“The Book of Why”.ppt
- 1. The Book of Why “For Epidemiologists” George Davey Smith MRC Integrative Epidemiology Unit University of Bristol @mendel_random
- 2. Structure of talk • Value of DAG theory to epidemiology • The reality of use of DAGs in epidemiology • Getting Wright wrong • Where does “background knowledge” come from? • Consequences of believing the DAGs
- 8. Unequivocal gains to epidemiology from employing DAGs • Structure of biases
- 9. Heavy alcohol consumption “protects” against stroke in the American Cancer Society volunteer cohort Health alcohol “Poor health” consumption Heavy r = negative Alcoholic - - - - - - “Poor health” consumptiom Volunteer - VE - VE Ebrahim S, Davey Smith G. Should we always deliberately be non-representative? Int. J. Epidemiol. 2013;42:1022-1026. Volunteer - VE - VE
- 10. Davey Smith and Ebrahim IJE 2004
- 11. Arthur Cecil Pigou 1877 - 1959 Not the “fourth man” …
- 12. Pigou AC. Alcoholism and Heredity. Westminster Gazette 2nd February 1911 reprinted in Int J Epidemiol.
- 14. Unequivocal gains to epidemiology from employing DAGs • Structure of biases .. and making these transportable
- 15. Pearl J. The new challenge, 1997
- 17. Unequivocal gains to epidemiology from employing DAGs • Structure of biases .. and making these transportable • Providing an explicit rationale for constructing adjustment sets
- 18. Unequivocal gains to epidemiology from employing DAGs • Structure of biases .. and making these transportable • Providing an explicit rationale for constructing adjustment sets • Lead to an explicit presentation of some of the assumptions the researcher holds
- 19. Unequivocal gains to epidemiology from employing DAGs • Structure of biases .. and making these transportable • Providing an explicit rationale for constructing adjustment sets • Lead to an explicit presentation of some of the assumptions the researcher holds • Contributing to methodological developments with abstract DAGs
- 20. Sjolander et al, Cofounders, mediators or colliders: what types of shared covariates does a sibling comparison design control for? Epidemiology 2017;28:540-7 X = exposure Y = outcome U= eg parental genotype Family environment may be M or W
- 21. Breitling LP. dagR: A Suite of R Functions for Directed Acyclic Graphs. Epidemiology 2010;21:586-587 The reality of the use of DAGs in Epidemiology
- 22. Textor J et al. DAGitty: A graphical tool for analysing causal diagrams. Epidemiology 2011;22:745
- 23. “Directed Acyclic Graphs1 and 10 percent change in estimate procedures were used to identify covariates for inclusion in multivariable models; these included age, education, living with a partner, parity, and history of preterm birth”. 1. Textor J, Hardt J, Knuppel S. Dagitty: A graphical tool for analyzing causal diagrams. Epidemiology 2011;22(5):745. Barcelona de Mendoza V et al. Acculturation and Intention to Breastfeed among a Population of Predominantly Puerto Rican Women. Birth 2016;43:78-85
- 24. Bandoli G et al. Constructing Causal Diagrams for Common Perinatal Outcomes: Benefits, Limitations and Motivating Examples with Maternal Antidepressant Use in Pregnancy. Paediatric and Perinatal Epidemiology 2016;30:521-528.
- 25. Glymour MM. Using causal diagrams to understand common problems in social epidemiology. In: Oakes JM, Kaufman JS (eds). Methods in Social Epidemiology. San Francisco, CA: Josey-Bass, 2006;393–428
- 26. Glymour MM. Using causal diagrams to understand common problems in social epidemiology. In: Oakes JM, Kaufman JS (eds). Methods in Social Epidemiology. San Francisco, CA: Josey-Bass, 2006;393–428 “Under the graphical criteria, one should not include mother’s diabetes status as a covariate”
- 27. “A structural causal model provides a tool for understanding whether background knowledge, combined with the observed data, is sufficient to allow a causal question to be translated into a statistical estimand, and, if not, what additional data or assumptions are needed.” Petersen ML et al. Causal Models and Learning from Data: Integrating Causal Modeling and Statistical Estimation. Epidemiology 2014;25:418-426. “In many cases, rigorous application of a formal causal framework forces us to conclude that existing knowledge and data are insufficient to claim identifiability—in itself a useful contribution.”
- 28. But what of the assumptions of “causal DAGs” and causal modelling approaches?
- 29. Lagani V et al. Probabilistic Computational Causal Discovery for Systems Biology. In: Geris L, Gomez-Cabrero D (Eds). Uncertainty in Biology Volume 17 of the series. Studies in Mechanobiology, Tissue Engineering and Biomaterials pp 33-73; 2015 No measurement error: the variables are measured without measurement error. This is a subtle assumption that is required to learn Causal Bayesian Networks (CBNs), often not realized by practitioners who apply these techniques.
- 30. Oh yeah … and there’s “no unmeasured confounding” too …
- 31. No measurement error + No unmeasured confounding = Not epidemiological data
- 32. Sewall Wright on path analysis, causation and mediation Getting Wright Wrong
- 33. James Crow’s NAS Biographical Memoir of Sewall Wright “He read his father’s math books and learned to extract cube roots before entering school, a skill that he said brought him instant, lasting unpopularity with the other students”
- 34. Powell S. The Book of Why: The New Science of Cause and Effect. Journal of MultiDisciplinary Evaluation. 2018;14:47-54
- 35. Powell S. The Book of Why: The New Science of Cause and Effect. Journal of MultiDisciplinary Evaluation. 2018;14:47-54 “.. A rebuttal published in 1921 by one Henry Niles, a student of American Statistician Raymond Pearl (no relation), who in turn was a student of Karl Pearson, the godfather of statistics” FROM “THE BOOK OF WHY”
- 37. Powell S. The Book of Why: The New Science of Cause and Effect. Journal of MultiDisciplinary Evaluation. 2018;14:47-54
- 38. “A prominent SEM researcher once asked me, “Under what conditions can we give causal interpretation to identified structural coefficients?” I thought this colleague was joking. As a faithful reader of Wright (1921) and Haavelmo (1943), I had come to believe that the answer is simply, “Always!...” Pearl J. TETRAD and SEM. Multivariate Behavioural Research 1998;33:119-128.
- 39. Wright S. The Genetical Structure of Populations. Annals of Eugenics 1949;15:323-354. “The rate of decrease of heterozygosis in systems of mating more complicated than self-fertilization was first worked out from the recurrence relation between successive generations independently by Jennings (1914) and Fish (1914) for brother-sister mating and by Jennings (1916) for some others. The present writer, who had assisted Fish in his calculations, found a simpler way of finding this quantity, the method of path coefficients, based on the correlation between uniting gametes (Wright, 1921).”
- 40. Random phenotypic variance? Piebald pattern in guinea pigs Sewall Wright 1921
- 41. Wright S. The theory of path coefficients: A reply to Niles’s criticism. Genetics 1923;8:239
- 42. And the same said in many, many other places “The hypothesis that heredity is Mendelian may usually be used safely as information external to a system of correlations among relatives” “.. external information of a most precise sort is provided by the pedigree and by the practical universality of Mendelian heredity”
- 43. It seems to the writer that what Wright was striving for, when he formulated path analysis, first, was progress up the ladder from descriptive to tangential to functional and that the fact that he halted at the tangential level was an accident – an accident of the temper of the times and of the problems which happened to concern him. It would seem appropriate to credit him with striving for a functional method and to classify the halt at the tangential level as temporary and of minor importance. J Tukey – In: Statistics and Mathematics in Biology. The Iowa State College Press, Iowa 1954.
- 44. “Genetics has but one modest framework for paths. In contrast according to current journals sociologists keep discovering new fundamental path frameworks every month; and sociological graduate students are required routinely to hand in, as individual class exercises, new discoveries equalling Gregor Mendel’s.” Guttman L. What is Not What in Statistics. Journal of the Royal Statistical Society. Series D. 1977;26:81-107 Path analysis does not analyse non- genetic paths
- 45. Lehmann EL. Fisher, Neyman, and the Creation of Classical Statistics. Springer 2011. Letter from Egon Pearson to Jerzy Neyman
- 46. Where does background knowledge come from?
- 48. Pearl J. Trygve Haavelmo and the emergence of causal calculus. Econometric Theory 2015;31:152-179.
- 49. Pearl J. Causal diagrams for empirical research. Biometrika 1995;82:669-688.
- 50. “As with regression models, causal models in observational health and social science (OHSS) are always false. Because we can never know we have a correct model (and in fact in OHSS we can’t even know if we are very close), to say G is causal if unconfounded is a scientifically vacuous definition: It is saying the graph is causal if the causal model it represents is correct.” Greenland S. Overthrowing the Tyranny of Null Hypotheses Hidden in Causal Diagrams. In Dechter R et al (eds). Heuristic, Probabilities, and Causality: A Tribute to Judea Pearl. College Press 2010:365-382
- 51. Causality: it’s the new thing ..
- 53. Goldsmith JR. Epidemiological approach to multiple factor interactions in pulmonary disease: the potential usefulness of path analysis. Annals of the New York Academy of Sciences 1974;221:361-375
- 54. Consequences of believing the DAGs
- 55. Introduction of front-door criteria Pearl J. Mediating Instrumental Variables. Technical Report 1993.
- 56. Judea Pearl & Dana Mackenzie. The Book of Why: The New Science of Cause and Effect. Penguin, UK. 2018.
- 57. Pearl J. Turing Award Winner, Longtime ASA Member Publishes The Book of Why. AMSTAT News August 2018
- 58. Corrigan-Curay J et al. Real-World Evidence and Real-World Data for Evaluating Drug Safety and Effectiveness. JAMA 2018;9:867-868.
- 59. Pearl J. Rejoinder to Discussions of “Causal diagrams for empirical research”. Biometrika 1995;82:702-710.
- 61. From “Causal inference in statistics: a primer” Judea Pearl et al “It proves the enormous, even revelatory, power that causal graphs have in not merely representing, but actually discovering causal information”
- 62. George Orwell wrote that language could be used to give the “. . . appearance of solidity to pure wind.” It is disturbing that the language of “causal modeling” is being used to bestow the solidity of the complex process of causal inference upon mere statistical analysis of observational data. Levine B. Causal Models. Epidemiology 2009;20:931.
- 63. COI: I am old and time-expired
- 64. Davey Smith G. Post-Modern Epidemiology: when methods meet matter, Am J Epidemiol 2019, in press