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©2015 Waters Corporation 1
Understanding Complex Materials using
High Definition Mass Spectrometry
Eleanor Riches, Ph.D.
Principal Scientist
03 November 2014
©2015 Waters Corporation 2
Presentation Overview
Enhanced Structural Characterisation
Comparing Complex Samples
Overview of the SYNAPT G2-Si HDMS Instrument
Introduction to Ion Mobility & Collisional Cross Section
CCS: A Useful Identification Point
©2015 Waters Corporation 3
The SYNAPT G2-Si HDMS Instrument
©2015 Waters Corporation 4
SYNAPT G2-Si HDMS Technology:
Ion sources
©2015 Waters Corporation 5
SYNAPT G2-Si HDMS Technology:
Ion sources
MALDI
ESI
APCI
APPI
APGC
ASAP
DART
DESI
LDTD
©2015 Waters Corporation 6
SYNAPT G2-Si HDMS Technology:
QuanToF
50k FWHM
©2015 Waters Corporation 7
SYNAPT G2-Si HDMS Technology:
Ion mobility separation
©2015 Waters Corporation 8
Ion Mobility and
Collisional Cross Section (CCS)
©2015 Waters Corporation 9
Turbomolecular
Pumps
Trap IMS Transfer
Gate
N2
Ar
Ions
In
Ions
Out
0.05mbar
He
0.05mbar 3mbar
Travelling Wave ion mobility separation
©2015 Waters Corporation 10
C16H26
Branched
structure
C16H26
Straight chain
structure
C7H8
Travelling Wave ion mobility separation
©2015 Waters Corporation 11
C16H26
Branched
structure
C16H26
Straight chain
structure
C7H8
Travelling Wave ion mobility separation
©2015 Waters Corporation 12
C16H26
Branched
structure
C16H26
Straight chain
structure
C7H8
Travelling Wave ion mobility separation
©2015 Waters Corporation 13
Collision Cross Section (CCS)
 Ion mobility MS measures an ion’s DRIFT TIME
— Applying a calibration gives us COLLISION CROSS SECTION (CCS),
a key physicochemical property of the species
Polyalanine
calibration
CCS value
Measured
Drift Time
©2015 Waters Corporation 14
Collision Cross Section (CCS)
 Ion mobility MS measures an ion’s DRIFT TIME
— Applying a calibration gives us COLLISION CROSS SECTION (CCS),
a key physicochemical property of the species
 Time-of-Flight MS measures an ion’s FLIGHT TIME
— Applying a calibration gives us MASS TO CHARGE RATIO (m/z),
and hence the ion’s mass: a key physicochemical property of the species
Polyalanine
calibration
CCS value
Measured
Drift Time
Sodium formate
calibration
m/z value
Measured
Flight Time
©2015 Waters Corporation 15
What is CCS?
• Chemical
Structure
(mass, size)
• 3-dimensional
Conformation
(shape)
Precise
Physicochemical
Property of an ion
Important
differentiating
Characteristic of
an ion
©2015 Waters Corporation 16
CCS: A Useful Identification Point
©2015 Waters Corporation 17
CCS: a useful identification point
Matrix Rt (mins) %Error
Pear 7.48 1.73
Boscalid expected retention time (Rt) 7.35 mins (standard):
Matrix dependent retention time shifts
©2015 Waters Corporation 18
CCS: a useful identification point
Matrix Rt (mins) %Error
Pear 7.48 1.73
Mandarin 7.55 2.65
Boscalid expected retention time (Rt) 7.35 mins (standard):
Matrix dependent retention time shifts
©2015 Waters Corporation 19
CCS: a useful identification point
Matrix Rt (mins) %Error
Pear 7.48 1.73
Mandarin 7.55 2.65
Leek 7.68 4.30
Boscalid expected retention time (Rt) 7.35 mins (standard):
Matrix dependent retention time shifts
©2015 Waters Corporation 20
CCS: a useful identification point
Matrix Rt (mins) %Error
Pear 7.48 1.73
Mandarin 7.55 2.65
Leek 7.68 4.30
Ginger 7.78 5.53
Boscalid expected retention time (Rt) 7.35 mins (standard):
Matrix dependent retention time shifts
©2015 Waters Corporation 21
CCS: a useful identification point
Without CCS Without CCS With CCS
m/z tolerance
+/-
5ppm 10ppm 10ppm
Rt tolerance +/- 2.5% 2.5% 2.5%
CCS tolerance
+/-
- - 2%
Correct IDs 7 8 8
False negatives 1 0 0
False positives 1 1 0
Using CCS filtering: 0% false positives and false negatives
observed for pesticide formulation
With thanks to Dr. Mike McCullagh
©2015 Waters Corporation 22
Enhanced Structural Characterisation
©2015 Waters Corporation 23
m/z
Drift time
Using the IMS region for fragmentation
Precursor ions
separated
by IMS
m/z
Drift time
Precursor and
product ions
are TIME ALIGNED
©2015 Waters Corporation 24
m/z
Drift time
m/z
Drift time
1st & 2nd generation
product ions
are TIME ALIGNED
Ion
isolated
by
quadrupole
Product ions
separated
by IMS
Precursor ion
FRAGMENTED
Using the IMS region for fragmentation
©2015 Waters Corporation 25
BDAVBi
Blue Dopant
C52H40N2
693
693
616
448
525
256
168
MS Spectrum
MS/MS Spectrum
356
N
N
Analysis of BDAVBi blue dopant
©2015 Waters Corporation 26
Analysis of BDAVBi blue dopant
OLED01_045.raw : 1
168
356
256
448
616
525
693
Drift time (Bins)
m/z
Separation of isomers
N
N
Ion
isolated
by
quadrupole
©2015 Waters Corporation 27
Analysis of BDAVBi blue dopant
OLED01_047.raw : 1
A
A B
B
C
C D
D
Ion
isolated
by
quadrupole
©2015 Waters Corporation 28
MS/MS in petroleomics applications
©2015 Waters Corporation 29
MS/MS in petroleomics applications
With thanks to Dr. Priscila Lalli,
visiting researcher, NHMFL, FSU
©2015 Waters Corporation 30
MS/MS in petroleomics applications
[C13H22S + 107Ag]+, DBE = 3
Ion
isolated
by
quadrupole
-H2S
-H2S
-C3H4
-CH2S
SHR
S
R
With thanks to Dr. Priscila Lalli,
visiting researcher, NHMFL, FSU
©2015 Waters Corporation 31
MS/MS in petroleomics applications
S1 Class, DBE = 3
With thanks to Dr. Priscila Lalli,
visiting researcher, NHMFL, FSU
©2015 Waters Corporation 32
Comparing Complex Samples
©2015 Waters Corporation 33
Ion mobility data:
Compared using HDMS Compare
©2015 Waters Corporation 34
Asphaltene Sample 1
Ion mobility data:
Two different asphaltene samples
Asphaltene Sample 2
©2015 Waters Corporation 35
Ion mobility data:
Compared using HDMS Compare
©2015 Waters Corporation 36
Ion mobility data:
Compared using HDMS Compare
©2015 Waters Corporation 37
PMMA infusion, ESI-SYNAPT G2
With thanks to Kirsten Craven
Ion mobility data:
Two different PMMA polymer samples
©2015 Waters Corporation 38
Polymerix
With thanks to Kirsten Craven
Ion mobility data:
Two different PMMA polymer samples
©2015 Waters Corporation 39
With thanks to Kirsten Craven
Ion mobility data:
Two different PMMA polymer samples
©2015 Waters Corporation 40
PetroOrg:
Petroleum industry-specific software
With thanks to Dr. Yuri E. Corilo,
Developer of PetroOrg software, FFI & Omics LLC
©2015 Waters Corporation 41
PetroOrg:
Petroleum industry-specific software
Example of a Carbon Number vs DBE plot
for the N1 Class
Example of a Van Krevelen diagram
for the N1 Class
With thanks to Dr. Yuri E. Corilo,
Developer of PetroOrg software, FFI & Omics LLC
©2015 Waters Corporation 42
Summary
 Waters’ SYNAPT G2-Si HDMS instrument, with its quadrupole –
ion mobility-ToF geometry, is an unrivalled tool for the
characterisation of complex materials
 The orthogonal separation offered by ion mobility enables
powerful structural elucidation workflows
 Collisional Cross Section (CCS) measurements provide valuable
confirmatory data points
 Ion mobility-specific software allows interactive data evaluation
and processing
 Partnering and collaborating with key thought leaders has
resulted in the development of unique petroleum industry-
specific data processing software
©2015 Waters Corporation 43
Thank you
for your attention!
Follow Chemical Materials on Twitter @WatersChemical
谢谢 どうも有難うございます。 정말 감사합니다

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Understanding complex materials using high definition mass spectrometry

  • 1. ©2015 Waters Corporation 1 Understanding Complex Materials using High Definition Mass Spectrometry Eleanor Riches, Ph.D. Principal Scientist 03 November 2014
  • 2. ©2015 Waters Corporation 2 Presentation Overview Enhanced Structural Characterisation Comparing Complex Samples Overview of the SYNAPT G2-Si HDMS Instrument Introduction to Ion Mobility & Collisional Cross Section CCS: A Useful Identification Point
  • 3. ©2015 Waters Corporation 3 The SYNAPT G2-Si HDMS Instrument
  • 4. ©2015 Waters Corporation 4 SYNAPT G2-Si HDMS Technology: Ion sources
  • 5. ©2015 Waters Corporation 5 SYNAPT G2-Si HDMS Technology: Ion sources MALDI ESI APCI APPI APGC ASAP DART DESI LDTD
  • 6. ©2015 Waters Corporation 6 SYNAPT G2-Si HDMS Technology: QuanToF 50k FWHM
  • 7. ©2015 Waters Corporation 7 SYNAPT G2-Si HDMS Technology: Ion mobility separation
  • 8. ©2015 Waters Corporation 8 Ion Mobility and Collisional Cross Section (CCS)
  • 9. ©2015 Waters Corporation 9 Turbomolecular Pumps Trap IMS Transfer Gate N2 Ar Ions In Ions Out 0.05mbar He 0.05mbar 3mbar Travelling Wave ion mobility separation
  • 10. ©2015 Waters Corporation 10 C16H26 Branched structure C16H26 Straight chain structure C7H8 Travelling Wave ion mobility separation
  • 11. ©2015 Waters Corporation 11 C16H26 Branched structure C16H26 Straight chain structure C7H8 Travelling Wave ion mobility separation
  • 12. ©2015 Waters Corporation 12 C16H26 Branched structure C16H26 Straight chain structure C7H8 Travelling Wave ion mobility separation
  • 13. ©2015 Waters Corporation 13 Collision Cross Section (CCS)  Ion mobility MS measures an ion’s DRIFT TIME — Applying a calibration gives us COLLISION CROSS SECTION (CCS), a key physicochemical property of the species Polyalanine calibration CCS value Measured Drift Time
  • 14. ©2015 Waters Corporation 14 Collision Cross Section (CCS)  Ion mobility MS measures an ion’s DRIFT TIME — Applying a calibration gives us COLLISION CROSS SECTION (CCS), a key physicochemical property of the species  Time-of-Flight MS measures an ion’s FLIGHT TIME — Applying a calibration gives us MASS TO CHARGE RATIO (m/z), and hence the ion’s mass: a key physicochemical property of the species Polyalanine calibration CCS value Measured Drift Time Sodium formate calibration m/z value Measured Flight Time
  • 15. ©2015 Waters Corporation 15 What is CCS? • Chemical Structure (mass, size) • 3-dimensional Conformation (shape) Precise Physicochemical Property of an ion Important differentiating Characteristic of an ion
  • 16. ©2015 Waters Corporation 16 CCS: A Useful Identification Point
  • 17. ©2015 Waters Corporation 17 CCS: a useful identification point Matrix Rt (mins) %Error Pear 7.48 1.73 Boscalid expected retention time (Rt) 7.35 mins (standard): Matrix dependent retention time shifts
  • 18. ©2015 Waters Corporation 18 CCS: a useful identification point Matrix Rt (mins) %Error Pear 7.48 1.73 Mandarin 7.55 2.65 Boscalid expected retention time (Rt) 7.35 mins (standard): Matrix dependent retention time shifts
  • 19. ©2015 Waters Corporation 19 CCS: a useful identification point Matrix Rt (mins) %Error Pear 7.48 1.73 Mandarin 7.55 2.65 Leek 7.68 4.30 Boscalid expected retention time (Rt) 7.35 mins (standard): Matrix dependent retention time shifts
  • 20. ©2015 Waters Corporation 20 CCS: a useful identification point Matrix Rt (mins) %Error Pear 7.48 1.73 Mandarin 7.55 2.65 Leek 7.68 4.30 Ginger 7.78 5.53 Boscalid expected retention time (Rt) 7.35 mins (standard): Matrix dependent retention time shifts
  • 21. ©2015 Waters Corporation 21 CCS: a useful identification point Without CCS Without CCS With CCS m/z tolerance +/- 5ppm 10ppm 10ppm Rt tolerance +/- 2.5% 2.5% 2.5% CCS tolerance +/- - - 2% Correct IDs 7 8 8 False negatives 1 0 0 False positives 1 1 0 Using CCS filtering: 0% false positives and false negatives observed for pesticide formulation With thanks to Dr. Mike McCullagh
  • 22. ©2015 Waters Corporation 22 Enhanced Structural Characterisation
  • 23. ©2015 Waters Corporation 23 m/z Drift time Using the IMS region for fragmentation Precursor ions separated by IMS m/z Drift time Precursor and product ions are TIME ALIGNED
  • 24. ©2015 Waters Corporation 24 m/z Drift time m/z Drift time 1st & 2nd generation product ions are TIME ALIGNED Ion isolated by quadrupole Product ions separated by IMS Precursor ion FRAGMENTED Using the IMS region for fragmentation
  • 25. ©2015 Waters Corporation 25 BDAVBi Blue Dopant C52H40N2 693 693 616 448 525 256 168 MS Spectrum MS/MS Spectrum 356 N N Analysis of BDAVBi blue dopant
  • 26. ©2015 Waters Corporation 26 Analysis of BDAVBi blue dopant OLED01_045.raw : 1 168 356 256 448 616 525 693 Drift time (Bins) m/z Separation of isomers N N Ion isolated by quadrupole
  • 27. ©2015 Waters Corporation 27 Analysis of BDAVBi blue dopant OLED01_047.raw : 1 A A B B C C D D Ion isolated by quadrupole
  • 28. ©2015 Waters Corporation 28 MS/MS in petroleomics applications
  • 29. ©2015 Waters Corporation 29 MS/MS in petroleomics applications With thanks to Dr. Priscila Lalli, visiting researcher, NHMFL, FSU
  • 30. ©2015 Waters Corporation 30 MS/MS in petroleomics applications [C13H22S + 107Ag]+, DBE = 3 Ion isolated by quadrupole -H2S -H2S -C3H4 -CH2S SHR S R With thanks to Dr. Priscila Lalli, visiting researcher, NHMFL, FSU
  • 31. ©2015 Waters Corporation 31 MS/MS in petroleomics applications S1 Class, DBE = 3 With thanks to Dr. Priscila Lalli, visiting researcher, NHMFL, FSU
  • 32. ©2015 Waters Corporation 32 Comparing Complex Samples
  • 33. ©2015 Waters Corporation 33 Ion mobility data: Compared using HDMS Compare
  • 34. ©2015 Waters Corporation 34 Asphaltene Sample 1 Ion mobility data: Two different asphaltene samples Asphaltene Sample 2
  • 35. ©2015 Waters Corporation 35 Ion mobility data: Compared using HDMS Compare
  • 36. ©2015 Waters Corporation 36 Ion mobility data: Compared using HDMS Compare
  • 37. ©2015 Waters Corporation 37 PMMA infusion, ESI-SYNAPT G2 With thanks to Kirsten Craven Ion mobility data: Two different PMMA polymer samples
  • 38. ©2015 Waters Corporation 38 Polymerix With thanks to Kirsten Craven Ion mobility data: Two different PMMA polymer samples
  • 39. ©2015 Waters Corporation 39 With thanks to Kirsten Craven Ion mobility data: Two different PMMA polymer samples
  • 40. ©2015 Waters Corporation 40 PetroOrg: Petroleum industry-specific software With thanks to Dr. Yuri E. Corilo, Developer of PetroOrg software, FFI & Omics LLC
  • 41. ©2015 Waters Corporation 41 PetroOrg: Petroleum industry-specific software Example of a Carbon Number vs DBE plot for the N1 Class Example of a Van Krevelen diagram for the N1 Class With thanks to Dr. Yuri E. Corilo, Developer of PetroOrg software, FFI & Omics LLC
  • 42. ©2015 Waters Corporation 42 Summary  Waters’ SYNAPT G2-Si HDMS instrument, with its quadrupole – ion mobility-ToF geometry, is an unrivalled tool for the characterisation of complex materials  The orthogonal separation offered by ion mobility enables powerful structural elucidation workflows  Collisional Cross Section (CCS) measurements provide valuable confirmatory data points  Ion mobility-specific software allows interactive data evaluation and processing  Partnering and collaborating with key thought leaders has resulted in the development of unique petroleum industry- specific data processing software
  • 43. ©2015 Waters Corporation 43 Thank you for your attention! Follow Chemical Materials on Twitter @WatersChemical 谢谢 どうも有難うございます。 정말 감사합니다