This document presents a research proposal to identify species variability within the genus Hypotrigona in Ghana. The study aims to sample Hypotrigona bees from four sites based on nesting behavior and use geometric morphometrics, molecular analysis, and multispectral imaging to separate the bees into distinct species. The hypothesis is that nesting behavior has no influence on Hypotrigona species diversity in the study areas. The research justification is that identifying Hypotrigona species will aid in their sustainable cultivation and use. The proposed methodology, timeline, and budget are provided to survey bee nests, analyze samples in the lab, and document genetic diversity of Hypotrigona in Ghana.