing the total provincial funding for research and prevention to
 approximately $40M/year. The focus on cancer research and innovation includes three
 biorepositories. However, there is concern about perceived poor returns on investment in term of
 patient outcomes.




40
Neurological Diseases and Rehabilitative Medicine

 The province is strong in neuroscience research. Facilities include the world-renowned Hotchkiss
 Brain Institute, as well as facilities at the Universities of Alberta and Lethbridge. There are at least 24
 endowed research Chairs in the neurosciences and 21 facilities that target neurological conditions.

 A number of neuroscience facilities target rehabilitation, e.g. Centre for Ambulatory Rehabilitation
 Research and Education (CARRE), Common Spinal Disorders Research Centre (CSD), Rehabilitation
 Neurosciences Research Group, SCI Alberta. Rehabilitative medicine is a major strength for the
 province and includes not just the aforementioned four facilities, but also the Institute for
 Reconstructive Sciences in Medicine (iRSM). The latter is a world leader in medical reconstructive
 sciences with an international reputation for innovation and advances in patient care and research.


 Engineering

 Engineering is considered a key strength with the province’s expertise in this field underpinning its
 strengths in nanotechnology, medical device development, and tissue bank management.

 The Schulich School of Engineering at UofC is the second largest engineering school in Canada. It
 has major research and education programs in biomedical engineering, as well as six endowed
 research Chairs in this discipline. Key facilities at Schulich identified for this Asset Map are the
 Centre for Bioengineering Research and Education (CBRE), Pharmaceutical Production Research
 Facility (PPRF), the Bone Imaging Lab and other facilities within the Mechanical and Manufacturing
 Engineering Research Laboratories, and the Advanced Micronanosystems Integration Facility (AMIF)
 and other labs within Electrical and Computer Engineering Research. CBRE has expertise in the
 genome sciences, biomechanics, bioinformatics, biomaterials, cell and tissue engineering, and
 nanotechnology20. Many of the imaging innovations described above (e.g., those by Dr Garnette
 Sutherland and Dr Matthias Frederich), as well as many other bio-engineering advances, were
 developed by CBRE scientists21. Researchers at Schulich were also instrumental in developing the
 automated storage and retrieval facility at the Canadian BioSample Repository.

 Engineering is also strong at UofA. Key facilities include the National Institute for Nanotechnology
 (NINT) and the Peter S Allen MR Research Centre (formerly In Vivo NMR), as well as laboratories
 focused on rehabilitation engineering/ biomechanics, spinal cord injury, neuroprostheses,
 cryobiology, biomaterials, nanotechnology, and tissue engineering22.




41
OPPORTUNITIES AND CHALLENGES

Opportunities and Challenges in Areas of Strength
 The description of Alberta’s strengths in health research also touches on some of the following
 challenges and opportunities.

   •   Basic Research. Many of the province’s strengths are in basic research including most of
       genomics and virology, and some stem cell, nanotechnology and prion research. A challenge for
       the researchers is to focus their research and to present their research findings in such a way
       that they can be taken up by others and applied to health improvements or population health.

   •   Neurosciences. The province has major strengths in neurological research but, except for
       research that targets rehabilitation, much of it concerns fundamental knowledge with
       translation expertise generally lacking.

   •   Cancer. There are opportunities for the cancer research within the province to better align with
       improved health outcomes.

   •   Imaging. Although imaging is strong in the province, there are still significant opportunities to
       expand the outputs towards improved health outcomes.


Other Challenges and Opportunities

   Challenges

   •   Competition among the Universities of Alberta, Calgary and Lethbridge is still evident but it was
       thought that is could be partly reduced by group grants. However, competition continues to be
       supported by other government policies such as funding competitions and student recruitment,
       as well as lack of coordination between government departments (e.g. AHW and EAE).

   •   AHRIS represents a new way of looking at health research and innovation in Alberta and involves
       a refocusing of provincial investments to translational activities as well as a top down approach
       to health research. It will be a challenge to bring all academic health researchers on board and
       shift their activities towards translation. However, there will also be opportunities for willing
       researchers to take advantage of the new funding systems.

   •   University policies for promotion and tenure focus on scientific publications and research
       funding, not on innovation and translation. This is an issue for the province in trying to shift
       attention from basic to translational research.




 42
•   The demise of Alberta Heritage Foundation for Medical Research and its replacement by AIHS,
     as well as the replacement of the Alberta Ingenuity Fund by AITF, has resulted in concerns and
     uncertainty among many researchers who do not yet understand the role of the new entities.
     On the other hand, this change also offers opportunities to those who want to move forward
     within the government’s priority research areas.

 •   Although many health research plans have been produced, there have been challenges in
     implementing them. In fact, many have remained just as plans, with no action taken. Whether
     and how AHRIS will be implemented on a practical level is unknown.

 •   The lack of major health-based industry in the province is a challenge in terms of
     commercializing ideas from Alberta’s researchers.


 Opportunities

 •   Alberta has a single healthcare system with two medical schools, two large cities, and a
     rural/urban divide that should be a hotbed for new innovations.

 •   AITF’s accelerator program has the potential for world leadership in certain areas, such as
     nanotechnology.

 •   “Group grants” from the funding agencies have been instrumental in bringing together
     researchers from different Alberta universities as collaborators and should continue.

 •   Strong government and the Boards of all major institutions involved in health research need to
     push health research collaborations. Opportunities will be acted upon only with bold vision and
     leadership.

 •   There are other opportunities to establish Innovation Platforms by encouraging collaborations
     among researchers within individual health research platforms and establishing additional
     networks among organizations. Ideas for Platform creation could also be obtained from other
     jurisdictions. For example, the European Commission supports the establishment and
     sustainability of Technology Platforms (which are essentially Innovation Platforms). These are
     led by industry and involve defining and acting upon research priorities23.

 •   Often, use of core facilities is restricted, either formally or informally, to members of the
     department that houses the core24. Yet, one of the most cost-efficient ways in improving
     Alberta’s Innovation Platforms is to broaden their user base. To this end, information about the
     facilities needs to be effectively disseminated and the services marketed. This Asset Map helps
     in the dissemination but it is up to the facilities themselves to improve their marketing and
     service offerings.




43
INNOVATION PLATFORM FACILITATORS
 There are a number of organizations and entities in place in Alberta which support the creation and/or
 development of health-related innovation platforms. These include:


AIHS Ethics and Innovation Platforms Unit
 AIHS Ethics and Innovation Platforms unit provides ethics review services for community-based
 researchers. It also assists decision-makers, researchers and health practitioners with emerging ethics
 issues related to a range of knowledge-generating projects (including research and various types of
 applied projects; e.g., quality improvement and evaluation).


Strategic Clinical Networks
 Strategic Clinical Networks (SCNs) are province-wide teams bringing together the experiences and
 expertise of health care professionals, researchers, government, communities and patients and their
 families to improve our health care system.

 Each network will focus on a different area of health with the goal to:

   •   Improve the patient experience

   •   Ensure care is available when it’s needed

   •   Put strategies in place to keep Albertan’s healthy

   •   Provide Albertans with the best health care for generations to come

 Six SCNs are underway:

   •   Addiction and Mental Health

   •   Bone and Joint Health

   •   Cancer Care

   •   Cardiovascular Health and Stroke

   •   Obesity, Diabetes and Nutrition

   •   Seniors’ Health

 Six more SCNs are scheduled to be in operation by March 2013:




 44
•   Complex Medicine (which will include the current Respiratory Clinical Network)

   •   Maternal Health

   •   Neurological Disease, ENT (ear, nose, throat) and Vision

   •   Newborn, Child and Youth Health

   •   Population Health and Health Promotion

   •   Primary Care and Chronic Disease Management


Laboratory Alberta
 Laboratory Alberta aims to take advantage of the opportunities involved in improving Alberta’s health
 care system and the province’s strengths in health research and innovation. The concept is to
 construct a single health care delivery-research infrastructure platform that:

   •   Brings together and integrates all of Alberta’s health resources, turning Alberta into a giant
       health research laboratory

   •   Provides unique opportunities for clinical, health services and population health research

   •   Links biomedical with epidemiologic and clinical data for translational research

   •   Facilitates translation of knowledge into improved health care practices and policies

   •   Attracts talented researchers and grant funding to Alberta

   •   Attracts industry investment to commercialize health research outputs

   •   Utilizes the health systems expertise to generate economic benefits for Alberta.

 It will have four linked components:

   •   A cross-sectoral provincial database housing data from the ministries of health, education,
       justice, social services, aboriginal services, industry and other relevant portfolios, in separate but
       linkable form (termed Alberta Data Haven)

   •   The Alberta Clinical trials Consortium (described elsewhere)

   •   Alberta Healthcare Improvement Inc., which will bring quality improvement innovations and
       efforts directly into the health care system to improve health outcomes and efficiencies

   •   Alberta Biobank (presumably incorporating CBSR and the province’s other biobanks)25.




 45
Campus Alberta
  Campus Alberta, a Government of Alberta initiative, offers the opportunity for the facilities at each of
  Alberta’s universities to be made available to all researchers within the province. It also aims to
  improve access to education and training through collaborations between all publicly funded post-
  secondary institutions and the apprenticeship and industry training system, thereby increasing the
  number of highly skilled people who can work in health research as well as other areas of importance
  to the province. Such collaborations allow:

    •    Flexible transfer arrangements between institutions

    •    High quality online learning offered by 15 institutions through eCampusAlberta and hands-on
         support for distance learners at over 85 northern Alberta learning sites

    •    A common industry-developed provincial curriculum that allows apprentices to take any period
         of technical training at any Alberta post-secondary institution

    •    Coordinated applications to any of Alberta's public post-secondary institutions and electronic
         transfer of academic transcripts26.


Centres for Research and Commercialization (CRC)
  The CRC program is one of AITF’s capacity building initiatives and includes two Centres that target
  health research (Table 8). CRCs consist of collaborative hubs that are fully integrated into Alberta’s
  universities, training Alberta’s top students, working with local and international industry partners,
  and providing a strong platform for Alberta’s next generation economy27.


Centres for Research and Commercialization
              Centre                                                   Description
Alberta Innovates Centre for       Includes investigators from both the Universities of Alberta and Calgary that tackle
Carbohydrate Science               ambitious, multidisciplinary research problems on carbohydrate structure and
                                   function. Research includes vaccine development, drug discovery, and synthetic
                                   biological materials, that have key medicinal and commercial applications. Works
                                   internationally with other academics, industry and government on key issues.
Alberta Innovates Centre for       Based at the UofC with an international network of academic and corporate
Integrated Biomedical Technology   partnerships. Helps develop new medical devices, therapeutic products and
(Biovantage Inc.)                  treatment delivery solutions. Specializes in biomedical engineering, particularly
                                   imaging and biosensors.




  46
Academic Health Network
 The Academic Health Network (AHN) integrates health service delivery, teaching, and research, closely
 linking medical school faculty with all healthcare providers within both affiliated hospitals and their
 broader network of care28. The core of the academic health network is the UofA Faculty of Medicine
 and Dentistry and the UofC Faculty of Medicine. The UofA is affiliated with six patient care facilities
 and has 44 research institutes, centres and groups covering all clinical areas. The UofC is affiliated
 with five patient care facilities and has 11 research institutes and centres.




 47
GLOSSARY
AAFC       Agriculture and Agri-Food Canada
AB         Alberta
AHW        Alberta Ministry of Health & Wellness
AHRIS      Alberta’s Health Research and Innovation Strategy
AHS        Alberta Health Services
AIHS       Alberta Innovates Health Solutions
AITF       Alberta Innovates Technology Futures
CBSR       Canadian BioSample Repository
CFI        Canada Foundation for Innovation
CIHR       Canadian Institutes of Health Research
CofE       Centres of Excellence
CRC        Centre for Research and Commercialization
CRC        Colorectal cancer (context distinguishes this from above use of abbreviation)
CTU        Clinical trials unit or study site
CTSU       Clinical trials support unit
DNA        Deoxyribonucleic acid
EAE        Alberta Enterprise and Advanced Education
FPLC       Fast protein liquid chromatography
GC         Gas Chromatography
HPLC       High performance liquid chromatography
IBD        Inflammatory bowel disease
IP WG      AIHS Innovation Platforms Working Group
LC         Liquid Chromatography
M          Million
MH&A       Mental Health and Addictions
MNT        Micro nanotechnology
MS         Mass spectrometry
NMR        Nuclear Magnetic Resonance
NSERC      Natural Sciences and Engineering Research Council of Canada
PC         Preclinical
RNA        Ribonucleic acid
RT-PCR     Real-time polymerase chain reaction
TCR        T-cell receptor




     48
METHODOLOGY
 NOTE: The data and information contained in this report are believed to be reliable and accurate up to
 August 31, 2011 but are not guaranteed for completeness or accuracy.


Process
 The following steps were taken to develop the first draft of the Asset Map:

 The framework for the report was supplied by Alberta’s Health Research and Innovation Strategy
 (Alberta Advanced Education and Technology, Alberta Health and Wellness; August 2010) and the new
 mandate of AIHS.

 Discussions with key personnel at AIHS helped to frame the structure of the report.

 AIHS supplied the names of key individuals within Alberta’s health research sector who have expertise
 in the province’s health research assets. Using a Discussion Guide created for this purpose, five
 experts were interviewed (listed in Appendix 7) to obtain an indication of which facilities they thought
 may be Innovation Platforms and to help identify strengths, opportunities and challenges.

   •   AIHS provided many of the major published sources used for this report including:

   •   Alberta Innovates Technology Futures. Creating Opportunity. Alberta’s Nanotechnology Asset
       Map. 2009. www.albertatechfutures.ca/nanoAlberta/AlbertaNanoAssetMap.aspx. Accessed
       August 19, 2011.

   •   Alberta Prion Institute Annual Report 2009-2010.

   •   Genome Alberta. Genomics, proteomics, metabolomics and bioinformatics research in Alberta.
       Knowledge Asset Road Map development. July 2009.

   •   Genome Alberta. Next-generation sequencing, genotyping, proteomics, metabolomics and
       bioinformatics. An Asset Road Map for Alberta. July 2010.

   •   ICT Institute. Alberta Information and Communications Technology (ICT) Atlas. Version 1.0.
       February 2007

   •   Science-Metrix. Scientific Positioning of Alberta in Health Research Specialties. July 23, 2007.
       Stéphane Mercure, Grégoire Côté, Éric Archambault.

   •   Science-Metrix. Scientometric Assessment of Alberta’s Performance in Three Research Areas.
       15 January 2007. David Campbell, Grégoire Côté.

   •   Tyrrell L, Palmer R. Alberta Health Services and Health Research Report. April 2009.



 49
•   Other publications used included:

 •   Industry Canada. Canadian Asset Map for Stem Cell and Regenerative Medicine. Summary
     www.ic.gc.ca/stemcells, accessed August 26, 2011. Full report: In press.

 •   Information on key research centres and Centres of Excellence and Commercialization was
     obtained from the aforementioned reports and updated from those centres’ websites.

 •   Additional information was obtained from searching, between August 15 and September 13:

 •   The Universities of Alberta, Calgary and Lethbridge websites for research institutes, research
     centres, research groups, and research facilities with utility in health research

 •   Alberta Health Services website for “research”

 •   Alberta Innovates websites (www.albertainnovates.ca) on research institutions

 •   The government of Alberta Advanced Education and Technology industry sector sites
     (www.advancededucation.gov.ab.ca/technology/industry.aspx)

 •   The websites of researchers who have obtained grants from the Canada Foundation for
     Innovation (CFI) (www.innovation.ca/projects/index.cfm). Note that the short time frame for
     this project did not provide the time to also search the Natural Sciences and Engineering
     Research Council of Canada (NSERC) or Canadian Institutes of Health Research (CIHR) project
     databases. CFI was chosen due to its tendency to approve infrastructure grants.

 •   Google searches for “Innovation Platforms” and similar terms; “core facilities” and similar terms;
     “Alberta health research institute”; “Alberta health research centre”; “Alberta clinical trials”;
     Alberta “tissue bank”, “biobank”, “biorepository”, “registry”; and then an assessment of the
     websites identified

 •   The Genome Canada and Networks of Centres of Excellence websites (www.genomecanada.ca;
     www.nce-rce.gc.ca)

 •   Information on Alberta’s education facilities was obtained through Google searches “Alberta
     University”, “Alberta College”, “Alberta Community College”, and then a review of the websites
     identified.

 •   Information obtained on facilities from all the aforementioned websites and reports was
     entered into a master Table (Appendix 2) and an Excel spreadsheet.

 •   The data for each relevant facility were categorized according to university/ organization, pillar,
     type and sub-type of platform, and disease area (if relevant).

 •   Analyses were conducted in Excel to determine numbers of facilities according to type and sub-
     type of platform, disease area, and university/ organization.


50
Constraints
 Although extensive internet searches were made for all Alberta’s health research platforms, it is
 probable that some were not identified through the methodology used. Furthermore, some of the
 identified platforms may only be tangentially related to health research.

 The Asset Map has a heavy reliance on website information which may not be current or provide the
 sought-for information.

 Most of the institutions included in this Asset Map have a wide range of facilities and equipment, not
 all of which can be located on their websites

 Areas in which provincial asset maps have already been developed may be more thoroughly
 inventoried in this document. For example, the fact that so many genome sciences (sometimes
 referred to as “Omics” or just “genomics”) platforms have been identified may be an artifact of the
 sources used for this Asset Map. The two Genome Alberta Asset Maps29 did a thorough job of
 identifying equipment and facilities that could be used in genomics, proteomics, metabolomics,
 transcriptomics, nutrigenomics, pharmacogenomics and metagenomics (including lipidomics)
 research. Those Asset Maps also supply detailed descriptions of the genome sciences and their use in
 understanding and managing disease.

 This Asset Map does not identify all the Clinical Trials Units or study sites (CTUs) in the province, as
 this was beyond the scope of the original project. However, any CTUs found during the searching of
 Alberta’s health research assets are included in the inventory. As Alberta had 1,866 clinical trials in
 progress at the beginning of 2010 (clintrials.gov - a US registry of clinical trials conducted around the
 world), it is clear that not all CTUs are included in this inventory.

 One way of measuring Alberta’s strengths in health research is to compare it with other jurisdictions.
 A detailed review of other provinces or countries was not possible within the timeframe for this Asset
 Map. However, limited data were available from some of the sources used.




 51
REFERENCES




 52
1
    Alberta Innovates Health Solutions Strategic Framework, 2011.
22
  Core Facilities: Maximizing the Return on Investment. www.ScienceTranslationalMedicine.org, Vol 3 Issue 95, 10
August 2011. Accessed from stm.sciencemag.org August 12, 2011.
3
 Alberta Innovates Technology Futures. Creating Opportunity. Alberta’s Nanotechnology Asset Map. 2009. p. 31.
www.albertatechfutures.ca/nanoAlberta/AlbertaNanoAssetMap.aspx. Accessed August 19, 2011.
4
    http://en.wikipedia.org/wiki/Biosafety_level#Biosafety_level_3. Accessed September 2, 2011.
5
 Industry Canada. Canadian Asset Map for Stem Cell and Regenerative Medicine. Summary www.ic.gc.ca/stemcells,
accessed August 26, 2011. Full report: In press.
6
    Innovation Platform Working Group Notes April 19, 2011.
7
 Science-Metrix. Scientific Positioning of Alberta in Health Research Specialties. July 23, 2007. Stéphane Mercure,
Grégoire Côté, Éric Archambault.
8
 Genome British Columbia. Clinical Trials and Preclinical Infrastructure Asset Map.
www.genomebc.ca/profile/publications/asset-maps/. Accessed September 9, 2011.
9
 www.genomecanada.ca accessed September 12, 2011. Population data from Genome British Columbia. Clinical
Trials and Preclinical Infrastructure Asset Map. www.genomebc.ca/profile/publications/asset-maps/. Accessed
September 9, 2011.
10
 Alberta Innovates Technology Futures. Creating Opportunity. Alberta’s Nanotechnology Asset Map. 2009. p. 31.
www.albertatechfutures.ca/nanoAlberta/AlbertaNanoAssetMap.aspx. Accessed August 19, 2011.
11
  The only federal Network of Centres of Excellence located in Alberta is Carbon Management Canada in Calgary
(focused on the oil, gas and coal sector). www.nce-rce.gc.ca/NetworksCentres-CentresReseaux/Index_eng.asp.
Accessed August 23, 2011.
12
  Industry Canada. Canadian Asset Map for Stem Cell and Regenerative Medicine. Summary www.ic.gc.ca/stemcells,
accessed August 26, 2011. Full report: In press.
13
     www.prionetcanada.ca. Accessed August 20, 2011.
14
  Frank R. Jirik, Canada Research Chair in Molecular Medicine and Transgenic Research, UofC; Christopher Power,
Canada Research Chair in Neurological Infection and Immunity, UofA; David Westaway, Canada Research Chair in
Prion Disease, UofA.www.chairs-chaires.gc.ca. Accessed September 12, 2011.
15
  Genome Alberta. Next-generation sequencing, genotyping, proteomics, metabolomics and bioinformatics. An
Asset Road Map for Alberta. July 2010.
16
  http://www.edmontonjournal.com/health/Cross+Cancer+Institute+sets+standard+treatment+abdominal+cancers
/5267957/story.html. Accessed September 8, 2011.
17
     www.ucalgary.ca/braintumourcentre/node/105. Accessed September 8, 2011.
18
     www.ucalgary.ca/bme/research/advances. Accessed September 12, 2011.
19
     www.libin.ucalgary.ca/bios/bio.php?bio=Friedrich. Accessed September 8, 2011.
20
     http://schulich.ucalgary.ca and www.ucalgary.ca/bme/research. Accessed August 26, 2011.
21
     www.ucalgary.ca/bme/research/advances. Accessed September 12, 2011.
22
     www.bme.med.ualberta.ca/Home/Research/Groups/. Accessed August 31, 2011.
23
  European Technology Platforms. http://cordis.europa.eu/technology-platforms/home_en.html. Accessed August
17, 2011.
24
 Farber GK, Weiss L. Core Facilities: Maximizing the Return on Investment. www.ScienceTranslationalMedicine.org,
Vol 3 Issue 95, 10 August 2011. Accessed from stm.sciencemag.org August 12, 2011.
25
     www.med.ualberta.ca/Library/Documents/academic_plan.pdf. Accessed August 31, 2011.
26
     www.advancededucation.gov.ab.ca/post-secondary/campusalberta.aspx. Accessed August 26, 2011.
27
  www.albertatechfutures.ca/CapacityBuildingPrograms/CapacityBuildingInitiatives/
CentresforResearchandCommercialization.aspx. Accessed August 17, 2011.
28
  Defined in Tyrrell L, Palmer R. Alberta Health Services and Health Research Report. April 2009, p. 13: An Academic
Health Centre is .. a constellation of functions and organizations committed to improving the health of patients and
populations through the integration of their roles in research, education, and patient care to produce the
knowledge and evidence base that becomes the foundation for both treating illness and improving health. The
integration involves more than the simultaneous provision of education, research and patient care. It requires the
purposeful linkage of these roles so that research develops the evidence base, patient care applies and refines the
evidence base, and education teaches evidence-based and team-based approaches to care and prevention.
29
  (1) Genome Alberta. Genomics, proteomics, metabolomics and bioinformatics research in Alberta.
Knowledge Asset Road Map development. July 2009.

(2) Genome Alberta. Next-generation sequencing, genotyping, proteomics, metabolomics and
bioinformatics. An Asset Road Map for Alberta. July 2010.

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Modified Asset Map v3

  • 1. Alberta Asset Map for Health Research Innovation Platforms
  • 3. Table of Contents Executive Summary..................................................................................................................................... 5 Introduction................................................................................................................................................. 7 AIHS Strategic Implementation Process................................................................................................... 7 Innovation Platforms............................................................................................................................... 8 Technological Platforms............................................................................................................................ 10 Genome Sciences................................................................................................................................... 10 Imaging.................................................................................................................................................. 12 Animal Models....................................................................................................................................... 14 Nanotechnology..................................................................................................................................... 15 Biosafety................................................................................................................................................ 16 Other Technological Platforms.............................................................................................................. 16 Information Based Platforms .................................................................................................................... 21 Health Informatics................................................................................................................................. 21 Bioinformatics........................................................................................................................................ 21 Patient Database/ Registries.................................................................................................................. 22 Human Resource Based Platforms ............................................................................................................ 23 Patient Based Research Platforms............................................................................................................. 27 Other Health Research Support Capabilities............................................................................................. 30 Pre-Clinical Facilities ............................................................................................................................. 30 Biorepositories ...................................................................................................................................... 30 Clinical Trials Support Units .................................................................................................................. 31 Business Support Platforms................................................................................................................... 33 Other Health Research Entities & Facilities............................................................................................... 34 Knowledge Translation.......................................................................................................................... 35 Networks............................................................................................................................................... 37 Key and Apparent Strengths ..................................................................................................................... 38 Comparative Positioning........................................................................................................................ 38 Identified Strengths............................................................................................................................... 39 Stem Cells.......................................................................................................................................... 39 Nanotechnology................................................................................................................................ 39 Prion Research................................................................................................................................... 39 Genomics........................................................................................................................................... 39 Virology.............................................................................................................................................. 40 Imaging.............................................................................................................................................. 40 Cardiovascular Diseases..................................................................................................................... 40 Cancer................................................................................................................................................ 40 3
  • 4. Neurological Diseases and Rehabilitative Medicine.......................................................................... 41 Engineering........................................................................................................................................ 41 Opportunities and Challenges................................................................................................................... 42 Opportunities and Challenges in Areas of Strength ............................................................................... 42 Other Challenges and Opportunities..................................................................................................... 42 Challenges......................................................................................................................................... 42 Opportunities.................................................................................................................................... 43 Innovation Platform Facilitators................................................................................................................ 44 AIHS Ethics and Innovation Platforms Unit............................................................................................ 44 Strategic Clinical Networks.................................................................................................................... 44 Laboratory Alberta................................................................................................................................. 45 Campus Alberta..................................................................................................................................... 46 Centres for Research and Commercialization (CRC) .............................................................................. 46 Academic Health Network..................................................................................................................... 47 Glossary..................................................................................................................................................... 48 Methodology............................................................................................................................................. 49 Process................................................................................................................................................... 49 Constraints............................................................................................................................................. 51 References................................................................................................................................................. 52 4
  • 5. EXECUTIVE SUMMARY This Asset Map inventories the platforms (organizations, systems and assets) that support health research and innovation in the province of Alberta. Through the development of this Asset Map, Alberta Innovates Health Solutions (AIHS)’ will be better able to determine the province’s greatest strengths and challenges and to determine which areas require priority focus by AIHS and its partners and stakeholders. AIHS defines Innovation Platforms as “a technological and organizational environment conducive to discovery and knowledge development that will help fuel innovation.” An Innovation Platform is more than just infrastructure, it is a roadmap for innovation, an approach that: • drives technological, scientific and conceptual innovation to advance research in health • leverages a variety of competencies and assets (including those of partners) • cuts across traditional organizational boundaries to capture province-wide opportunities and enable seamless handoffs of ideas and projects across the discovery to application research spectrum • integrates “technology push” and “market pull” to drive technically actionable and meaningful innovations Within this Asset Map, Innovation Platforms are categorized in tables as • technological platforms • information based platforms • human resource based platforms • patient-based research platforms • other health research support capabilities • other health research organizations Provincial strengths were identified in several areas of basic research, such as virology, prion research, genotyping, and bioinformatics (but, except for metabolomics, no other areas of genomics). Basic research strengths that have led to some translational successes include metabolomics, nanotechnology, neuroscience, and stemcells. Other strengths in include: • imaging • rehabilitative medicine, including neurological subspecialties and reconstructive sciences 5
  • 6. cardiovascular research • bioengineering, with the province’s expertise in this field underpinning its strengths in nanotechnology, medical device development, and tissue bank management. There are a number of organizations which will help facilitate the province’s new approach to health research and innovation including: • AIHS Ethics and Innovation Platforms Unit • Strategic Clinical Networks • Laboratory Alberta • Campus Alberta • Academic Health Network • Centres for Research and Commercialization (CRC) 6
  • 7. INTRODUCTION Alberta Innovates Health Solutions (AIHS)’ mission is to work with partners and stakeholders to design, develop, deliver and evaluate programs, services, and initiatives to help achieve focus and excellence in innovation and health research, and provide solutions to health sector problems. The result will be a robust health-research-based economy in Alberta. To succeed in fulfilling this mission, AIHS uses the following strategies: • Support Discovery: AIHS will support excellence in innovation and health-related research in defined areas of strategic focus. • Stimulate Application: AIHS will collaborate with the research community, the private sector, and the health care community to meet, through research and innovation, their priority needs and challenges. AIHS will also facilitate the translation of research findings into an efficient and effective health system (or a business advantage).1 AIHS’ partners and stakeholders include: • Alberta Enterprise and Advanced Education (EAE) • Alberta Health and Wellness (AHW) • Alberta Innovates corporations (AI) • Alberta Health Services (AHS) • Post-secondary institutions • Research organizations and funders AIHS Strategic Implementation Process In 2010, the Government of Alberta released Alberta’s Health Research and Innovation Strategy (AHRIS) which sets provincial health research priorities for ten years. AHRIS creates common aims for the health system and the health research and innovation system. These aims focus on three high- level strategic priorities: • Wellness at Every Age—improved health outcomes for Albertans • Innovative Health Service Delivery—a more accessible and responsive health care system • Enhanced Socio-Economic Outcomes—diversified opportunities that benefit Alberta’s economy 7
  • 8. The Government expects that the many organizations, entities, and individuals who make up the research and innovation system in Alberta will move over time to focus their research investments and attention on meeting these priorities. In 2011, AIHS initiated a Strategic Implementation Process designed to elicit stakeholder input into the organization’s strategic direction and program implementation. The priorities and areas of strategic focus described in AHRIS were used as a framework for the Process and the creation of Working Groups, including an Innovation Platforms Working Group. To facilitate their discussions, the Innovation Platforms Working Group requested an Asset Map of the Innovation Platforms in Alberta. The first version of this document was released in September 2011. This Asset Map provides a snapshot of Alberta’s health research assets including its strengths, opportunities, and challenges. The Asset Map has been updated in order to ensure that the document reflects the evolution of AIHS’ strategic and operational direction since creation of the first draft and to provide AIHS’ broad stakeholder community an opportunity to ensure the accuracy of the innovation platforms considered within the document. Innovation Platforms The IP Working Group adopted the AHRIS definition of Innovation Platforms as “a technological and organizational environment conducive to discovery and knowledge development that will help fuel innovation.” The Working Group expanded the definition to include the concept that an Innovation Platform is more than just infrastructure, it is a roadmap for innovation, an approach that: • drives technological, scientific and conceptual innovation to advance research in health • leverages a variety of competencies and assets (including those of partners) • cuts across traditional organizational boundaries to capture province-wide opportunities and enable seamless handoffs of ideas and projects across the discovery to application research spectrum • integrates “technology push” and “market pull” to drive technically actionable and meaningful innovations Within this Asset Map, the health research innovation platforms are categorized as • technological platforms, e.g., those related to the genome sciences, imaging, animal models, nanotechnology, biosafety, other technology • information based platforms, e.g., bioinformatics, health informatics, information technology, patient data registries 8
  • 9. human resource based platforms, e.g., training facilities and courses • patient-based research platforms which involves patients e.g., clinical trials, patient management, service delivery • other health research support capabilities, e.g., pre-clinical facilities, biorepositories/ tissue banks, clinical trials support, business support • other health research organizations, e.g., health research facilities conducting numerous activities, those specializing in knowledge transfer, networks. Each of these categories include core facilities (often innovation platforms themselves) which are accessible by the broader community and include personnel, equipment, information technology, buildings, etc. They contain sophisticated instruments/ technologies and staff with expertise in: • operating the instruments or harnessing the technologies • interpreting the data (informatics and biostatistics) • providing consultation on how best to use the resources to address distinct research questions. The availability of core facilities generally results in improved research efficiency and productivity, as individual researchers are not trained in the techniques being offered and do not have to learn them2. 9
  • 10. TECHNOLOGICAL PLATFORMS Technological Platforms include those related to: • genome sciences • imaging • animal models • nanotechnology • biosafety • other technological areas, e.g. stem cell facilities, other cell processing facilities Genome Sciences • Most of the genomics equipment in Alberta is utilized in genotyping, proteomics and metabolomics. • The sole next generation sequencer in Alberta, an important instrument for today’s genome sequencing projects, is housed at the Alberta Ingenuity Centre for Livestock Genomics Technology (aka Alberta Bovine Genomics Program) at UofA. This facility focuses on agricultural genomics; but, the equipment could be utilized in health research. This is also true for other equipment within agricultural genomics facilities. • Conventional sequencers are found at the University Core DNA Services at UofC and the Applied Genomics Centre at UofA. • At least six of the genomics platforms have a strong bioinformatics component or specialize in bioinformatics. Genomics Technology Facility Affiliation Agriculture Genomics and Proteomics Unit UofA Alberta Ingenuity Centre for Livestock Genomics Technology (Alberta Bovine Genomics Program) UofA Alberta Transplant Applied Genomics Centre (ATAGC) UofA Applied Genomics Centre UofA Centre of Excellence in Gastrointestinal Inflammation & Immunity Research (CEGIIR) UofA Institute for Biomolecular Design (IBD) (incorporates the former Alberta Peptide Institute) UofA
  • 11. Facility Affiliation Mass Spectrometry Facility UofA Microarray and Proteomics Facility UofA National High Field Nuclear Magnetic Resonance Centre (NANUC) UofA Pan Alberta Metabolomics Platform (PanAMP) UofA Signal Transduction Group UofA University of Alberta (Other Labs) - 11 additional facilities UofA Bioinformatics Innovation Centre (formerly Integrated and Distributed Bioinformatics Platform for UofC Genome Canada) Bio-NMR Center UofC Chemical Instrumentation Facility UofC Clara Christie Centre for Mouse Genomics (CMG) UofC Institute for Biocomplexity and Informatics UofC Snyder Institute of Infection, Immunity & Inflammation UofC Southern Alberta Cancer Research Institute (SACRI) UofC Southern Alberta Mass Spectrometry Centre for Proteomics (SAMS) UofC Southern Alberta Microarray Facility (SAMF) UofC Sun Centre of Excellence for Visual Genomics (COE) UofC University Core DNA (UCDNA) Services UofC University of Calgary (Other Labs) - 3 additional facilities UofC Nuclear Magnetic Resonance (NMR) Center UofL University of Lethbridge (Other Labs) - 2 additional facilities UofL Autism Research Centre, AHS AHS (Glenrose) Genomics Platforms with Major Bioinformatics Capabilities Platform Affiliation Bioinformatics Innovation Centre (formerly Integrated and Distributed Bioinformatics Platform for UofC Genome Canada) Bio-NMR Center UofC Centre of Excellence in Gastrointestinal Inflammation & Immunity Research (CEGIIR) IP UofA Institute for Biocomplexity and Informatics UofC Pan Alberta Metabolomics Platform (PanAMP) UofA Sun Centre of Excellence for Visual Genomics (COE) UofC 11
  • 12. Imaging Imaging for health research includes: • magnetic resonance imaging (MRI) • functional MRI • x-rays • computed tomography (CT; includes SPECT [single-photon emission computed tomography]) • positron emission tomography (PET) • electron microscopy • image processing. There are a number of facilities in Alberta with strong capabilities in imaging people, animals, cells and materials. Six facilities of these facilities specialize almost exclusively in imaging: • Bio-imaging Facility, University of Lethbridge • Cell Imaging Centre, University of Alberta • Quantitative Imaging Centre, University of Alberta – the Centre’s primary focus is petroleum recovery and advanced materials, but it can also be used for health related applications • Bone Imaging Laboratory, University of Calgary • Microscopy and Imaging Facility, University of Calgary • Seaman Family MR Research Centre, University of Calgary NOTE: Although all the groups listed in the table below used imaging in their research, some of the groups may not use imaging equipment located in their own research facility. Imaging Facilities Facility Affiliation Alberta Cardiovascular & Stroke Research Centre (ABACUS) (Alberta University Hospital) UofA Alberta Centre for Surface Engineering and Science (ACSES) UofA Alberta Transplant Applied Genomics Centre (ATAGC) UofA Bebensee Schizophrenia Research Unit UofA Cardiovascular Research Centre UofA Cell Imaging Centre UofA 12
  • 13. Facility Affiliation Computational Memory Lab UofA Cross Cancer Institute (UofA/ AHS) UofA Department of Cell Biology, University of Alberta UofA Depression and Stress Disorder Research Group UofA Immunology Network (ImmuNet) UofA Li Ka Shing Institute of Virology (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of UofA Excellence in Viral Hepatitis Research) National Institute for Nanotechnology (NINT) UofA Neurochemical Research Unit (NRU) UofA Peter S. Allen MR Research Centre (formerly In Vivo NMR) UofA Pharmaceutical Orthopaedic Research Lab. (PORL) UofA Quantitative Imaging Centre UofA Surgical Medical Research Institute (SMRI) UofA University of Alberta (Other Labs) – 4 labs (Begg, Jhamandas, Uludag, Zemp) UofA Women & Children's Health Research Institute (WCHRI) UofA Advanced Micro/nanosystems Integration Facility (AMIF) UofC Alberta Innovates Centre for Integrated Biomedical Technology (Biovantage Inc.) UofC Bone Imaging Laboratory UofC Libin Cardiovascular Institute of Alberta (LCIA) UofC Mental Health Centre for Education and Research (MHCER) UofC Microscopy and Imaging Facility UofC Seaman Family MR Research Centre UofC Snyder Institute of Infection, Immunity & Inflammation UofC Southern Alberta Cancer Research Institute (SACRI) UofC Bio-imaging Facility UofL Canadian Centre for Behavioural Neuroscience UofL 13
  • 14. Animal Models The following facilities develop animal models for use in health research. These models range from transgenic mice and zebra fish to mouse and catfish immunological models. Animal Models Developed for Health Research Facility Animal Models Affiliation Centre of Excellence in “Animal disease models” UofA Gastrointestinal Inflammation & Immunity Research (CEGIIR) Pulmonary Research Group (PRG) Murine model of ovalbumin induced airway UofA hyperresponsiveness and inflammation Surgical Medical Research Institute Transgenic mice UofA (SMRI) University of Alberta (Other Labs) Allison Lab has transgenic zebra fish UofA Baldwin Lab has developed a TCR transgenic mouse model Michalak Lab has transgenic mice Stafford Lab has developed a channel catfish immunological model Alberta Children's Hospital Research Transgenic mice UofC Institute for Child and Maternal Health Clara Christie Centre for Mouse “Tools to effectively generate and study transgenic mice” UofC Genomics (CMG) Embryonic Stem Cell (ESC) Facility Development of animal models via targeted mutagenesis; UofC animal injury models Snyder Institute of Infection, Immunity Mouse phenomics facilities, including transgenic mice UofC & Inflammation Southern Alberta Cancer Research Transgenic mouse facility UofC Institute (SACRI) University of Calgary (Other Labs) Child Lab developing developing new transgenic lines of zebra UofC fish for visualizing vascular development Cross Lab has transgenic mice Kubes Lab has established an in vivo septic transgenic mouse model (to elucidate the biological responses to sepsis). 14
  • 15. Nanotechnology Nanotechnology (nanotech) has utility in electronics, materials construction, machinery and tools, pharmaceuticals, and health care. Nanotech can be applied to pharmaceuticals and health care for: • miniaturized diagnostic implants (for early diagnosis and monitoring of illnesses) • nanoscale coatings to improve the bioactivity and biocompatibility of implants • ultra-precise drug delivery systems • sensors for Lab-on-a-Chip • bone and tissue regeneration. According to Government of Alberta’s 2009 Nanotechnology Asset Map3, seven facilities are applying nanotechnologies to health research, including a pan-Canadian facility headquartered in Edmonton, the National Institute for Nanotechnology. Nanotechnology Facility Affiliation Advanced Micro/nanosystems Integration Facility (AMIF) UofC Alberta Centre for Advanced MNT Products (ACAMP) UofC & UofA Alberta Centre for Surface Engineering and Science (ACSES) UofA Integrated Nanosystems Research Facility (formerly Centre of Excellence in Integrated NanoTools UofA [CEIN]) Micro and Nanofabrication Facility (NanoFab) UofA National High Field Nuclear Magnetic Resonance Centre (NANUC) UofA National Institute for Nanotechnology (NINT) IP UofA 15
  • 16. Biosafety Biosafety Level 2 and 3 (BSL-2, BSL-3) facilities exist at five locations in Alberta. BSL-2 facilities are suitable for work involving agents that pose moderate hazards to personnel and the environment, while BSL-3 facilities allow research on agents that may cause serious or potentially lethal diseases but for which treatments exist, e.g., human immunodeficiency virus [HIV], West Nile Virus4. Biosafety Facilities Facility BSL Facility Affiliation Centre for Prions and Protein Folding “Areas with analytical instrumentation are designated for UofA Diseases biocontainment use” Centre of Excellence in Gastrointestinal BSL-3 laboratory to isolate, characterize and formulate UofA Inflammation & Immunity Research diagnostic tests for the human betaretrovirus (CEGIIR) Li Ka Shing Institute of Virology BSL-2 and BSL-3- animal biocontainment suites UofA (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of Excellence in Viral Hepatitis Research) Pharmaceutical Production Research BSL-2 tissue culture UofC Facility (PPRF) University of Calgary (in association BSL-2 laboratory space UofC with the Alberta Prion Research Institute) Other Technological Platforms Other health research technological platforms include those related to: • biochemistry • chromatography • flow cytometry and cell sorting • histochemistry • histopathology • microbiology • spectrophotometry 16
  • 17. Much of the equipment related to this research such as spectrometers, gas and liquid chromatography (GC and LC), microscopes, etc. can be found in many other laboratories in Alberta’s universities and colleges that were not identified for this report. Other Technological Platforms Facility/ Affiliation Equipment/ Expertise Affiliation Alberta Diabetes Institute (ADI) Stem cell facility UofA Alberta Innovates Centre for Carbohydrate library screening capabilities; advanced electrospray UofA Carbohydrate Science (AICCS) ionization mass spectrometry (ESI-MS) instrumentation; X-ray crystallography; cell engineering Biological and Medicinal Chemistry Biomolecular design, peptide array synthesis UofA Laboratory (BMCL) Centre for Prions and Protein “Communal areas with analytical instrumentation”, biochemistry UofA Folding Diseases wet-lab activity, histopathology Centre of Excellence in Tissue storage and processing, molecular biology (FPLC, HPLC), UofA Gastrointestinal Inflammation & endoscopy, in vitro models Immunity Research (CEGIIR) Department of Chemistry, (i) Analytical and Instrumentation Lab - spectrophotometers, UofA University of Alberta spectrometers, microscopes, GC, HPLC-MS, etc. (ii) Biological Services Lab– gel electrophoresis; cell sorting, collecting and other cell chemistry equipment; etc. (iii) X-ray Crystallography Lab Faculty of Physical Education and Numerous pieces of equipment to measure human movement UofA Recreation capture and analysis Flow Cytometry Facility Flow cytometry, cell sorting, data analysis UofA Immunology Network (ImmuNet) Biophysical research (BIAcore technology, multi-angle static and UofA quasi-elastic light scattering detector), cell sorting Institute for Biomolecular Design Amino acid analysis, peptide synthesis UofA (IBD) (incorporates the former Alberta Peptide Institute) Institute for Reconstructive Anechoic chamber facility; equipment to facilitate assessment of UofA Sciences in Medicine (iRSM), UofA/ jaw function; advanced digital technologies, virtual reality and solid AHS biomodeling for medical modeling research; biomechanical engineering Li Ka Shing Institute of Virology Cell sorting and other core facilities (not specified) UofA (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of Excellence in Viral Hepatitis Research) Lipid and Lipid Metabolite Analysis FDLC lipoprotein profiling, separation, and purification UofA Core Facility Mass Spectrometry Facility 11 mass specs applied to other research areas as well as genomics UofA Membrane Protein Research Group DNA and protein manipulations, UV /visual spectrophotometers, UofA spectrofluorimeters, HPLC, liquid scintillation counting, electron 17
  • 18. Facility/ Affiliation Equipment/ Expertise Affiliation paramagnetic resonance Molecular and Cell Biology of Lipids High performance liquid chromatography (HPLC), fast protein liquid UofA chromatography (FPLC), gas chromatography Muttart Diabetes Research & Core laboratory facilities (not specified). UofA Training Centre Signal Transduction Group (STRG) Biochemistry, cell biology UofA Surgical Medical Research Institute Rooms for operating on large and small animals; biochemistry and UofA (SMRI) histology laboratory UofA (Other Labs) Elliott Lab has cryobiology facilities UofA Glerum Lab has microfluidic chip-based assays for use in studying mitochondrial disease Holt Lab has spectrophotometer, cell fermenter and purifier, chromatographs, other Jhamandas Lab has equipment for immunohistochemistry, in situ hybridization, single cell RT-PCR, electrophysiology Jurasz Lab has equipment for platelet aggregometry, flow cytometry, microscopy, immunoblot, zymography, PCR, and in vitro angiogenesis and endothelial cell migration assays Martin Lab and Environmental Health Sciences Lab has chromatographic systems, mass spectrometry, bioanalytical instruments including PCR and microarray and other equipment Michalak Lab has various stem cell lines Sipione Lab has cell culture, biochemistry and molecular biology facilities Spyracopoulos Lab has NMR spectrometers, UV/ visible spectrometer, FPLC Uludag Lab has facilities to synthesize and characterize small organic molecules and polymeric materials, gel electrophoresis, fluorescent microscope, thermocyclers, HPLC systems, flow cytometer Women & Children's Health Electrophysiology, molecular biology, stem cell research and UofA Research Institute (WCHRI) physiological measurement labs, animal facilities Alberta Children's Hospital Stem cell facility, cell and tissue culture Research Institute for Child and UofC Maternal Health Alberta Innovates Centre for Biosensors, tissue characterization Integrated Biomedical Technology UofC (Biovantage Inc.) IP Biomedical Technical Support Electronic and mechanical UofC Centre Centre for Advanced Technologies Histopathology (veterinary medicine but may have utility in human UofC in the Life Sciences (CAT) health research) 18
  • 19. Facility/ Affiliation Equipment/ Expertise Affiliation Centre for Bioengineering Research Numerous bioengineering facilities including those for tissue and UofC and Education (CBRE) cellular engineering Chemical Instrumentation Facility UV / visible spectrophotometers, EPR spectrometer, circular UofC dichroism / polarimeter, elemental analyzer Clara Christie Centre for Mouse Embyronic stem cell /targeted mutagenesis, 3D morphometrics. UofC Genomics (CMG) Clark H. Smith Brain Tumour Centre Brain tumor stem cell core UofC IP Department of Chemistry, Includes the following facilities: (i) Chemistry instrumentation University of Calgary facility (see above); (ii) X-ray crystallography service; (iii) Electronics UofC shop; (iv) High performance computing cluster; (v) Science workshop with various machine tools. Embryonic Stem Cell (ESC) Facility Bioreactors, equipment for the expansion and differentiation of UofC embryonic stem cells Hotchkiss Brain Institute Stem cells UofC Pharmaceutical Production Pharmaceutical scale-up, modeling cell behaviour; development of Research Facility (PPRF) bioreactor related technologies, tissue-derived and embryonic stem UofC cells; large-scale tissue culture and bioreactor facilities Snyder Institute of Infection, Flow cytometer, cell sorter, anaerobic chamber Immunity & Inflammation Southern Alberta Cancer Research Peptide synthesis facility, flow cytometry facility, mouse embryonic Institute (SACRI) stem cell facility; hybridoma and antibodies, fluorescence activated cell sorting, cell and embryo culture, animal surgery, histology, in UofC situ hybridization, immunofluorescence, near infrared protein/DNA imaging and FPLC UofC (Other Labs) DeVinney Lab has the infrastructure for cell biology, including microscopes, tissue culture Dobrinski lab has facilities for stem cell research UofC Thompson Lab has in vivo microscopy and real-time quantitative PCR infrastructure to investigate neurodegenerative disorders Canadian Centre for Behavioural Equipment for fluorescence, confocal, quantitative video- and Neuroscience computer-based behaviour analysis methods, dense array UofL electroencephalography, in vivo electrophysiology, immunocytochemistry Department of Chemistry & Includes the following equipment: NMR spectrometers; X-ray Biochemistry, University of diffractometers; infrared spectrometers; fluorescence, UV-visible, Lethbridge surface plasmon resonance, and raman spectrophotometers; high- UofL performance computing facility; GC and HPLC; calorimeters; high temperature and pressure densimeter; protein solutions dynamic light scattering device Nuclear Magnetic Resonance NMR spectrometers with utility in research other than UofL (NMR) Center metabolomics University of Lethbridge (Other Wieden Lab has equipment for enzyme kinetics, molecular biology, UofL 19
  • 20. Facility/ Affiliation Equipment/ Expertise Affiliation Labs) bacterial cell culture, protein and RNA purification Calgary Laboratory Services, AHS Laboratory testing, including pathology/cytopathology, AHS biochemistry, hematology, microbiology Department of Chemistry, Kings Spectrophotometers, spectrometers, GC, GC-MS Kings University College University College NuRx, AITF Chemical, biochemical or fermentation technologies; can help isolate bioactive ingredients, synthesize compounds, or develop and AITF scale-up processes. Olds College School of Innovation, Pilot plant and microprocessing facilities for the processing of Olds Olds biolubricants and bioproducts. College 20
  • 21. INFORMATION BASED PLATFORMS Information-based platforms include those related to: • health informatics – a discipline at the intersection of information science, computer science and health care which generally refers to the management of patient or health information • bioinformatics – a discipline at the intersection of information science, computer science and biological research data • patient databases/registries – research access to anonymized health data and patient information, often related to a specific disease type. Health Informatics Health informatics is a discipline at the intersection of information science, computer science, and health care (as opposed to bioinformatics which is at the intersection of science, computer science and biological research data). Health informatics generally refers to the management of patient or health information. Health Informatics Facility/ Affiliation Affiliation Alberta Cardiovascular & Stroke Research Centre (ABACUS), Alberta University Hospital UofA Alberta Centre for Injury Control and Research UofA Alberta Dialysis Databank UofA Alberta Innovates Centre for Machine Learning UofA Alberta Research Centre for Health Evidence (previously Alberta Research Centre for Child Health UofA Evidence) Centre for Health Evidence (CHE) UofA Alberta Health Services Division of Population Health, Tom Baker Cancer Centre UofA Calgary Centre for Clinical Research (CCCR) UofC Health Innovation & Information Technology Centre (HiiTeC) (previously Health Telematics Unit and UofC Telehealth/e-Health Research & Training Program) Libin Cardiovascular Institute of Alberta (LCIA) UofC Alberta IBD Consortium UofA & UofC Alberta Centre for Child, Family and Community Research (ACCFCR), AHS AHS Alberta Health Services (AHS) Office of Surgical Research, AHS AHS Institute of Health Economics (IHE), Edmonton IHE Bioinformatics 21
  • 22. Bioinformatics is the intersection between information science, computer science and biological research data. The first six bioinformatics facilities listed in the table below were included as part of the inventory of genomics platforms in the previous section. The seventh facility, the Flow Cytometry Facility at UofA, analyzes data from flow cytometry and cell sorting. Bioinformatics Capabilities Facility Affiliation Bioinformatics Innovation Centre (formerly Integrated and Distributed Bioinformatics Platform for UofC Genome Canada) Bio-NMR Center UofC Centre of Excellence in Gastrointestinal Inflammation & Immunity Research (CEGIIR) IP UofA Institute for Biocomplexity and Informatics UofC Pan Alberta Metabolomics Platform (PanAMP) UofA Sun Centre of Excellence for Visual Genomics (COE) UofC Flow Cytometry Facility UofA Patient Database/ Registries Patient databases and registries contain health data and patient information which has been anonymized in order to allow researcher access. The information often relates to a specific disease type. Patient Registries Registry Affiliation Child and Youth Data Laboratory, Alberta Centre for Child, Family and Community Research (ACCFCR) AHS Alberta Dialysis Databank UofA Alberta IBD Consortium UofA & C Alberta NETCARE AHS Alberta Trauma Registry AHS Clark H. Smith Brain Tumour Centre UofC Wilson Disease Mutation Database UofA 22
  • 23. HUMAN RESOURCE BASED PLATFORMS All health research involves training of some kind, from skills in basic science techniques to patient management but the health research entities listed below identify specific training facilities. Human Resource Based Platforms Facility Training Affiliation Agriculture Genomics and Proteomics Provides training for performing genomic and proteomic UofA Unit experiments, serves as a teaching facility for graduate courses Alberta Institute for Human Nutrition Offers “opportunities for multidisciplinary and UofA interdisciplinary education” Centre for Ambulatory Rehabilitation Hands-on teaching site for rehabilitation students and UofA Research and Education (CARRE) IP continuing education for practicing clinicians Centre for Health Evidence (CHE) Supports the teaching of evidence-based health care and UofA provides a number of educational services Centre for Health Promotion Studies Interdisciplinary graduate programs UofA Centre for Neuroscience Focused on administering a graduate program, an UofA undergraduate honors program and a seminar program Centre for the Advancement of Minimally Provides a centralized training site for residents and UofA Invasive Surgery (MIS) (CAMIS), Royal professional development in MIS techniques for surgeons Alexandra Hospital and allied health professionals Complementary & Alternative Research Create a supportive and collaborative environment that UofA & Education (CARE) fosters learning, at all health care provider levels about CAM therapies, products Department of Public Health Sciences Graduate programs on health policy and management, UofA health technology assessment, epidemiology and biostatistics, environmental health and global health Faculty of Physical Education and Physical education and recreation faculty with numerous UofA Recreation courses and programs Immunology Network (ImmuNet) Various educational and networking events, including UofA seminars and a one day retreat Institute for Continuing Care Education Participates in innovative education programs UofA, AHS, and Research (ICCER), with AHS, others others Institute for Stuttering Treatment and Offers advanced professional training for speech-language UofA Research (ISTAR) pathology students and clinicians International Institute for Qualitative Offers a wide variety of training opportunities through UofA Methodology (IIQM) annual conferences, courses, and workshops John Dossetor Health Ethics Centre Hosts health ethics seminar series, a symposium, and UofA workshops. Offers graduate courses in healthcare ethics, research ethics, public health ethics, law and policy Membrane Protein Research Group Trainee program in the area of structure and function of UofA 23
  • 24. Facility Training Affiliation membrane proteins Microarray and Proteomics Facility Teaching facility for graduate and undergraduate courses UofA Muttart Diabetes Research & Training Trains students interested in diabetes-related research UofA Centre IP National High Field Nuclear Magnetic NMR scientific training, operator training, technical training UofA Resonance Centre (NANUC) Rehabilitation Research Centre (RRC) Offers seminars and workshops on research methodology UofA to faculty, students and clinicians. Develops materials for use in teaching research methods, ethics, and a variety of related topics Surgical Medical Research Institute Provides major teaching facilities for surgical residents in UofA (SMRI) training and for core training (surgical skills) for postgraduate Year 1 & Year 2, graduate, and summer students. Also Continuing Medical Education courses Centre for Bioengineering Research and Responsible for delivering the undergraduate specialization UofC Education (CBRE) in bioengineering in the Schulich School of Engineering Health Innovation & Information Works closely with the department of Community Health UofC Technology Centre (HiiTeC) (previously Sciences and the Medical Ward of the 21st Health Telematics Unit and Telehealth/e- Century to operate training programs that leverage Health Research & Training Program) information technologies and the HiiTeC computing platforms Libin Cardiovascular Institute of Alberta Coordinates all cardiovascular education within both AHS UofC (LCIA) IP (Calgary) and UofC. Microscopy and Imaging Facility Holds workshops and practical courses in microscopy and UofC image processing Ward of the 21st Century IP (with AHS) Medical teaching unit at the Foothills Medical Centre UofC & AHS Banff International Research Station for Educational programs and workshops Banff Centre Mathematical Innovation and Discovery (BIRS) IP, c/o The Banff Centre Bio-imaging Facility, UofA Large teaching component, including Ultrastructure Online, UofA an internet-based interactive learning tool designed to assist students in the study of cell structure and function. In addition, the Universities of Alberta, Calgary and Lethbridge offer numerous relevant courses. For example: • Tyrell & Palmer highlighted training strengths at UofA in primary care and First Nations population health research. • The Nanotechnology Asset Map described hands-on training at UofA Faculty of Engineering in Nanoscale System Design (Computer Engineering), Nanoengineering (Electrical Engineering and Engineering Physics) and Nano and Functional Materials (Materials Engineering). An undergraduate degree with a minor or concentration in Nanoscience is offered at UofC. 24
  • 25. AITF manages a $3 million per year scholarship program for graduate students in nanotechnology fields at Alberta universities. • AIHS offers similar graduate student support programs. As well as the training offered by the Universities of Alberta, Calgary, and Lethbridge, 14 other educational institutions in the province offer potentially relevant training. In addition, 11 of Alberta’s institutions offer nursing courses. Educational Institutions Offering Courses With Utility in Health Research Educational Institution URL Key Information Alberta College of Medical http://acmlt.org/ Lab technician courses Laboratory Technologists Grand Prairie Regional College www.gprc.ab.ca Centre for Research and Innovation Grant MacEwan University www.macewan.ca Various biological and healthcare courses Concordia University College of www.concordia.ab.ca Postgraduate public health course Alberta Athabasca University www.athabascau.ca Centre for Nursing and Health Studies conducts research on health behaviour. It also offers an MSc in Health Studies that provides competency in health policy, evaluation and planning Kings University College www.kingsu.ca Three potentially relevant science degrees DeVry Institute of Technology www.devry.ca Degree course in Computer Engineering Technology Keyano College http://keyano.ca/ University transfer programs in various relevant topics Medicine Hat College www.mhc.ab.ca/ University transfer programs in various relevant topics Mount Royal University www.mtroyal.ca Various biological and healthcare degrees Northern Alberta Institute of www.nait.ca Programs in: biological sciences technology, Technology (NAIT) biomedical engineering technology, cytotechnology, magnetic resonance, medical laboratory technology, medical radiologic technology, nanotechnology systems NorQuest College www.norquest.ca Home to the Centre for Excellence in Continuing Care Olds College www.oldscollege.ca Conducts research in nutraceuticals, functional foods. Red Deer College www.rdc.ab.ca Medical Laboratory Assistant program Southern Alberta Institute of www.sait.ca Offers courses in health information management, Technology (SAIT) medical laboratory technology, medical radiologic technology, nuclear medicine technology University of Alberta www.ualberta.ca Has over 5000 health science students in 14 disciplines across 8 health science faculties, including one of the most research intensive Faculties of 25
  • 26. Educational Institution URL Key Information Nursing in Canada. Has a medical school and biomedical engineering capabilities. University of Calgary www.ucalgary.ca; Numerous departments within 6 health science http://contacts.ucalgary. faculties. Has a medical school and biomedical ca/directory/faculties engineering capabilities. University of Lethbridge www.uleth.ca/faculties- 10 relevant departments within the Faculty of Arts schools and Science. 26
  • 27. PATIENT BASED RESEARCH PLATFORMS Patient based research platforms include all facilities that interact with patients. These include centres that conduct clinical trials or use humans as experimental subjects in their research. Clinical trials can include: • comparative drug based studies • comparative evaluation of new devices • new patient management models (e.g., hip and knee replacement health service model). Many of the facilities that conduct clinical trials also conduct other activities (e.g., patient management), although not all activities are patient based (e.g. basic research). NOTE: This Asset Map does not identify all the Clinical Trials Units or study sites (CTUs) in the province, as this was beyond the scope of the original project. However, any CTUs found during the searching of Alberta’s health research assets are included in the table below. As Alberta had 1,866 clinical trials in progress at the beginning of 2010 (clintrials.gov - a US registry of clinical trials conducted around the world), it is clear that not all CTUs are included in this inventory. Patient Based Research Platforms Facility Description Affiliation Alberta Asthma Centre (including Pulmonary Conducts clinical trials, patient management and UofA Research Group) population level research Alberta Bone and Joint Health Institute Conducts clinical trials UofC & AHS (includes McCaig Institute for Bone & Joint Health) Alberta Cardiovascular & Stroke Research Conducts clinical trials UofA (Alberta Centre (ABACUS) University Hospital) Alberta Centre for Child, Family and Patient research for public policy and service delivery AHS Community Research (ACCFCR) Alberta Children's Hospital Research Conducts clinical trials UofC Institute for Child and Maternal Health (previously known as Institute of Child and Maternal Health [ICMH]) Alberta IBD Consortium Collect patient data for population level research UofA & UofC Alberta NETCARE Collects patient health data for use by health providers AHS and researchers Aleksandar Kostov Assistive Technology Conducts clinical trials UofA & AHS Research Lab (Glenrose) 27
  • 28. Facility Description Affiliation Autism Research Centre Patient research subjects but seemingly no clinical UofA & AHS trials (Glenrose) Bebensee Schizophrenia Research Unit Patient research subjects but seemingly no clinical UofA trials Bone Imaging Laboratory Conducts clinical trials UofC Canadian Centre for Behavioural Patient research subjects but seemingly no clinical UofA Neuroscience trials Centre for the Advancement of Minimally Patient research subjects but seemingly no clinical UofA & AHS Invasive Surgery (CAMIS) trials (Royal Alex Hospital) Centre for Ambulatory Rehabilitation Conducts clinical trials UofA Research and Education (CARRE) Centre of Excellence in Gastrointestinal Conducts clinical trials UofA Inflammation & Immunity Research (CEGIIR) Clark H. Smith Brain Tumour Centre Conducts clinical trials UofC (SACRI) Common Spinal Disorders Research Centre Conducts clinical trials UofA (CSD) Complementary & Alternative Research & Conducts clinical trials UofA Education (CARE) Cross Cancer Institute Conducts clinical trials UofA Epidemiology Coordinating and Research Involved in a large number of single centre, and UofA Centre (EPICORE) multicentre clinical trials in cardiovascular disease and other disease areas Gastrointestinal and Liver Disease Research Conducts clinical trials UofA Group Health Research Innovation Facility Still under construction although will probably conduct UofA trials in the future Human Neurophysiology Lab. Patient research subjects but seemingly no clinical UofA trials Institute for Reconstructive Sciences in Conducts clinical trials AHS Medicine (iRSM) (Misericordia) Institute for Stuttering Treatment and Patient research subjects but seemingly no clinical UofA Research (ISTAR) trials Libin Cardiovascular Institute of Alberta Conducts clinical trials UofC (LCIA) Mazankowski Alberta Heart Institute Conducts clinical trials UofA & AHS Northern Alberta Clinical Trials and Research A research and clinical trials network supporting and UofA & AHS Centre (NACTRC) Clinical Trials Support Unit managing clinical trials Psychosis Research Unit Conducts clinical trials UofC Psychotherapy Research Group Conducts clinical trials UofA Rehabilitation Neurosciences Research Working with patients to develop devices. Cannot UofA Group determine if they conduct clinical trials 28
  • 29. Facility Description Affiliation SCI Alberta Conducts clinical trials UofA & Calgary Tom Baker Cancer Center Clinical Research Conducts clinical trials UofC Program Ward of the 21st Century Conducts clinical trials UofC & AHS Women & Children's Health Research Conducts clinical trials through the Child and Family UofA Institute (WCHRI) Clinical Research Unit (CRU) & Women’s CRU. Other Clinical Trials Units within Alberta CTU Description URL Centre for Sleep and Human Conducts many Phase II –IV clinical www.centreforsleep.com Performance trials Department of Paediatrics, Members conduct numerous clinical www.calgaryhealthregion.ca/clin/chil University of Calgary trials d/paed/directory/neonatology.html; www.ucalgary.ca/paed/ Multiple Sclerosis Patient Care and Participates in clinical trials www.albertahealthservices.ca/service Research Clinic s.asp?pid=service&rid=4306 Northwest Dermatology and Laser Undertaking clinical trials in http://northwestdermatology.ca/ Centre psoriasis Pediatric Centre for Weight and All who enroll in the clinic have the www.albertahealthservices.ca/pcwh.a Health (PCWH) opportunity to participate as sp research volunteers 29
  • 30. OTHER HEALTH RESEARCH SUPPORT CAPABILITIES Other health research support capabilities fall into the following categories: • pre-clinical facilities • biorepositories/ tissue banks • clinical trials support facilities • business support platforms Pre-Clinical Facilities Alberta has five facilities that offer pre-clinical services in addition to animal models described above. Pre-Clinical Platforms Facility Description Affiliation Bone Imaging Laboratory Studies include pre-clinical and clinical research UofC Clark H. Smith Brain Tumour Centre Has “Pre-Clinical Testing Core” UofC (SACRI) NuRx Can take clients’ products from discovery and AITF development through scale-up, prototyping and regulatory stages, to pre- and post-clinical trials. Pharmaceutical Production Research Offers scale-up and manufacturing development at the UofC Facility (PPRF) pre-clinical stage Surgical Medical Research Institute Has experimental surgical facilities, including rooms UofA (SMRI) suitable for operating on large and small animals An initial CFI investment of $36 million has been leveraged to build three cGMP (current Good Manufacturing Practices) cell manufacturing facilities in Toronto, Montréal and Edmonton. These facilities will be completed by early 2013 and will join others across the country to form CellCAN, a new consortium that plans to support early phase clinical trials across Canada.5 Biorepositories Ten biorepositories or tissue banks were identified for this Asset Map. Six of these offer researchers appropriately consented tissues, blood, DNA, other molecular data, and anonymized clinical information. Four banks offer tissues from patients with cancer. Other tissues include those from patients with IBD, rheumatology; heart disease; bone and joint disease; kidney, liver and blood diseases. In three facilities, healthy tissue has been obtained for later use in the treatment of cancer 30
  • 31. or anemia, or for transplantation. The final facility is a biorepository of different Salmonella genetic strains. In general, the biobanking groups are small, utilize different protocols and lack a unified approach to ethics, shipping, processing or storage. The Canadian BioSample Repository (CBSR) is an attempt to bring together all Alberta’s tissue banking with unified Standard Operating Procedures (SOPs). Although affiliated with UofA, CBSR offers services across Alberta and Canada. It has specialized software that could eventually be applied to all Alberta’s tissue banking facilities, linking them together in a cloud computing environment. It also acts as support facility to clinical trials projects. Alberta’s Tissue Banks Facility Obtained From (Disease Type) Affiliation (Forzani & MacPhail) Colon Cancer Screening Cancer UofC Centre (CCSC) Biorepository ACRI Alberta Cancer Research Unit/ ACCRU Cancer UofC Alberta Cancer Clinic Research Unit Biorepository (in SACRI) Alberta Cord Blood Bank (For use in cancer, anemia) Edmonton Brain Tumor Tissue Bank and Bio-Repository Cancer UofC (SACRI) Canadian BioSample Repository (CBSR) IBD; rheumatology; heart disease; bone and joint UofA disease; kidney, liver and blood diseases Canadian Breast Cancer Foundation (CBCF) Tumor Cancer UofA Bank Comprehensive Tissue Centre (For transplantation use) AHS Inflammatory Bowel Disease (IBD) Consortium IBD UofC Tissue Bank Salmonella Genetic Stock Centre ID UofC Women & Children's Health Research Institute (For use in cancer, anemia) UofA (WCHRI) Clinical Trials Support Units AIHS is facilitating and coordinating a new initiative, the Alberta Clinical Research Consortium (ACRC), to streamline clinical trials support in the province so that there will be a single point of contact (rather than the current four or more) for all clinical trials’ administrative activities. This should attract additional health research activity and investment to the province. ACRC includes AHS, the College of Physicians & Surgeons of Alberta, Covenant Health, UofA (representing NACTRC and others), UofC (representing CCCR and others) and the cancer research legacy groups (e.g., ACCRU). It aims to: • improve the efficiency of clinical research administrative processes across the province • standardize legal review guidelines for contracts and agreements related to clinical research 31
  • 32. establish provincial standards and opportunities for training of clinical researchers and staff. As part of the process for creating a single facility for clinical trials support, Alberta’s research ethics procedures are also being harmonized with the help of AIHS. In February 2011, the six provincial organizations with Research Ethics Boards signed the Research Ethics Reciprocity Agreement. This agreement allows for a harmonized ethics review process for multi-jurisdictional health research, i.e. the process of ethics review will be streamlined for multi-site health research. Work is underway to implement this agreement6. Clinical Trials Support Units in Alberta Facility Description Affiliation ACRI Cancer Clinical Research Unit (ACCRU) Coordinates clinical research throughout Alberta. UofC & AHS Offers a single point of contact, ethical approvals, and contract negotiations AHS Laboratory Services Business Performance Provides clinical laboratory services to clinical trials AHS Research and Clinical Trials Calgary Centre for Clinical Research (CCCR) Clinical trials and epidemiology co-ordination facility UofC Calgary Laboratory Services Provides clinical laboratory services to clinical trials AHS Canadian BioSample Repository (CBSR) Processes, stores, and retrieves tissue samples from UofA clinical trials Canadian VIGOUR Centre (Virtual Coordinating Manages clinical trials of cardiovascular therapies UofA Centre for Global Collaborative Cardiovascular Research) Northern Alberta Clinical Trials and Research A research and clinical trials network supporting and UofA & AHS Centre (NACTRC) managing clinical trials Pan Alberta Metabolomics Platform (PanAMP) Provides laboratory services to clinical trials UofA 32
  • 33. Business Support Platforms Four institutions identified for this Asset Map offer business support services to health researchers wishing to translate and commercialize their findings. (NOTE: Similar services may exist, but business support and industrial activities were generally outside the scope of this report.) Business Support Platforms Facility Description Affiliation Alberta Centre for Advanced MNT Provides specialized services in key areas for the UofA & Products (ACAMP) commercialization of micro nano technology (MNT) products: Calgary (i) Marketing & Business Development; (ii) Product Development; (iii) Packaging and Assembly; (iv) Test and Characterization. Alberta Innovates Centre for A Centre for Research and Commercialization UofA/ AITF Carbohydrate Science Alberta Innovates Centre for A Centre for Research and Commercialization UofC/ AITF Integrated Biomedical Technology (Biovantage Inc.) NuRx Provides people, equipment and facilities to help companies AITF grow by providing services that aid in the research, development and commercialization of novel products 33
  • 34. OTHER HEALTH RESEARCH ENTITIES & FACILITIES Not all the facilities identified for this Asset Map fit well into the categories described above. The following two organizations have not been categorized: • Alberta Prion Research Institute • Alberta Water Research Institute (now operates as AI-EES Water Resources Strategic Area). In addition, many of the facilities which have been categorized above have a broad mandate that goes beyond the categories prescribed in this document. The majority of organizations undertaking wide- ranging activities are involved in research in specific disease areas or population health. These organizations are listed below. Other Health Research Organizations Facility/ Affiliation UofA Alberta Institute for Human Nutrition Alberta Transplant Applied Genomics Centre (ATAGC) Bebensee Schizophrenia Research Unit Brain Neurobiology Research Program Centre for Health Evidence (CHE) Centre for Health Promotion Studies Centre for Prions and Protein Folding Diseases Common Spinal Disorders Research Centre (CSD) Depression and Stress Disorder Research Group Health Research Innovation Facility Human Neurophysiology Lab. Institute for Stuttering Treatment and Research (ISTAR) Li Ka Shing Institute of Virology (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of Excellence in Viral Hepatitis Research) Membrane Protein Research Group Molecular and Cell Biology of Lipids Neurochemical Research Unit Pharmaceutical Orthopaedic Research Lab. (PORL) Psychotherapy Research Group Signal Transduction Group Team to Prevent Blindness UofA & AHS Aleksandar Kostov Assistive Technology Research Lab 34
  • 35. Facility/ Affiliation Autism Research Centre UofC Institute for Biocomplexity and Informatics McCaig Institute for Bone & Joint Health Mental Health Centre for Education and Research Population Health Intervention Research Centre (PHIRC) Psychosis Research Unit UofL Canadian Centre for Behavioural Neuroscience AHS Edmonton Scoliosis Research Group Knowledge Translation All the facilities identified for this Asset Map engage in knowledge translation to some extent, but for a number of organizations knowledge translation (KT) is the “raison d’être”. These organizations are listed below. Alberta’s Health Research Knowledge Transfer Platforms Facility Description (Pillar) Affiliation ACADRE – Alberta Network Environments Where Aboriginal communities and educational UofA for Aboriginal Health Research institutions share knowledge Alberta Centre for Injury Control and Main roles in injury prevention include education, UofA Research promotion of healthy public policy, and knowledge translation Alberta Health Services (AHS) Office of Supports surgical research and evidence-based UofC & AHS Surgical Research introduction of new technology Alberta Research and Innovation Centre in Coordinating efforts and facilitating communication AHS Addiction and Mental Health (ARIC) among a network of stakeholders Alberta Research Centre for Health Supports and fosters the development of evidence-based UofA Evidence (previously Alberta Research practice Centre for Child Health Evidence) Calgary Institute for Population and Public Aims to improve health care delivery and population UofC Health (CIPPH) (incorporating former health through a shared research agenda and knowledge Centre for Health and Policy Studies exchange between providers and researchers [CHAPS]) Complementary & Alternative Research & Equips patients, families and health care providers with UofA Education (CARE) the knowledge required to ensure CAM is safely administered and effective Department of Public Health Sciences Pursues and disseminates knowledge relevant to UofA 35
  • 36. Facility Description (Pillar) Affiliation managing, monitoring, and improving the quality of community health status and health services Health Research Transfer Network of Network that undertakes activities to strengthen the flow AIHS Alberta of knowledge between researchers, practitioners, patients, and policy makers iNFORMATICS Research Centre Dissemination of information and partnerships with UofC research institutions, businesses, and public organizations Institute for Continuing Care Education and Helps identify best practices in continuing care and UofA, AHS, Research (ICCER) encourages the uptake of them into education and others practice Institute of Health Economics (IHE) Provides policy relevant research and programs to UofA & support evidence-informed healthcare decision making Calgary and priority setting Medically At-Risk Driver Centre Provides a forum where researchers, policy makers, and UofA community stakeholders can work collaboratively on the implementation of policy and practices Rehabilitation Research Centre (RRC) Consults, provides resource materials and connects UofA people and organizations to relevant information and research 36
  • 37. Networks These networks developed within provincial institutions and organizations. Alberta’s Health Research Networks Facility/ Affiliation Description (Pillar) UofA ACADRE – Alberta Network Environments for Links expertise of Aboriginals, academics, government and community Aboriginal Health Research institutions Alberta Asthma Centre Network of practitioners, interest groups and researchers Alberta Centre on Aging Links research and education groups and works in partnership with the government, regional health authorities, community groups, gerontological associations, and other organizations Immunology Network (ImmuNet) Interdepartmental and multidisciplinary network at UofA Institute for Continuing Care Education and Collaboration between the UofA, NorQuest College, CapitalCare, AHS, Research (ICCER) (with AHS & others) Excel Society, and Bethany Society Northern Alberta Clinical Trials and Research Research and clinical trials network Centre (NACTRC) (with AHS) UofC Bioinformatics Innovation Centre (formerly Based at the University of Calgary with nodes in Edmonton, Vancouver Integrated and Distributed Bioinformatics and Winnipeg. Also manages BioMoby, an Information and Platform for Genome Canada) Communications Technology network used by researchers across Alberta Calgary Institute for Population and Public A virtual institute incorporating people at the University of Calgary Health (CIPPH) (incorporating former Centre and AHS for Health and Policy Studies [CHAPS]) Libin Cardiovascular Institute of Alberta (LCIA) Virtual institute that coordinates all cardiovascular research, (with AHS) education and patient care within both AHS and UofC UofA & Calgary Alberta IBD Consortium Links clinicians, researchers and patients across the province SCI Alberta Group of scientists from UofA and UofC conducting translational research in the field of spinal cord injury (SCI) AHS Alberta Centre for Child, Family and Works in conjunction with nine Alberta child-serving ministries, the Community Research (ACCFCR) Government of Canada and numerous other partners and collaborators Alberta Research and Innovation Centre in Virtual centre of research excellence serving a network of Addiction and Mental Health (ARIC) stakeholders (researchers, practitioners, policy makers and consumers) (under development) AIHS Health Research Transfer Network of Alberta Province-wide network that undertakes activities to strengthen the flow of knowledge between researchers, practitioners, patients, and policy makers 37
  • 38. KEY AND APPARENT STRENGTHS Comparative Positioning One method of determining Alberta’s strengths in health research is to compare the province with other jurisdictions. A detailed review of other provinces or countries was beyond the scope of this project. However, limited data were available from information sourced as part of the project. These are described below in order of Alberta’s strengths: • Alberta led Canada in the number of Immunology papers published between 1982 and 2005, and consistently ranked second over Ontario and BC in Pharmacology & Pharmacy publications7. Whether it has maintained its leading position since is unknown. • In 2010, Alberta was fourth in Canada in the number of managed clinical trials. This is commensurate with the fact that Alberta has the fourth largest population8 - thus the province was average within Canada. • Alberta received 7.4% of Genome Canada Applied Human Health, Competition III and Science & Technology Platforms funding but has 10.8% of the population9. Thus, the province is punching below its weight in genomics. On the other hand, Alberta is home to one of Genome Canada’s Science and Technology Platforms, the Bioinformatics Innovation Centre (aka Integrated and Distributed Bioinformatics for Genome Canada) Platform in Calgary. • Alberta has no health related federally funded Networks of Centres of Excellence or Centres of Excellence for Commercialization and Research, although it does host the National Research Council of Canada’s (NRC) National Institute of Nanotechnology (NINT), which receives approximately $12 million in NRC funding each year10.In the past, the province was home to: • Canadian Obesity Network (CON) (UofA and Capital Health, 2005-2010) • Canadian Bacterial Diseases Network (CBDN) (UofC, 1989-2005) • Protein Engineering Network (PENCE Inc.) (UofA, 1989-2005) 11. • The province held the following ranking amongst all provinces between 1991 and 2005 in the number of papers published in the areas of: - Maternal and Child Health – 6th - Mental Health and Addictions – 5th - Health System Sustainability – 5th 38
  • 39. The above list of rankings mainly concentrates on basic health research. In fact, many of Alberta’s strengths in health research, in the opinion of the experts interviewed for this Asset Map, are in the areas of basic research rather than farther along the research and innovation spectrum. Identified Strengths Stem Cells Alberta has some strength in stem cell research, particularly as concerns islet cells for diabetes. Research from the Alberta Diabetes Institute (ADI), has resulted in improved patient outcomes worldwide from ADI’s development of the Edmonton Protocol islet transplant diabetes treatment12. Nanotechnology Alberta is home to a pan-Canadian facility headquartered in Edmonton, the National Institute for Nanotechnology. Prion Research Alberta has significantly improved its national standing in prion research since 2005. Of the full scientific members of Prionet Canada, 41/91 (45%) at September 2010 were Alberta based researchers13. Furthermore, the province is home to three of Canada’s four Canada Research Chairs targeting prion disease and the only “Chair in Prion Disease”14. Alberta facilities include the Alberta Prion Research Institute and the Centre for Prions and Protein Folding Diseases. Genomics The comparative positioning point above suggests that Alberta is not one of the strongest provinces in genomics and it also lacks next generation sequencers. Nonetheless, Alberta has a large number of other assets for genomics research, the majority of which are essentially basic research facilities. This includes those areas in which Alberta has national prominence such as genotyping, bioinformatics and metabolomics. However, in terms of the latter, the Pan Alberta Metabolomics Platform (PanAMP) (which has international prominence) has become a clinical trials support unit as well as a basic research facility, thereby shifting its focus somewhat towards health outcomes. The metabolomics community at UofA has also identified novel metabolic biomarkers for asthma, pregnancy complications, bacterial pneumonia, and inflammatory arthritis15, although whether these have been developed is unknown. Furthermore, a metabolomics based company, Chenomx Inc., has been spun out of this university. 39
  • 40. Virology Virology is considered to be an area of strength for Alberta, particularly in terms of basic research. Two virology facilities were identified for this report: Li Ka Shing Institute of Virology (formerly Alberta Institute for Viral Immunology [AIVI] and Centre of Excellence in Viral Hepatitis Research) and the Snyder Institute of Infection, Immunity & Inflammation. Imaging Imaging is identified as an area of strength in Alberta with thirty four imaging facilities in the province. Dr Gino Fallone and his team at the Cross Cancer Institute are developing a new radiation treatment device that is expected to change cancer treatment by better targeting solid tumours and allowing people with abdominal cancer access to radiation16. In addition, a group at Clark H. Smith Brain Tumour Centre, led by Dr Garnette Sutherland, has pioneered the development of intraoperative MRI technology, which can be used in the operating room to dramatically improve the safety and success of brain tumor surgeries and other procedures that require great precision and accuracy17. In the cardiovascular arena, Dr Matthias Frederich developed routine protocols for the clinical application of Cardiovascular Magnetic Resonance (CMR), has developed novel software in cardiology diagnostics, and has established a spin-off company18. Cardiovascular Diseases The six cardiovascular facilities identified for this report are all closely aligned with improving health outcomes. For example, the Libin Cardiovascular Institute of Alberta is a provincial centre of excellence and has one of the largest cardiovascular magnetic resonance programs in the world19. The Alberta Cardiovascular & Stroke Research Centre (ABACUS) is an $18 million (M), translational “research hospital within a hospital”, while the Mazankowski Alberta Heart Institute provides broad- based patient care as well as conducting research. Libin, ABACUS, Mazankowski and VIGOUR are also major international centres for clinician-initiated randomized clinical trials in cardiovascular diseases. Cancer Alberta spends a significant amount on cancer research. Its $500M cancer research and prevention Legacy Fund (endowment) provides approximately $12M for cancer prevention and $13 million for cancer research per year. The cancer research program is matched by funding from the Alberta Cancer Foundation bringing the total provincial funding for research and prevention to approximately $40M/year. The focus on cancer research and innovation includes three biorepositories. However, there is concern about perceived poor returns on investment in term of patient outcomes. 40
  • 41. Neurological Diseases and Rehabilitative Medicine The province is strong in neuroscience research. Facilities include the world-renowned Hotchkiss Brain Institute, as well as facilities at the Universities of Alberta and Lethbridge. There are at least 24 endowed research Chairs in the neurosciences and 21 facilities that target neurological conditions. A number of neuroscience facilities target rehabilitation, e.g. Centre for Ambulatory Rehabilitation Research and Education (CARRE), Common Spinal Disorders Research Centre (CSD), Rehabilitation Neurosciences Research Group, SCI Alberta. Rehabilitative medicine is a major strength for the province and includes not just the aforementioned four facilities, but also the Institute for Reconstructive Sciences in Medicine (iRSM). The latter is a world leader in medical reconstructive sciences with an international reputation for innovation and advances in patient care and research. Engineering Engineering is considered a key strength with the province’s expertise in this field underpinning its strengths in nanotechnology, medical device development, and tissue bank management. The Schulich School of Engineering at UofC is the second largest engineering school in Canada. It has major research and education programs in biomedical engineering, as well as six endowed research Chairs in this discipline. Key facilities at Schulich identified for this Asset Map are the Centre for Bioengineering Research and Education (CBRE), Pharmaceutical Production Research Facility (PPRF), the Bone Imaging Lab and other facilities within the Mechanical and Manufacturing Engineering Research Laboratories, and the Advanced Micronanosystems Integration Facility (AMIF) and other labs within Electrical and Computer Engineering Research. CBRE has expertise in the genome sciences, biomechanics, bioinformatics, biomaterials, cell and tissue engineering, and nanotechnology20. Many of the imaging innovations described above (e.g., those by Dr Garnette Sutherland and Dr Matthias Frederich), as well as many other bio-engineering advances, were developed by CBRE scientists21. Researchers at Schulich were also instrumental in developing the automated storage and retrieval facility at the Canadian BioSample Repository. Engineering is also strong at UofA. Key facilities include the National Institute for Nanotechnology (NINT) and the Peter S Allen MR Research Centre (formerly In Vivo NMR), as well as laboratories focused on rehabilitation engineering/ biomechanics, spinal cord injury, neuroprostheses, cryobiology, biomaterials, nanotechnology, and tissue engineering22. 41
  • 42. OPPORTUNITIES AND CHALLENGES Opportunities and Challenges in Areas of Strength The description of Alberta’s strengths in health research also touches on some of the following challenges and opportunities. • Basic Research. Many of the province’s strengths are in basic research including most of genomics and virology, and some stem cell, nanotechnology and prion research. A challenge for the researchers is to focus their research and to present their research findings in such a way that they can be taken up by others and applied to health improvements or population health. • Neurosciences. The province has major strengths in neurological research but, except for research that targets rehabilitation, much of it concerns fundamental knowledge with translation expertise generally lacking. • Cancer. There are opportunities for the cancer research within the province to better align with improved health outcomes. • Imaging. Although imaging is strong in the province, there are still significant opportunities to expand the outputs towards improved health outcomes. Other Challenges and Opportunities Challenges • Competition among the Universities of Alberta, Calgary and Lethbridge is still evident but it was thought that is could be partly reduced by group grants. However, competition continues to be supported by other government policies such as funding competitions and student recruitment, as well as lack of coordination between government departments (e.g. AHW and EAE). • AHRIS represents a new way of looking at health research and innovation in Alberta and involves a refocusing of provincial investments to translational activities as well as a top down approach to health research. It will be a challenge to bring all academic health researchers on board and shift their activities towards translation. However, there will also be opportunities for willing researchers to take advantage of the new funding systems. • University policies for promotion and tenure focus on scientific publications and research funding, not on innovation and translation. This is an issue for the province in trying to shift attention from basic to translational research. 42
  • 43. The demise of Alberta Heritage Foundation for Medical Research and its replacement by AIHS, as well as the replacement of the Alberta Ingenuity Fund by AITF, has resulted in concerns and uncertainty among many researchers who do not yet understand the role of the new entities. On the other hand, this change also offers opportunities to those who want to move forward within the government’s priority research areas. • Although many health research plans have been produced, there have been challenges in implementing them. In fact, many have remained just as plans, with no action taken. Whether and how AHRIS will be implemented on a practical level is unknown. • The lack of major health-based industry in the province is a challenge in terms of commercializing ideas from Alberta’s researchers. Opportunities • Alberta has a single healthcare system with two medical schools, two large cities, and a rural/urban divide that should be a hotbed for new innovations. • AITF’s accelerator program has the potential for world leadership in certain areas, such as nanotechnology. • “Group grants” from the funding agencies have been instrumental in bringing together researchers from different Alberta universities as collaborators and should continue. • Strong government and the Boards of all major institutions involved in health research need to push health research collaborations. Opportunities will be acted upon only with bold vision and leadership. • There are other opportunities to establish Innovation Platforms by encouraging collaborations among researchers within individual health research platforms and establishing additional networks among organizations. Ideas for Platform creation could also be obtained from other jurisdictions. For example, the European Commission supports the establishment and sustainability of Technology Platforms (which are essentially Innovation Platforms). These are led by industry and involve defining and acting upon research priorities23. • Often, use of core facilities is restricted, either formally or informally, to members of the department that houses the core24. Yet, one of the most cost-efficient ways in improving Alberta’s Innovation Platforms is to broaden their user base. To this end, information about the facilities needs to be effectively disseminated and the services marketed. This Asset Map helps in the dissemination but it is up to the facilities themselves to improve their marketing and service offerings. 43
  • 44. INNOVATION PLATFORM FACILITATORS There are a number of organizations and entities in place in Alberta which support the creation and/or development of health-related innovation platforms. These include: AIHS Ethics and Innovation Platforms Unit AIHS Ethics and Innovation Platforms unit provides ethics review services for community-based researchers. It also assists decision-makers, researchers and health practitioners with emerging ethics issues related to a range of knowledge-generating projects (including research and various types of applied projects; e.g., quality improvement and evaluation). Strategic Clinical Networks Strategic Clinical Networks (SCNs) are province-wide teams bringing together the experiences and expertise of health care professionals, researchers, government, communities and patients and their families to improve our health care system. Each network will focus on a different area of health with the goal to: • Improve the patient experience • Ensure care is available when it’s needed • Put strategies in place to keep Albertan’s healthy • Provide Albertans with the best health care for generations to come Six SCNs are underway: • Addiction and Mental Health • Bone and Joint Health • Cancer Care • Cardiovascular Health and Stroke • Obesity, Diabetes and Nutrition • Seniors’ Health Six more SCNs are scheduled to be in operation by March 2013: 44
  • 45. Complex Medicine (which will include the current Respiratory Clinical Network) • Maternal Health • Neurological Disease, ENT (ear, nose, throat) and Vision • Newborn, Child and Youth Health • Population Health and Health Promotion • Primary Care and Chronic Disease Management Laboratory Alberta Laboratory Alberta aims to take advantage of the opportunities involved in improving Alberta’s health care system and the province’s strengths in health research and innovation. The concept is to construct a single health care delivery-research infrastructure platform that: • Brings together and integrates all of Alberta’s health resources, turning Alberta into a giant health research laboratory • Provides unique opportunities for clinical, health services and population health research • Links biomedical with epidemiologic and clinical data for translational research • Facilitates translation of knowledge into improved health care practices and policies • Attracts talented researchers and grant funding to Alberta • Attracts industry investment to commercialize health research outputs • Utilizes the health systems expertise to generate economic benefits for Alberta. It will have four linked components: • A cross-sectoral provincial database housing data from the ministries of health, education, justice, social services, aboriginal services, industry and other relevant portfolios, in separate but linkable form (termed Alberta Data Haven) • The Alberta Clinical trials Consortium (described elsewhere) • Alberta Healthcare Improvement Inc., which will bring quality improvement innovations and efforts directly into the health care system to improve health outcomes and efficiencies • Alberta Biobank (presumably incorporating CBSR and the province’s other biobanks)25. 45
  • 46. Campus Alberta Campus Alberta, a Government of Alberta initiative, offers the opportunity for the facilities at each of Alberta’s universities to be made available to all researchers within the province. It also aims to improve access to education and training through collaborations between all publicly funded post- secondary institutions and the apprenticeship and industry training system, thereby increasing the number of highly skilled people who can work in health research as well as other areas of importance to the province. Such collaborations allow: • Flexible transfer arrangements between institutions • High quality online learning offered by 15 institutions through eCampusAlberta and hands-on support for distance learners at over 85 northern Alberta learning sites • A common industry-developed provincial curriculum that allows apprentices to take any period of technical training at any Alberta post-secondary institution • Coordinated applications to any of Alberta's public post-secondary institutions and electronic transfer of academic transcripts26. Centres for Research and Commercialization (CRC) The CRC program is one of AITF’s capacity building initiatives and includes two Centres that target health research (Table 8). CRCs consist of collaborative hubs that are fully integrated into Alberta’s universities, training Alberta’s top students, working with local and international industry partners, and providing a strong platform for Alberta’s next generation economy27. Centres for Research and Commercialization Centre Description Alberta Innovates Centre for Includes investigators from both the Universities of Alberta and Calgary that tackle Carbohydrate Science ambitious, multidisciplinary research problems on carbohydrate structure and function. Research includes vaccine development, drug discovery, and synthetic biological materials, that have key medicinal and commercial applications. Works internationally with other academics, industry and government on key issues. Alberta Innovates Centre for Based at the UofC with an international network of academic and corporate Integrated Biomedical Technology partnerships. Helps develop new medical devices, therapeutic products and (Biovantage Inc.) treatment delivery solutions. Specializes in biomedical engineering, particularly imaging and biosensors. 46
  • 47. Academic Health Network The Academic Health Network (AHN) integrates health service delivery, teaching, and research, closely linking medical school faculty with all healthcare providers within both affiliated hospitals and their broader network of care28. The core of the academic health network is the UofA Faculty of Medicine and Dentistry and the UofC Faculty of Medicine. The UofA is affiliated with six patient care facilities and has 44 research institutes, centres and groups covering all clinical areas. The UofC is affiliated with five patient care facilities and has 11 research institutes and centres. 47
  • 48. GLOSSARY AAFC Agriculture and Agri-Food Canada AB Alberta AHW Alberta Ministry of Health & Wellness AHRIS Alberta’s Health Research and Innovation Strategy AHS Alberta Health Services AIHS Alberta Innovates Health Solutions AITF Alberta Innovates Technology Futures CBSR Canadian BioSample Repository CFI Canada Foundation for Innovation CIHR Canadian Institutes of Health Research CofE Centres of Excellence CRC Centre for Research and Commercialization CRC Colorectal cancer (context distinguishes this from above use of abbreviation) CTU Clinical trials unit or study site CTSU Clinical trials support unit DNA Deoxyribonucleic acid EAE Alberta Enterprise and Advanced Education FPLC Fast protein liquid chromatography GC Gas Chromatography HPLC High performance liquid chromatography IBD Inflammatory bowel disease IP WG AIHS Innovation Platforms Working Group LC Liquid Chromatography M Million MH&A Mental Health and Addictions MNT Micro nanotechnology MS Mass spectrometry NMR Nuclear Magnetic Resonance NSERC Natural Sciences and Engineering Research Council of Canada PC Preclinical RNA Ribonucleic acid RT-PCR Real-time polymerase chain reaction TCR T-cell receptor 48
  • 49. METHODOLOGY NOTE: The data and information contained in this report are believed to be reliable and accurate up to August 31, 2011 but are not guaranteed for completeness or accuracy. Process The following steps were taken to develop the first draft of the Asset Map: The framework for the report was supplied by Alberta’s Health Research and Innovation Strategy (Alberta Advanced Education and Technology, Alberta Health and Wellness; August 2010) and the new mandate of AIHS. Discussions with key personnel at AIHS helped to frame the structure of the report. AIHS supplied the names of key individuals within Alberta’s health research sector who have expertise in the province’s health research assets. Using a Discussion Guide created for this purpose, five experts were interviewed (listed in Appendix 7) to obtain an indication of which facilities they thought may be Innovation Platforms and to help identify strengths, opportunities and challenges. • AIHS provided many of the major published sources used for this report including: • Alberta Innovates Technology Futures. Creating Opportunity. Alberta’s Nanotechnology Asset Map. 2009. www.albertatechfutures.ca/nanoAlberta/AlbertaNanoAssetMap.aspx. Accessed August 19, 2011. • Alberta Prion Institute Annual Report 2009-2010. • Genome Alberta. Genomics, proteomics, metabolomics and bioinformatics research in Alberta. Knowledge Asset Road Map development. July 2009. • Genome Alberta. Next-generation sequencing, genotyping, proteomics, metabolomics and bioinformatics. An Asset Road Map for Alberta. July 2010. • ICT Institute. Alberta Information and Communications Technology (ICT) Atlas. Version 1.0. February 2007 • Science-Metrix. Scientific Positioning of Alberta in Health Research Specialties. July 23, 2007. Stéphane Mercure, Grégoire Côté, Éric Archambault. • Science-Metrix. Scientometric Assessment of Alberta’s Performance in Three Research Areas. 15 January 2007. David Campbell, Grégoire Côté. • Tyrrell L, Palmer R. Alberta Health Services and Health Research Report. April 2009. 49
  • 50. Other publications used included: • Industry Canada. Canadian Asset Map for Stem Cell and Regenerative Medicine. Summary www.ic.gc.ca/stemcells, accessed August 26, 2011. Full report: In press. • Information on key research centres and Centres of Excellence and Commercialization was obtained from the aforementioned reports and updated from those centres’ websites. • Additional information was obtained from searching, between August 15 and September 13: • The Universities of Alberta, Calgary and Lethbridge websites for research institutes, research centres, research groups, and research facilities with utility in health research • Alberta Health Services website for “research” • Alberta Innovates websites (www.albertainnovates.ca) on research institutions • The government of Alberta Advanced Education and Technology industry sector sites (www.advancededucation.gov.ab.ca/technology/industry.aspx) • The websites of researchers who have obtained grants from the Canada Foundation for Innovation (CFI) (www.innovation.ca/projects/index.cfm). Note that the short time frame for this project did not provide the time to also search the Natural Sciences and Engineering Research Council of Canada (NSERC) or Canadian Institutes of Health Research (CIHR) project databases. CFI was chosen due to its tendency to approve infrastructure grants. • Google searches for “Innovation Platforms” and similar terms; “core facilities” and similar terms; “Alberta health research institute”; “Alberta health research centre”; “Alberta clinical trials”; Alberta “tissue bank”, “biobank”, “biorepository”, “registry”; and then an assessment of the websites identified • The Genome Canada and Networks of Centres of Excellence websites (www.genomecanada.ca; www.nce-rce.gc.ca) • Information on Alberta’s education facilities was obtained through Google searches “Alberta University”, “Alberta College”, “Alberta Community College”, and then a review of the websites identified. • Information obtained on facilities from all the aforementioned websites and reports was entered into a master Table (Appendix 2) and an Excel spreadsheet. • The data for each relevant facility were categorized according to university/ organization, pillar, type and sub-type of platform, and disease area (if relevant). • Analyses were conducted in Excel to determine numbers of facilities according to type and sub- type of platform, disease area, and university/ organization. 50
  • 51. Constraints Although extensive internet searches were made for all Alberta’s health research platforms, it is probable that some were not identified through the methodology used. Furthermore, some of the identified platforms may only be tangentially related to health research. The Asset Map has a heavy reliance on website information which may not be current or provide the sought-for information. Most of the institutions included in this Asset Map have a wide range of facilities and equipment, not all of which can be located on their websites Areas in which provincial asset maps have already been developed may be more thoroughly inventoried in this document. For example, the fact that so many genome sciences (sometimes referred to as “Omics” or just “genomics”) platforms have been identified may be an artifact of the sources used for this Asset Map. The two Genome Alberta Asset Maps29 did a thorough job of identifying equipment and facilities that could be used in genomics, proteomics, metabolomics, transcriptomics, nutrigenomics, pharmacogenomics and metagenomics (including lipidomics) research. Those Asset Maps also supply detailed descriptions of the genome sciences and their use in understanding and managing disease. This Asset Map does not identify all the Clinical Trials Units or study sites (CTUs) in the province, as this was beyond the scope of the original project. However, any CTUs found during the searching of Alberta’s health research assets are included in the inventory. As Alberta had 1,866 clinical trials in progress at the beginning of 2010 (clintrials.gov - a US registry of clinical trials conducted around the world), it is clear that not all CTUs are included in this inventory. One way of measuring Alberta’s strengths in health research is to compare it with other jurisdictions. A detailed review of other provinces or countries was not possible within the timeframe for this Asset Map. However, limited data were available from some of the sources used. 51
  • 53. 1 Alberta Innovates Health Solutions Strategic Framework, 2011. 22 Core Facilities: Maximizing the Return on Investment. www.ScienceTranslationalMedicine.org, Vol 3 Issue 95, 10 August 2011. Accessed from stm.sciencemag.org August 12, 2011. 3 Alberta Innovates Technology Futures. Creating Opportunity. Alberta’s Nanotechnology Asset Map. 2009. p. 31. www.albertatechfutures.ca/nanoAlberta/AlbertaNanoAssetMap.aspx. Accessed August 19, 2011. 4 http://en.wikipedia.org/wiki/Biosafety_level#Biosafety_level_3. Accessed September 2, 2011. 5 Industry Canada. Canadian Asset Map for Stem Cell and Regenerative Medicine. Summary www.ic.gc.ca/stemcells, accessed August 26, 2011. Full report: In press. 6 Innovation Platform Working Group Notes April 19, 2011. 7 Science-Metrix. Scientific Positioning of Alberta in Health Research Specialties. July 23, 2007. Stéphane Mercure, Grégoire Côté, Éric Archambault. 8 Genome British Columbia. Clinical Trials and Preclinical Infrastructure Asset Map. www.genomebc.ca/profile/publications/asset-maps/. Accessed September 9, 2011. 9 www.genomecanada.ca accessed September 12, 2011. Population data from Genome British Columbia. Clinical Trials and Preclinical Infrastructure Asset Map. www.genomebc.ca/profile/publications/asset-maps/. Accessed September 9, 2011. 10 Alberta Innovates Technology Futures. Creating Opportunity. Alberta’s Nanotechnology Asset Map. 2009. p. 31. www.albertatechfutures.ca/nanoAlberta/AlbertaNanoAssetMap.aspx. Accessed August 19, 2011. 11 The only federal Network of Centres of Excellence located in Alberta is Carbon Management Canada in Calgary (focused on the oil, gas and coal sector). www.nce-rce.gc.ca/NetworksCentres-CentresReseaux/Index_eng.asp. Accessed August 23, 2011. 12 Industry Canada. Canadian Asset Map for Stem Cell and Regenerative Medicine. Summary www.ic.gc.ca/stemcells, accessed August 26, 2011. Full report: In press. 13 www.prionetcanada.ca. Accessed August 20, 2011. 14 Frank R. Jirik, Canada Research Chair in Molecular Medicine and Transgenic Research, UofC; Christopher Power, Canada Research Chair in Neurological Infection and Immunity, UofA; David Westaway, Canada Research Chair in Prion Disease, UofA.www.chairs-chaires.gc.ca. Accessed September 12, 2011. 15 Genome Alberta. Next-generation sequencing, genotyping, proteomics, metabolomics and bioinformatics. An Asset Road Map for Alberta. July 2010. 16 http://www.edmontonjournal.com/health/Cross+Cancer+Institute+sets+standard+treatment+abdominal+cancers /5267957/story.html. Accessed September 8, 2011. 17 www.ucalgary.ca/braintumourcentre/node/105. Accessed September 8, 2011. 18 www.ucalgary.ca/bme/research/advances. Accessed September 12, 2011. 19 www.libin.ucalgary.ca/bios/bio.php?bio=Friedrich. Accessed September 8, 2011. 20 http://schulich.ucalgary.ca and www.ucalgary.ca/bme/research. Accessed August 26, 2011. 21 www.ucalgary.ca/bme/research/advances. Accessed September 12, 2011. 22 www.bme.med.ualberta.ca/Home/Research/Groups/. Accessed August 31, 2011. 23 European Technology Platforms. http://cordis.europa.eu/technology-platforms/home_en.html. Accessed August 17, 2011.
  • 54. 24 Farber GK, Weiss L. Core Facilities: Maximizing the Return on Investment. www.ScienceTranslationalMedicine.org, Vol 3 Issue 95, 10 August 2011. Accessed from stm.sciencemag.org August 12, 2011. 25 www.med.ualberta.ca/Library/Documents/academic_plan.pdf. Accessed August 31, 2011. 26 www.advancededucation.gov.ab.ca/post-secondary/campusalberta.aspx. Accessed August 26, 2011. 27 www.albertatechfutures.ca/CapacityBuildingPrograms/CapacityBuildingInitiatives/ CentresforResearchandCommercialization.aspx. Accessed August 17, 2011. 28 Defined in Tyrrell L, Palmer R. Alberta Health Services and Health Research Report. April 2009, p. 13: An Academic Health Centre is .. a constellation of functions and organizations committed to improving the health of patients and populations through the integration of their roles in research, education, and patient care to produce the knowledge and evidence base that becomes the foundation for both treating illness and improving health. The integration involves more than the simultaneous provision of education, research and patient care. It requires the purposeful linkage of these roles so that research develops the evidence base, patient care applies and refines the evidence base, and education teaches evidence-based and team-based approaches to care and prevention. 29 (1) Genome Alberta. Genomics, proteomics, metabolomics and bioinformatics research in Alberta. Knowledge Asset Road Map development. July 2009. (2) Genome Alberta. Next-generation sequencing, genotyping, proteomics, metabolomics and bioinformatics. An Asset Road Map for Alberta. July 2010.