The document discusses various methods for securing a web application from common vulnerabilities like SQL injection, cross-site scripting (XSS), and cross-site request forgery (CSRF). It recommends input filtering user-provided data, output encoding data returned to users, using prepared statements for database queries, adding anti-CSRF tokens to forms, and regularly updating systems and security patches. The document also stresses secure coding practices like auditing code for security issues and protecting source code and configuration files.