This study investigated the effectiveness of pulsed UV (PUV) light irradiation in damaging Bacillus cereus and Bacillus megaterium, two bacteria relevant to food safety issues. PUV treatment was found to inflict four types of cellular damage that prevented DNA replication. Total reduction of both bacteria was seen at 120P and 160P of PUV treatment. Bacillus megaterium was more sensitive, experiencing total reduction at 80P as well. Increased concentrations of leaked intracellular proteins also demonstrated the damaging effects of PUV. However, protein leakage did not correlate to reductions in viable bacterial counts. Further research is needed to determine the relationship between protein damage and DNA damage from PUV and its effects on pathogenic toxins produced by these bacteria