Protein modeling with discovery studio
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The document provides an overview of command menus and toolbars in a software application, detailing various menu categories such as file, edit, view, chemistry, structure, sequence, chart, script, and help. Each menu contains specific commands for tasks related to molecular structure management, visualization, and data handling. Additionally, it mentions features for file browsing, selection of molecules, and access to tutorials and help resources.
Protein modeling with discovery studio
- 2. Command menus Toolbars Protocols Hierarchy view Graphics Window Protocols explorer Table view Jobs explorer
- 3. File menu: commands for tasks such as opening files, saving files, printing, and viewing file properties Edit menu: Commands for tasks such as selecting, copying, pasting, and setting preferences View menu: Commands for tasks such as changing the way objects appear in various views and for choosing which views should be shown or hidden Chemistry menu: Commands for taksks that modifythe chemical make up of the molecules Structure menu: commands for tasks such as adding or removing labels, calculating solvent accessibility, cleaning up geometry, adding surface charges and superimposing multiple molecules Sequence menu: commands to manage protein sequences and protein sequence alignments Chart menu: commands to create modify adifferent plot types Script menu: commands that run scripts for visualization, slection, structure editing, and ligand interactions Window: Commands that allow you to control the display of open windows Help: Commands to access the Discovery studio help system and the accelerys website.
- 4. Shortcuts to menu commands Add or hide toolbars from View|Toolbars
- 5. Contain methods that perform quick operations on selected objects and are usually performed locally, as opposed to protocols which are always sent to the server for processing. Tools panel can be made visible from view|Explorers|tools
- 6. Advanced modeling and analysis tasks that are computed by DS server Protocols panel can be visualized from: View|Explorers|Protocols
- 7. TO browse files created by discovery studio and the files in hard drive
- 8. For selecting atoms, amino acids or molecules Selections can be made for 3D- view, Data table and the sequence window too. The hierarchy panel is opened from view|Hierarchy
- 9. Shows data and values associated to the molecular structure The data can be viewed, modified and sorted in the data table Value in gray background can’t be modified Open data table by View|Data table
- 10. NO WWW or printed tutorials Built-in extensive tutorials and help system Can be browsed from Help|Help Topics/Getting Started/Tutorials