Next generation analytics with yarn, spark and graph lab
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This document provides an overview of next generation analytics with YARN, Spark and GraphLab. It discusses how YARN addressed limitations of Hadoop 1.0 like scalability, locality awareness and shared cluster utilization. It also describes the Berkeley Data Analytics Stack (BDAS) which includes Spark, and how companies like Ooyala and Conviva use it for tasks like iterative machine learning. GraphLab is presented as ideal for processing natural graphs and the PowerGraph framework partitions such graphs for better parallelism. PMML is introduced as a standard for defining predictive models, and how a Naive Bayes model can be defined and scored using PMML with Spark and Storm.
![Big Data Computations
Computations/Operations
Giant 1 (simple stats) is perfect
for Hadoop 1.0.
Giants 2 (linear algebra), 3 (Nbody), 4 (optimization) Spark
from UC Berkeley is efficient.
Interactive/On-the-fly data
processing – Storm.
Logistic regression, kernel SVMs,
conjugate gradient descent,
collaborative filtering, Gibbs
sampling, alternating least squares.
Example is social group-first
approach for consumer churn
analysis [2]
OLAP – data cube operations.
Dremel/Drill
Data sets – not embarrassingly
parallel?
Machine vision from Google [3]
Deep Learning
Artificial Neural Networks
Speech analysis from Microsoft
Giant 5 – Graph processing –
GraphLab, Pregel, Giraph
3
[1] National Research Council. Frontiers in Massive Data Analysis . Washington, DC: The National Academies Press, 2013.
[2] Richter, Yossi ; Yom-Tov, Elad ; Slonim, Noam: Predicting Customer Churn in Mobile Networks through Analysis of Social
Groups. In: Proceedings of SIAM International Conference on Data Mining, 2010, S. 732-741
[3] Jeffrey Dean, Greg Corrado, Rajat Monga, Kai Chen, Matthieu Devin, Quoc V. Le, Mark Z. Mao, Marc'Aurelio
Ranzato, Andrew W. Senior, Paul A. Tucker, Ke Yang, Andrew Y. Ng: Large Scale Distributed Deep Networks. NIPS 2012:](https://image.slidesharecdn.com/nextgenerationanalyticswithyarnsparkandgraphlab-140130103832-phpapp01/85/Next-generation-analytics-with-yarn-spark-and-graph-lab-3-320.jpg)
![Iterative ML Algorithms
What are iterative algorithms?
Those that need communication among the computing entities
Examples – neural networks, PageRank algorithms, network traffic analysis
Conjugate gradient descent
Commonly used to solve systems of linear equations
[CB09] tried implementing CG on dense matrices
DAXPY – Multiplies vector x by constant a and adds y.
DDOT – Dot product of 2 vectors
MatVec – Multiply matrix by vector, produce a vector.
1 MR per primitive – 6 MRs per CG iteration, hundreds of MRs per CG
computation, leading to 10 of GBs of communication even for small
matrices.
Other iterative algorithms – fast fourier transform, block tridiagonal
[CB09] C. Bunch, B. Drawert, M. Norman, Mapscale: a cloud environment for scientific computing,
Technical Report, University of California, Computer Science Department, 2009.](https://image.slidesharecdn.com/nextgenerationanalyticswithyarnsparkandgraphlab-140130103832-phpapp01/85/Next-generation-analytics-with-yarn-spark-and-graph-lab-4-320.jpg)
![BDAS: Spark
Transformations/Actions
Map(function f1)
Filter(function f2)
flatMap(function f3)
Union(RDD r1)
Sample(flag, p, seed)
groupByKey(noTasks)
Description
Pass each element of the RDD through f1 in parallel and return the resulting RDD.
Select elements of RDD that return true when passed through f2.
Similar to Map, but f3 returns a sequence to facilitate mapping single input to multiple
outputs.
Returns result of union of the RDD r1 with the self.
Returns a randomly sampled (with seed) p percentage of the RDD.
Can only be invoked on key-value paired data – returns data grouped by value. No. of
parallel tasks is given as an argument (default is 8).
Aggregates result of applying f4 on elements with same key. No. of parallel tasks is the
second argument.
Joins RDD r2 with self – computes all possible pairs for given key.
Joins RDD r3 with self and groups by key.
reduceByKey(function f4,
noTasks)
Join(RDD r2, noTasks)
groupWith(RDD r3,
noTasks)
sortByKey(flag)
Sorts the self RDD in ascending or descending based on flag.
Reduce(function f5)
Aggregates result of applying function f5 on all elements of self RDD
Collect()
Return all elements of the RDD as an array.
Count()
Count no. of elements in RDD
take(n)
Get first n elements of RDD.
First()
Equivalent to take(1)
saveAsTextFile(path)
Persists RDD in a file in HDFS or other Hadoop supported file system at given path.
saveAsSequenceFile(path Persist RDD as a Hadoop sequence file. Can be invoked only on key-value paired RDDs
)
that implement Hadoop writable interface or equivalent.
foreach(function f6)
Run f6 in parallel on elements of self Ankur
[MZ12] Matei Zaharia, Mosharaf Chowdhury, Tathagata Das,RDD. Dave, Justin Ma, Murphy McCauley, Michael
J. Franklin, Scott Shenker, and Ion Stoica. 2012. Resilient distributed datasets: a fault-tolerant abstraction for inmemory cluster computing. In Proceedings of the 9th USENIX conference on Networked Systems Design and
Implementation (NSDI'12). USENIX Association, Berkeley, CA, USA, 2-2.](https://image.slidesharecdn.com/nextgenerationanalyticswithyarnsparkandgraphlab-140130103832-phpapp01/85/Next-generation-analytics-with-yarn-spark-and-graph-lab-9-320.jpg)
![GraphLab: Ideal Engine for Processing Natural Graphs [YL12]
Goals – targeted at machine
learning.
• Model graph dependencies, be
asynchronous, iterative, dynamic.
Data associated with edges
(weights, for instance) and
vertices (user profile data, current
interests etc.).
Update functions – lives on each
vertex
Consistency is important in ML
algorithms (some do not even
converge when there are
inconsistent updates –
collaborative filtering).
• Transforms data in scope of vertex.
• Can choose to trigger neighbours (for
example only if Rank changes drastically)
• Run asynchronously till convergence –
no global barrier.
• GraphLab – provides varying level of
consistency. Parallelism VS consistency.
Implemented several
algorithms, including ALS, Kmeans, SVM, Belief
propagation, matrix
factorization, Gibbs
sampling, SVD, CoEM etc.
• Co-EM (Expectation Maximization)
algorithm 15x faster than Hadoop MR –
on distributed GraphLab, only 0.3% of
Hadoop execution time.
[YL12] Yucheng Low, Danny Bickson, Joseph Gonzalez, Carlos Guestrin, Aapo Kyrola, and Joseph M. Hellerstein. 2012. Distributed
GraphLab: a framework for machine learning and data mining in the cloud. Proceedings of the VLDB Endowment 5, 8 (April 2012), 716-727.](https://image.slidesharecdn.com/nextgenerationanalyticswithyarnsparkandgraphlab-140130103832-phpapp01/85/Next-generation-analytics-with-yarn-spark-and-graph-lab-16-320.jpg)
![GraphLab 2: PowerGraph – Modeling Natural Graphs [1]
GraphLab could not
scale to Altavista web
graph 2002, 1.4B
vertices, 6.7B edges.
Powergraph provides
new way of
partitioning power law
graphs
• Most graph parallel
abstractions assume small
neighbourhoods – low
degree vertices
• But natural graphs
(LinkedIn, Facebook,
Twitter) – power law
graphs.
• Hard to partition power law
graphs, high degree
vertices limit parallelism.
• Edges are tied to
machines, vertices (esp.
high degree ones) span
machines
• Execution split into 3
phases:
• Gather, apply and
scatter.
Triangle counting on
Twitter graph
• Hadoop MR took 423
minutes on 1536 machines
• GraphLab 2 took 1.5
minutes on 1024 cores (64
machines)
[1] Joseph E. Gonzalez, Yucheng Low, Haijie Gu, Danny Bickson, and Carlos Guestrin (2012). "PowerGraph:
Distributed Graph-Parallel Computation on Natural Graphs." Proceedings of the 10th USENIX Symposium
on Operating Systems Design and Implementation (OSDI '12).](https://image.slidesharecdn.com/nextgenerationanalyticswithyarnsparkandgraphlab-140130103832-phpapp01/85/Next-generation-analytics-with-yarn-spark-and-graph-lab-17-320.jpg)
![Future of Spark
•
Domain specific language approach from
Stanford.
•
•
•
Forge [AKS13] – a meta DSL for high
performance DSLs.
40X faster than Spark!
Spark
•
Explore BLAS libraries for efficiency
26
[Arvind K. Sujeeth, Austin Gibbons, Kevin J. Brown, HyoukJoong Lee, Tiark Rompf, Martin Odersky, and Kunle
Olukotun. 2013. Forge: generating a high performance DSL implementation from a declarative specification.
In Proceedings of the 12th international conference on Generative programming: concepts &
experiences (GPCE '13). ACM, New York, NY, USA, 145-154.](https://image.slidesharecdn.com/nextgenerationanalyticswithyarnsparkandgraphlab-140130103832-phpapp01/85/Next-generation-analytics-with-yarn-spark-and-graph-lab-26-320.jpg)
Next generation analytics with yarn, spark and graph lab
- 1. Next Generation Analytics with YARN, Spark and GraphLab Dr. Vijay Srinivas Agneeswaran Director and Head - Big-data R&D Impetus Technologies Inc. 1
- 2. Contents Big Data Computations Hadoop 2.0 (Hadoop YARN) Berkeley data analytics stack PMML Scoring for Naïve Bayes GraphLab • Spark • Spark Streaming • PMML Primer • Naïve Bayes Primer 2
- 3. Big Data Computations Computations/Operations Giant 1 (simple stats) is perfect for Hadoop 1.0. Giants 2 (linear algebra), 3 (Nbody), 4 (optimization) Spark from UC Berkeley is efficient. Interactive/On-the-fly data processing – Storm. Logistic regression, kernel SVMs, conjugate gradient descent, collaborative filtering, Gibbs sampling, alternating least squares. Example is social group-first approach for consumer churn analysis [2] OLAP – data cube operations. Dremel/Drill Data sets – not embarrassingly parallel? Machine vision from Google [3] Deep Learning Artificial Neural Networks Speech analysis from Microsoft Giant 5 – Graph processing – GraphLab, Pregel, Giraph 3 [1] National Research Council. Frontiers in Massive Data Analysis . Washington, DC: The National Academies Press, 2013. [2] Richter, Yossi ; Yom-Tov, Elad ; Slonim, Noam: Predicting Customer Churn in Mobile Networks through Analysis of Social Groups. In: Proceedings of SIAM International Conference on Data Mining, 2010, S. 732-741 [3] Jeffrey Dean, Greg Corrado, Rajat Monga, Kai Chen, Matthieu Devin, Quoc V. Le, Mark Z. Mao, Marc'Aurelio Ranzato, Andrew W. Senior, Paul A. Tucker, Ke Yang, Andrew Y. Ng: Large Scale Distributed Deep Networks. NIPS 2012:
- 4. Iterative ML Algorithms What are iterative algorithms? Those that need communication among the computing entities Examples – neural networks, PageRank algorithms, network traffic analysis Conjugate gradient descent Commonly used to solve systems of linear equations [CB09] tried implementing CG on dense matrices DAXPY – Multiplies vector x by constant a and adds y. DDOT – Dot product of 2 vectors MatVec – Multiply matrix by vector, produce a vector. 1 MR per primitive – 6 MRs per CG iteration, hundreds of MRs per CG computation, leading to 10 of GBs of communication even for small matrices. Other iterative algorithms – fast fourier transform, block tridiagonal [CB09] C. Bunch, B. Drawert, M. Norman, Mapscale: a cloud environment for scientific computing, Technical Report, University of California, Computer Science Department, 2009.
- 5. Hadoop YARN Requirements or 1.0 shortcomings R1: Scalability R2: Multi-tenancy • single cluster limitation • Addressed by Hadoopon-Demand • Security, Quotas R3: Locality awareness R4: Shared cluster utilization • Shuffle of records • Hogging by users • Typed slots R5: Reliability/Availability • Job Tracker bugs R6: Iterative Machine Learning 5 Vinod Kumar Vavilapalli, Arun C Murthy , Chris Douglas, Sharad Agarwal, Mahadev Konar, Robert Evans, Thomas Graves, Jason Lowe , Hitesh Shah, Siddharth Seth, Bikas Saha, Carlo Curino, Owen O'Malley, Sanjay Radia, Benjamin Reed, and Eric Baldeschwieler, “Apache Hadoop YARN: Yet Another Resource Negotiator”, ACM Symposium on Cloud Computing, Oct 2013, ACM Press.
- 7. YARN Internals Application Master • Sends ResourceRequests to the YARN RM • Captures containers, resources per container, locality preferences. YARN RM • Generates tokens and containers • Global view of cluster – monolithic scheduling. Node Manager • Node health monitoring, advertise available resources through heartbeats to RM. 7
- 8. Berkeley Big-data Analytics Stack (BDAS) 8
- 9. BDAS: Spark Transformations/Actions Map(function f1) Filter(function f2) flatMap(function f3) Union(RDD r1) Sample(flag, p, seed) groupByKey(noTasks) Description Pass each element of the RDD through f1 in parallel and return the resulting RDD. Select elements of RDD that return true when passed through f2. Similar to Map, but f3 returns a sequence to facilitate mapping single input to multiple outputs. Returns result of union of the RDD r1 with the self. Returns a randomly sampled (with seed) p percentage of the RDD. Can only be invoked on key-value paired data – returns data grouped by value. No. of parallel tasks is given as an argument (default is 8). Aggregates result of applying f4 on elements with same key. No. of parallel tasks is the second argument. Joins RDD r2 with self – computes all possible pairs for given key. Joins RDD r3 with self and groups by key. reduceByKey(function f4, noTasks) Join(RDD r2, noTasks) groupWith(RDD r3, noTasks) sortByKey(flag) Sorts the self RDD in ascending or descending based on flag. Reduce(function f5) Aggregates result of applying function f5 on all elements of self RDD Collect() Return all elements of the RDD as an array. Count() Count no. of elements in RDD take(n) Get first n elements of RDD. First() Equivalent to take(1) saveAsTextFile(path) Persists RDD in a file in HDFS or other Hadoop supported file system at given path. saveAsSequenceFile(path Persist RDD as a Hadoop sequence file. Can be invoked only on key-value paired RDDs ) that implement Hadoop writable interface or equivalent. foreach(function f6) Run f6 in parallel on elements of self Ankur [MZ12] Matei Zaharia, Mosharaf Chowdhury, Tathagata Das,RDD. Dave, Justin Ma, Murphy McCauley, Michael J. Franklin, Scott Shenker, and Ion Stoica. 2012. Resilient distributed datasets: a fault-tolerant abstraction for inmemory cluster computing. In Proceedings of the 9th USENIX conference on Networked Systems Design and Implementation (NSDI'12). USENIX Association, Berkeley, CA, USA, 2-2.
- 10. BDAS: Use Cases Ooyala Conviva Uses Cassandra for video data personalization. Uses Hive for repeatedly running ad-hoc queries on video data. Pre-compute aggregates VS onthe-fly queries. Optimized ad-hoc queries using Spark RDDs – found Spark is 30 times faster than Hive Moved to Spark for ML and computing views. ML for connection analysis and video streaming optimization. 10 Moved to Shark for on-the-fly queries – C* OLAP aggregate queries on Cassandra 130 secs, 60 ms in Spark Yahoo Advertisement targeting: 30K nodes on Hadoop Yarn Hadoop – batch processing Spark – iterative processing Storm – on-the-fly processing Content recommendation – collaborative filtering
- 11. 11
- 12. PMML Primer Predictive Model Markup Language Developed by DMG (Data Mining Group) PMML offers a standard to define a model, so that a model generated in tool-A can be directly used in tool-B. XML representation of a model. May contain a myriad of data transformations (pre- and post-processing) as well as one or more predictive models. 12
- 13. Naïve Bayes Primer A simple probabilistic classifier based on Bayes Theorem Given features X1,X2,…,Xn, predict a label Y by calculating the probability for all possible Y value Likelihood Normalization Constant Prior 13
- 14. PMML Scoring for Naïve Bayes Wrote a PMML based scoring engine for Naïve Bayes algorithm. This can theoretically be used in any framework for data processing by invoking the API Deployed a Naïve Bayes PMML generated from R into Storm / Spark and Samza frameworks Real time predictions with the above APIs 14
- 15. Header • Version and timestamp • Model development environment information Data Dictionary • Variable types, missing valid and invalid values, Data Munging/Transformation • Normalization, mapping, discretization Model • Model specifi attributes • Mining Schema • Treatment for missing and outlier values • Targets • Prior probability and default • Outputs • List of computer output fields • Post-processing • Definition of model architecture/parameters. 15
- 16. GraphLab: Ideal Engine for Processing Natural Graphs [YL12] Goals – targeted at machine learning. • Model graph dependencies, be asynchronous, iterative, dynamic. Data associated with edges (weights, for instance) and vertices (user profile data, current interests etc.). Update functions – lives on each vertex Consistency is important in ML algorithms (some do not even converge when there are inconsistent updates – collaborative filtering). • Transforms data in scope of vertex. • Can choose to trigger neighbours (for example only if Rank changes drastically) • Run asynchronously till convergence – no global barrier. • GraphLab – provides varying level of consistency. Parallelism VS consistency. Implemented several algorithms, including ALS, Kmeans, SVM, Belief propagation, matrix factorization, Gibbs sampling, SVD, CoEM etc. • Co-EM (Expectation Maximization) algorithm 15x faster than Hadoop MR – on distributed GraphLab, only 0.3% of Hadoop execution time. [YL12] Yucheng Low, Danny Bickson, Joseph Gonzalez, Carlos Guestrin, Aapo Kyrola, and Joseph M. Hellerstein. 2012. Distributed GraphLab: a framework for machine learning and data mining in the cloud. Proceedings of the VLDB Endowment 5, 8 (April 2012), 716-727.
- 17. GraphLab 2: PowerGraph – Modeling Natural Graphs [1] GraphLab could not scale to Altavista web graph 2002, 1.4B vertices, 6.7B edges. Powergraph provides new way of partitioning power law graphs • Most graph parallel abstractions assume small neighbourhoods – low degree vertices • But natural graphs (LinkedIn, Facebook, Twitter) – power law graphs. • Hard to partition power law graphs, high degree vertices limit parallelism. • Edges are tied to machines, vertices (esp. high degree ones) span machines • Execution split into 3 phases: • Gather, apply and scatter. Triangle counting on Twitter graph • Hadoop MR took 423 minutes on 1536 machines • GraphLab 2 took 1.5 minutes on 1024 cores (64 machines) [1] Joseph E. Gonzalez, Yucheng Low, Haijie Gu, Danny Bickson, and Carlos Guestrin (2012). "PowerGraph: Distributed Graph-Parallel Computation on Natural Graphs." Proceedings of the 10th USENIX Symposium on Operating Systems Design and Implementation (OSDI '12).
- 18. PMML Scoring for Naïve Bayes <DataDictionary numberOfFields="4"> <DataField name="Class" optype="categorical" dataType="string"> <Value value="democrat"/> <Value value="republican"/> </DataField> <DataField name="V1" optype="categorical" dataType="string"> <Value value="n"/> <Value value="y"/> </DataField> <DataField name="V2" optype="categorical" dataType="string"> <Value value="n"/> <Value value="y"/> </DataField> <DataField name="V3" optype="categorical" dataType="string"> <Value value="n"/> <Value value="y"/> </DataField> </DataDictionary> (ctd on the next slide) 18
- 19. PMML Scoring for Naïve Bayes <NaiveBayesModel modelName="naiveBayes_Model" functionName="classification" threshold="0.003"> <MiningSchema> <MiningField name="Class" usageType="predicted"/> <MiningField name="V1" usageType="active"/> <MiningField name="V2" usageType="active"/> <MiningField name="V3" usageType="active"/> </MiningSchema> <Output> <OutputField name="Predicted_Class" feature="predictedValue"/> <OutputField name="Probability_democrat" optype="continuous" dataType="double" feature="probability" value="democrat"/> <OutputField name="Probability_republican" optype="continuous" dataType="double" feature="probability" value="republican"/> </Output> <BayesInputs> (ctd on the next page) 19
- 20. PMML Scoring for Naïve Bayes 20 <BayesInputs> <BayesInput fieldName="V1"> <PairCounts value="n"> <TargetValueCounts> <TargetValueCount value="democrat" count="51"/> <TargetValueCount value="republican" count="85"/> </TargetValueCounts> </PairCounts> <PairCounts value="y"> <TargetValueCounts> <TargetValueCount value="democrat" count="73"/> <TargetValueCount value="republican" count="23"/> </TargetValueCounts> </PairCounts> </BayesInput> <BayesInput fieldName="V2"> * <BayesInput fieldName="V3"> * </BayesInputs> <BayesOutput fieldName="Class"> <TargetValueCounts> <TargetValueCount value="democrat" count="124"/> <TargetValueCount value="republican" count="108"/> </TargetValueCounts> </BayesOutput>
- 21. PMML Scoring for Naïve Bayes Definition Of Elements:DataDictionary : Definitions for fields as used in mining models ( Class, V1, V2, V3 ) NaiveBayesModel : Indicates that this is a NaiveBayes PMML MiningSchema : lists fields as used in that model. Class is “predicted” field, V1,V2,V3 are “active” predictor fields Output: Describes a set of result values that can be returned from a model 21
- 22. PMML Scoring for Naïve Bayes Definition Of Elements (ctd .. ) :BayesInputs: For each type of inputs, contains the counts of outputs BayesOutput: Contains the counts associated with the values of the target field 22
- 23. PMML Scoring for Naïve Bayes Sample Input Eg1 - n y y n y y n n n n n n y y y y Eg2 - n y n y y y n n n n n y y y n y • 1st , 2nd and 3rd Columns: Predictor variables ( Attribute “name” in element MiningField ) • Using these we predict whether the Output is Democrat or Republican ( PMML element BayesOutput) 23
- 24. PMML Scoring for Naïve Bayes • 3 Node Xeon Machines Storm cluster ( 8 quad code CPUs, 32 GB RAM, 32 GB Swap space, 1 Nimbus, 2 Supervisors ) Number of records ( in millions ) Time Taken (seconds) 0.1 4 0.4 7 1.0 12 2.0 21 10 129 25 310 24
- 25. PMML Scoring for Naïve Bayes • 3 Node Xeon Machines Spark cluster( 8 quad code CPUs, 32 GB RAM and 32 GB Swap space ) Number of records ( in millions ) Time Taken ( 0.1 1 min 47 sec 0.2 3 min 35 src 0.4 6 min 40 secs 1.0 35 mins 17 sec 10 More than 3 hrs 25
- 26. Future of Spark • Domain specific language approach from Stanford. • • • Forge [AKS13] – a meta DSL for high performance DSLs. 40X faster than Spark! Spark • Explore BLAS libraries for efficiency 26 [Arvind K. Sujeeth, Austin Gibbons, Kevin J. Brown, HyoukJoong Lee, Tiark Rompf, Martin Odersky, and Kunle Olukotun. 2013. Forge: generating a high performance DSL implementation from a declarative specification. In Proceedings of the 12th international conference on Generative programming: concepts & experiences (GPCE '13). ACM, New York, NY, USA, 145-154.
- 27. Conclusion • Beyond Hadoop Map-Reduce philosophy • Optimization and other problems. • Real-time computation • Processing specialized data structures • PMML scoring • Spark for batch computations • Spark streaming and Storm for real-time. 27 • Allows traditional analytical tools/algorithms to be re-used.
- 28. Thank You! email linkedIn • bigdata@impetus.com • www.linkedin.com/company/impetus blogs • blogs.impetus.com twitter • @impetustech