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SEVERE ACUTE RESPIRATORY SYNDROME(SARS)
www.lukejerram.com
Department of microbiology 12 January 2015
SEVERE ACUTE RESPIRATORY SYNDROME
www.businesscontinuityinternational.com
Epidemiological approaches
SEVERE ACUTE RESPIRATORY SYNDROME (SARS)
Identification and Analyzation:
• Study design
• Research domain
• Data collection
• Analytical techniques
CLINICAL MICROBIOLOGY
STUDY DESIGN
• Results of epidemiological studies are available as Real time collection
• Upon detection of the outbreak, Studies are carried as:
 Identification of the causative agent
 Investigation of the possible routes and modes of its transmission
 define and validate diagnostic criteria
 Evaluation of candidate treatments
 Forecast the spread of the epidemic
 Devise and evaluate evidence-based prevention
 Monitor policies and strategies.
• The first case of SARS was identified in Asia in Feb. 2003 where 8,098 people became ill and 774
died.
RESEARCH DOMAIN
• The first challenge for epidemiologists is to develop new surveillance and alert tools to detect in
real time.
• Identified more than 300 journal articles covering epidemiological research into the SARS
outbreak
• The researchers, analysis the descriptive epidemiological studies and investigate the
distribution of SARS.
• Analytical epidemiological studies, tried to discover the cause of SARS.
• The median (average) submission-to-acceptance and acceptance-to-publication intervals for
SARS articles submitted during the epidemic were 55 and 77.5 days, respectively.
DATA COLLECTION
• Search bibliographic databases for all published articles on epidemiology.
• Presentation of the entire literature identification–selection process.
• To compare the publication timelines of academic research articles with that of public health
information, they access to,
 The MEDLINE database via PubMed
 The Science Citation Index Expanded and the Social Sciences Citation Index databases
 In case of SARS, Morbidity and Mortality Weekly Report for the Centers for Disease Control and
Prevention (CDC)
 The Weekly Epidemiological Record and Bulletin of the WHO, and Canada Communicable
Disease Report for the Public Health Agency of Canada.
ANALYTICAL TECHNIQUES
• Articles were classified into four large categories:
 Investigation and surveillance
 case management
 prevention and control
 Psychobehavior
• A detailed analysis includes the study designs, and the information given by the authors on the
statistical, informatics, and quality-control methods.
• A data-collection grid was devised:
 For each retained article,
 recording of the study type and design,
 the type and size of the sample population,
 the software used for data management and statistical analyses,
 the quality assurance and quality-control processes described in their Materials and Methods.
 The collected data were coded in a relational database.
• Susceptible individuals are infected by infectious.
• After stage of latency, Infectious individuals lose
infectiousness by death, recovery, or isolation.
• When quarantine is implemented, a proportion, q, of new
infections are quarantined before they become infectious.
• The same proportion of susceptible individuals who were
contacts of infectious persons but were not infected are also
quarantined.
• Susceptible individuals are released from quarantine after
10 days; and that compliance with quarantine is complete.
Mathematical model for SARS transmission.
Typology of Studies
The distributions of the 11 research
domains are as follows-
 52%- case-management
 16%- assessment of diagnostic tests
 23%- Investigation and surveillance
 19%- psychobehavioral studies.
 6%- prevention and control.
AETIOLOGY OF SARS
• A novel coronavirus (SCoV ) is the aetiological agent of severe acute respiratory syndrome (SARS).
• Coronaviruses are characterized by their irregular shape and a crown-like appearance of their
outer envelope.
• An envelope shows the presence of glycoproteins in a lipid bilayer.
• Inside the envelope, there is a nucleocapsid, with the genetic material, positive strand single strand
RNA (+ssRNA), and a few enzymes.
• The detection of coronavirus viruses in small, live wild mammals in a retail market indicates a
route of interspecies transmission.
• Coronaviruses are classified as members of the order Nidovirales.
Investigational approaches
SEVERE ACUTE RESPIRATORY SYNDROME (SARS)
Symptoms-
Hallmark symptoms-
• Cough
• Difficulty in breathing
• Fever greater then 100.4 degrees F
• Other breathing symptoms
Common symptoms -
• Chills and shaking
• Cough starts usually 2-3 days after other symptoms
• Fever
• Muscle aches
• Head aches
Less common symptoms-
• Cough that produces phlegm (sputum)
• Diarrhoea
• Dizziness
• Nausea and vomiting
• Runny nose
• Sore throat
SARS
STAGE 2(LOWER REPIRETORY TRACT PHASE)
• Dry cough
• Dyspenea
• Progressive hypoxemia in many cases
• Respiratory failure that requires mechanical ventilation in some case
SIGNS AND TESTS-
Tests used for diagnosing SARS-
• Arterial blood tests
• Blood clotting tests
• Blood chemistry tests
• Chest x-ray or chest CT scan
• Complete blood count (CBC)
Tests used to quickly identify the virus that causes SARS include-
• Antibody tests for SARS
• Direct isolation of the SARS virus
• Rapid polymerase chain reaction (PCR) test for SARS virus
TREATMENT
• Antibiotics to treat bacteria that cause pneumonia.
• Antiviral medications(although how well they work for the SARS is unknown).
• High doses of steroids to reduce swellings in the lungs.
• Oxygen, breathing support(mechanical ventilation), or chest therapy.
PROGNOSIS
• The death rate from the SARS was 9 to 12 % of those that diagnosed. In people over
age 65, the death rate was higher than 50%. The illness was milder in younger
patients.
• Viruses in the coronavirus family are known for their ability to change (mutate) in
order to spread among humans.
SARS
REFRENCES
Reports and Articles-
• Anatomy of the Epidemiological Literature on the 2003 SARS Outbreaks in Hong Kong and
Toronto: A Time-Stratified Review
• Isolation and Characterization of Viruses Related to the SARS Coronavirus from Animals
inSouthern China.
Web sites-
• www.who.int/csr/sars/diagnosticstests/en
• Pennstatehershey.adams.com
• www.ncbi.nlm.gov/pubmedhealth/
• www.businesscontinuityinternational.com
• www2.hendrix.edu
• www.devicemag.com
• www.cnn.com
THANK YOU

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SARS

  • 1. SEVERE ACUTE RESPIRATORY SYNDROME(SARS) www.lukejerram.com Department of microbiology 12 January 2015
  • 2. SEVERE ACUTE RESPIRATORY SYNDROME www.businesscontinuityinternational.com
  • 3. Epidemiological approaches SEVERE ACUTE RESPIRATORY SYNDROME (SARS)
  • 4. Identification and Analyzation: • Study design • Research domain • Data collection • Analytical techniques CLINICAL MICROBIOLOGY
  • 5. STUDY DESIGN • Results of epidemiological studies are available as Real time collection • Upon detection of the outbreak, Studies are carried as:  Identification of the causative agent  Investigation of the possible routes and modes of its transmission  define and validate diagnostic criteria  Evaluation of candidate treatments  Forecast the spread of the epidemic  Devise and evaluate evidence-based prevention  Monitor policies and strategies. • The first case of SARS was identified in Asia in Feb. 2003 where 8,098 people became ill and 774 died.
  • 6. RESEARCH DOMAIN • The first challenge for epidemiologists is to develop new surveillance and alert tools to detect in real time. • Identified more than 300 journal articles covering epidemiological research into the SARS outbreak • The researchers, analysis the descriptive epidemiological studies and investigate the distribution of SARS. • Analytical epidemiological studies, tried to discover the cause of SARS. • The median (average) submission-to-acceptance and acceptance-to-publication intervals for SARS articles submitted during the epidemic were 55 and 77.5 days, respectively.
  • 7. DATA COLLECTION • Search bibliographic databases for all published articles on epidemiology. • Presentation of the entire literature identification–selection process. • To compare the publication timelines of academic research articles with that of public health information, they access to,  The MEDLINE database via PubMed  The Science Citation Index Expanded and the Social Sciences Citation Index databases  In case of SARS, Morbidity and Mortality Weekly Report for the Centers for Disease Control and Prevention (CDC)  The Weekly Epidemiological Record and Bulletin of the WHO, and Canada Communicable Disease Report for the Public Health Agency of Canada.
  • 8. ANALYTICAL TECHNIQUES • Articles were classified into four large categories:  Investigation and surveillance  case management  prevention and control  Psychobehavior • A detailed analysis includes the study designs, and the information given by the authors on the statistical, informatics, and quality-control methods.
  • 9. • A data-collection grid was devised:  For each retained article,  recording of the study type and design,  the type and size of the sample population,  the software used for data management and statistical analyses,  the quality assurance and quality-control processes described in their Materials and Methods.  The collected data were coded in a relational database.
  • 10. • Susceptible individuals are infected by infectious. • After stage of latency, Infectious individuals lose infectiousness by death, recovery, or isolation. • When quarantine is implemented, a proportion, q, of new infections are quarantined before they become infectious. • The same proportion of susceptible individuals who were contacts of infectious persons but were not infected are also quarantined. • Susceptible individuals are released from quarantine after 10 days; and that compliance with quarantine is complete. Mathematical model for SARS transmission.
  • 11. Typology of Studies The distributions of the 11 research domains are as follows-  52%- case-management  16%- assessment of diagnostic tests  23%- Investigation and surveillance  19%- psychobehavioral studies.  6%- prevention and control.
  • 12. AETIOLOGY OF SARS • A novel coronavirus (SCoV ) is the aetiological agent of severe acute respiratory syndrome (SARS). • Coronaviruses are characterized by their irregular shape and a crown-like appearance of their outer envelope. • An envelope shows the presence of glycoproteins in a lipid bilayer. • Inside the envelope, there is a nucleocapsid, with the genetic material, positive strand single strand RNA (+ssRNA), and a few enzymes. • The detection of coronavirus viruses in small, live wild mammals in a retail market indicates a route of interspecies transmission. • Coronaviruses are classified as members of the order Nidovirales.
  • 13. Investigational approaches SEVERE ACUTE RESPIRATORY SYNDROME (SARS)
  • 14. Symptoms- Hallmark symptoms- • Cough • Difficulty in breathing • Fever greater then 100.4 degrees F • Other breathing symptoms Common symptoms - • Chills and shaking • Cough starts usually 2-3 days after other symptoms • Fever • Muscle aches • Head aches
  • 15. Less common symptoms- • Cough that produces phlegm (sputum) • Diarrhoea • Dizziness • Nausea and vomiting • Runny nose • Sore throat
  • 17. STAGE 2(LOWER REPIRETORY TRACT PHASE) • Dry cough • Dyspenea • Progressive hypoxemia in many cases • Respiratory failure that requires mechanical ventilation in some case
  • 18. SIGNS AND TESTS- Tests used for diagnosing SARS- • Arterial blood tests • Blood clotting tests • Blood chemistry tests • Chest x-ray or chest CT scan • Complete blood count (CBC)
  • 19. Tests used to quickly identify the virus that causes SARS include- • Antibody tests for SARS • Direct isolation of the SARS virus • Rapid polymerase chain reaction (PCR) test for SARS virus
  • 20. TREATMENT • Antibiotics to treat bacteria that cause pneumonia. • Antiviral medications(although how well they work for the SARS is unknown). • High doses of steroids to reduce swellings in the lungs. • Oxygen, breathing support(mechanical ventilation), or chest therapy.
  • 21. PROGNOSIS • The death rate from the SARS was 9 to 12 % of those that diagnosed. In people over age 65, the death rate was higher than 50%. The illness was milder in younger patients. • Viruses in the coronavirus family are known for their ability to change (mutate) in order to spread among humans.
  • 22. SARS
  • 23. REFRENCES Reports and Articles- • Anatomy of the Epidemiological Literature on the 2003 SARS Outbreaks in Hong Kong and Toronto: A Time-Stratified Review • Isolation and Characterization of Viruses Related to the SARS Coronavirus from Animals inSouthern China. Web sites- • www.who.int/csr/sars/diagnosticstests/en • Pennstatehershey.adams.com • www.ncbi.nlm.gov/pubmedhealth/ • www.businesscontinuityinternational.com • www2.hendrix.edu • www.devicemag.com • www.cnn.com

Editor's Notes

  • #19: our health care provider may hear abnormal lung sounds while listening to your chest with a stethoscope. In most people with SARS, changes on a chest x-ray or chest CT show pneumonia, which is typical with SARS.
  • #20: All current tests have some limitations. They may not be able to easily identify a SARS case during the first week of the illness, when it is most important.