Towards open and reproducible neuroscience in the age of big data

Towards open and
reproducible neuroscience
in the age of big data
Chris Gorgolewski
Center for Reproducible Neuroscience
Stanford University

OPENFMRI DATA REUSE
Gorgolewski et. al 2015

STUDIES SHARING DATA HAVE HIGHER
STATISTICAL QUALITY
Wicherts JM, Bakker M, Molenaar D (2011) Willingness to Share Research
Data Is Related to the Strength of the Evidence and the Quality of Reporting of
Statistical Results. PLoS ONE 6(11): e26828. doi:

SHARING DATA IS RELATED TO HIGHER
CITATION RATE
PIWOWAR, DAY & FRIDSMA (2007) Piwowar & Vision(2013)

MEET PROF. SMITH
BIDS.NEUROIMAGING.I
O

MEET MIKE
BIDS.NEUROIMAGING.I
O

GETTING LOST IN YOUR DATA
BIDS.NEUROIMAGING.I
O

•
•
•
BIDS.NEUROIMAGING.I
O

•
•
http://www.nature.com/news/brain-imaging-fmri-2-0-1.10365
BIDS.NEUROIMAGING.I
O

1.
2.
3.
BIDS.NEUROIMAGING.I
O

1.
2.
3.
4.
5.
BIDS.NEUROIMAGING.I
O

•
•
•
•
BIDS.NEUROIMAGING.I
O
Gorgolewski et al. (2016) Scientific Data

participant_id age sex
sub-001 34 M
sub-002 12 F
sub-003 33 F
BIDS.NEUROIMAGING.I
O

{
"RepetitionTime": 3.0,
"EchoTime": 0.03,
"FlipAngle": 78,
"SliceTiming": [0.0, 0.2, 0.4, …],
"MultibandAccellerationFactor": 4,
"PhaseEncodingDirection": "j-"
}
BIDS.NEUROIMAGING.I
O

incf.github.io/bids-validator/
BIDS.NEUROIMAGING.I
O

PROF. SMITH(2030)
BIDS.NEUROIMAGING.I
O

• QAP
• MRIQC
• FMRIPREP
• AUTOMATIC ANALYSIS
• OPENFMRI2BIDS
• BIDS2ISATAB
• DCM2NIIX
• DICM2NII
• OPENFMRI
• BIDSTO3COL
• BIDS2NDA
• AFNI BIDS-TOOLS
• HEUDICONV
• DCM2BIDS
• C-PAC
• BRAINSTORM

BIDS-
APPS.NEUROIMAGING.IO
•
•
•
•

•
•
•
•
BIDS-

•
•
•
•
•
•
BIDS-

BIDS-
GORGOLEWSKI ET. AL 2017

•
•
•
FMRIPREP.READTHEDOCS.I
O

•
•
•
•
FMRIPREP.READTHEDOCS.I
O

MAKING MORE DATA ACCESSIBLE
TO MORE RESEARCHERS
Poldrack and Gorgolewski, 2014

•
•
•
•
•
•
•
•

ACKNOWLEDGMENTS
The Poldrack Lab @ Stanford
Data Sharing Task Force

ACKNOWLEDGMENTS
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•






 HTTP://WWW.HUMANBRAINMAPPING.ORG/I4A/PAGES/INDEX.CFM?PAGEID=3
731
 HTTP://WWW.OHBMBRAINMAPPINGBLOG.COM/BLOG/OHBM-REPLICATION-
AWARD-QA-WITH-CHRIS-GORGOLEWSKI

•
•
•
•
•
•
•
•
•
•
•
•

Towards open and reproducible neuroscience in the age of big data

More Related Content

What's hot (19)

Viewers also liked (18)

Similar to Towards open and reproducible neuroscience in the age of big data (20)

More from Krzysztof Gorgolewski (13)

Recently uploaded (20)

Towards open and reproducible neuroscience in the age of big data