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Introduction
IR microscopy is a well-established analytical
technique for the measurement and identification of
small samples down to a few micrometers in size. It
is used extensively in the polymer, pharmaceutical,
chemical, food, and electronics industries, to name a
few, often identifying small contaminations or
foreign objects of unknown origin. In forensic
applications small particles of materials such as
drugs, paint chips, residues or fibers are often collected as evidence and analyzed by IR microscopy.
The type and size of the material, as well as the matrix in which the sample is contained, will dictate the
type of IR microscopy sampling technique to be deployed; transmission, reflectance, or ATR.
The Spotlight™
200i IR microscope is a fully automated system comprising:
• Automated X, Y, Z stage
• Automatic illxumination LEDs
• Autofocus
• Auto correction
• Automated switching between transmission and reflectance
• Automated dropdown ATR crystal
All of these features are controlled using the Spectrum 10 software.
Rapid Characterization
of Multiple Regions of
Interest in a Sample
Using Automated
IR Microscopy
A P P L I C A T I O N N O T E
Author:
Ian Robertson
PerkinElmer, Inc.
Seer Green, UK
Infrared, IR Microscopy
2
This routine will detect any particles present in the visible image
and mark them as regions of interest. It will then calculate the
maximum rectangular aperture size that can fit wholly inside each
of the particles, thus minimizing signal-to-noise when the data is
scanned. (In the past manual selection of the regions of interest
and setting of apertures took a considerable amount of time.)
Clicking “Scan Markers” will then initiate collecting transmission
spectra (using equivalent apertures for the background) for each
sample, displaying ratioed sample spectra in real time as they are
collected. Automatic processing of the spectra, such as Search,
Compare or Verify, will be performed during data collection. In the
case of the analysis of the microplastics a spectral search was
performed against a library of polymer spectra to give the identity
of each of the particles.
Two different polymer types were detected in this sample,
identified as polyethylene and polypropylene. The spectra are
shown in Figure 3.
Automated detection and analysis of microplastics
extracted from a cosmetic formulation
An example of this automation is the detection and classification
of microplastic particles extracted from a cosmetic formulation.
Cosmetic exfoliating agents contain small microplastic particles as
the abrasive material to scrub the skin. These microplastics make
their way into the river systems and ultimately into the marine
environment where they are serious pollutants. A commercially
available product was mixed with hot water to dissolve the soluble
ingredients in the formulation. The resulting solution was filtered
using a 50-micrometer mesh, capturing any insoluble components
greater than 50 micrometers in size. The filter was allowed to dry
before transferring the residual particles onto an IR transmitting
window on a microscope holder. A Visible Image Survey was
collected over the area containing the majority of the particles.
Selecting the “Analyze Image” icon in the Spectrum 10 software
calls up the intelligent, automated routine for analyzing the
image, as shown in Figure 1.
Figure 1: The "Analyze Image" function detected filtered particles deposited on a
KBr window.
Figure 3: Spectra of the two different polymer types are shown here.
Top: polypropylene, Bottom: polyethylene.
Figure 2: Results screen for detection and identification of particles.
Traditionally, measurement of a sample on an IR microscope
involves several manual steps to find and specify the regions of
interest for the analysis and manual processing of the collected
data. All of which can be very time consuming. These processes
have now been fully automated within the Spectrum 10
software, using intelligent detection routines for the typical types
of samples measured on an IR microscope: particles, multilayer
samples, and sample inclusions.
This Application Note will demonstrate the advantages of such an
automated IR microscopy platform for the characterization of
particles and/or foreign objects in different types of materials.
3
Automated detection and analysis of
contaminants on an electronic contact
Electronic contacts need to be clean and free from
contamination to avoid problems in operation. A sample was
submitted for analysis that had visible contaminants. The sample
was placed in the Spotlight 200i and a “Visible Image Survey”
collected over the entire contact. The resulting image was then
analyzed using the “Detect Particles” function in the Spectrum
10 software in an attempt to find any contamination. The Visible
Image Survey and an expanded region showing the particles
detected are shown as Figure 4.
After selecting “Scan Markers”, the software automatically
collected reflectance backgrounds and spectra for the particles
(fibers), their spectra shown as Figure 5.
Five different layers were detected in the image and markers
placed in the center of each layer. Clicking “Scan Markers” will
automatically collect the background scans then move to each
of the markers, lower the automated ATR crystal onto the
sample (Figure 7), and measure the spectra. The spectra
obtained from each of the layers are shown in Figure 8 and were
identified by comparison against search libraries.
Figure 4: The Visible Image Survey and expanded region show automatic detection
of contaminants.
Figure 5: Reflectance spectra of the two contaminant fibers.
Figure 6: Automated detection feature of the Spotlight 200i show multiple layers in
a polymer laminate.
The spectra of these two materials are similar with the lower
spectrum showing an additional broad peak centred around 700
cm-1. The top spectrum was identified as an acrylonitrile-butyl
methacrylate copolymer by searching the spectrum against a
spectral library of polymers and polymer additives. Since the
lower spectrum clearly has another component present, it was
subjected to a mixture search that also detected the presence of
tin oxide in the sample.
Automated ATR analysis of layers in a
polymer laminate
ATR is a convenient sampling technique requiring minimal
sample preparation that has been routinely applied within the
polymer industry. An automated drop-down ATR crystal on an IR
microscope allows for automated measurement of polymer
samples, including layers of multilayer laminates. A multilayer
polymer card was clamped in a sample holder and placed on the
stage of the Spotlight 200i. A “Visible Image Survey” was
recorded over a 2 mm x 2 mm area of the sample and the
automated “Detect Layers” function in the Spectrum 10
software was applied, as shown in Figure 6.
For a complete listing of our global offices, visit www.perkinelmer.com/ContactUs
Copyright ©2015, PerkinElmer, Inc. All rights reserved. PerkinElmer®
is a registered trademark of PerkinElmer, Inc. All other trademarks are the property of their respective owners.
012075_01	PKI
PerkinElmer, Inc.
940 Winter Street
Waltham, MA 02451 USA	
P: (800) 762-4000 or
(+1) 203-925-4602
www.perkinelmer.com
Figure 7: The automated dropdown ATR crystal. Figure 8: Spectra of the five layers.
The layers were identified from top to bottom as Polyethylene
terephthalate (PET), ethylene-vinyl acetate (EVA) co-polymer, silica-
loaded polyethylene, another layer of EVA and another layer of PET.
Summary
The Spotlight 200i, an intelligent automated IR microscope system, is
able to simplify and dramatically speed up the process of collecting
and analyzing spectra from a variety of sample types. The
automation has been applied to all sampling modes: Transmission,
Reflectance, and ATR, as well as a variety of different sample types:
particles, fibers and multi-layers.

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Rapid Characterization of Multiple Regions of Interest in a Sample Using Automated IR Microscopy

  • 1. Introduction IR microscopy is a well-established analytical technique for the measurement and identification of small samples down to a few micrometers in size. It is used extensively in the polymer, pharmaceutical, chemical, food, and electronics industries, to name a few, often identifying small contaminations or foreign objects of unknown origin. In forensic applications small particles of materials such as drugs, paint chips, residues or fibers are often collected as evidence and analyzed by IR microscopy. The type and size of the material, as well as the matrix in which the sample is contained, will dictate the type of IR microscopy sampling technique to be deployed; transmission, reflectance, or ATR. The Spotlight™ 200i IR microscope is a fully automated system comprising: • Automated X, Y, Z stage • Automatic illxumination LEDs • Autofocus • Auto correction • Automated switching between transmission and reflectance • Automated dropdown ATR crystal All of these features are controlled using the Spectrum 10 software. Rapid Characterization of Multiple Regions of Interest in a Sample Using Automated IR Microscopy A P P L I C A T I O N N O T E Author: Ian Robertson PerkinElmer, Inc. Seer Green, UK Infrared, IR Microscopy
  • 2. 2 This routine will detect any particles present in the visible image and mark them as regions of interest. It will then calculate the maximum rectangular aperture size that can fit wholly inside each of the particles, thus minimizing signal-to-noise when the data is scanned. (In the past manual selection of the regions of interest and setting of apertures took a considerable amount of time.) Clicking “Scan Markers” will then initiate collecting transmission spectra (using equivalent apertures for the background) for each sample, displaying ratioed sample spectra in real time as they are collected. Automatic processing of the spectra, such as Search, Compare or Verify, will be performed during data collection. In the case of the analysis of the microplastics a spectral search was performed against a library of polymer spectra to give the identity of each of the particles. Two different polymer types were detected in this sample, identified as polyethylene and polypropylene. The spectra are shown in Figure 3. Automated detection and analysis of microplastics extracted from a cosmetic formulation An example of this automation is the detection and classification of microplastic particles extracted from a cosmetic formulation. Cosmetic exfoliating agents contain small microplastic particles as the abrasive material to scrub the skin. These microplastics make their way into the river systems and ultimately into the marine environment where they are serious pollutants. A commercially available product was mixed with hot water to dissolve the soluble ingredients in the formulation. The resulting solution was filtered using a 50-micrometer mesh, capturing any insoluble components greater than 50 micrometers in size. The filter was allowed to dry before transferring the residual particles onto an IR transmitting window on a microscope holder. A Visible Image Survey was collected over the area containing the majority of the particles. Selecting the “Analyze Image” icon in the Spectrum 10 software calls up the intelligent, automated routine for analyzing the image, as shown in Figure 1. Figure 1: The "Analyze Image" function detected filtered particles deposited on a KBr window. Figure 3: Spectra of the two different polymer types are shown here. Top: polypropylene, Bottom: polyethylene. Figure 2: Results screen for detection and identification of particles. Traditionally, measurement of a sample on an IR microscope involves several manual steps to find and specify the regions of interest for the analysis and manual processing of the collected data. All of which can be very time consuming. These processes have now been fully automated within the Spectrum 10 software, using intelligent detection routines for the typical types of samples measured on an IR microscope: particles, multilayer samples, and sample inclusions. This Application Note will demonstrate the advantages of such an automated IR microscopy platform for the characterization of particles and/or foreign objects in different types of materials.
  • 3. 3 Automated detection and analysis of contaminants on an electronic contact Electronic contacts need to be clean and free from contamination to avoid problems in operation. A sample was submitted for analysis that had visible contaminants. The sample was placed in the Spotlight 200i and a “Visible Image Survey” collected over the entire contact. The resulting image was then analyzed using the “Detect Particles” function in the Spectrum 10 software in an attempt to find any contamination. The Visible Image Survey and an expanded region showing the particles detected are shown as Figure 4. After selecting “Scan Markers”, the software automatically collected reflectance backgrounds and spectra for the particles (fibers), their spectra shown as Figure 5. Five different layers were detected in the image and markers placed in the center of each layer. Clicking “Scan Markers” will automatically collect the background scans then move to each of the markers, lower the automated ATR crystal onto the sample (Figure 7), and measure the spectra. The spectra obtained from each of the layers are shown in Figure 8 and were identified by comparison against search libraries. Figure 4: The Visible Image Survey and expanded region show automatic detection of contaminants. Figure 5: Reflectance spectra of the two contaminant fibers. Figure 6: Automated detection feature of the Spotlight 200i show multiple layers in a polymer laminate. The spectra of these two materials are similar with the lower spectrum showing an additional broad peak centred around 700 cm-1. The top spectrum was identified as an acrylonitrile-butyl methacrylate copolymer by searching the spectrum against a spectral library of polymers and polymer additives. Since the lower spectrum clearly has another component present, it was subjected to a mixture search that also detected the presence of tin oxide in the sample. Automated ATR analysis of layers in a polymer laminate ATR is a convenient sampling technique requiring minimal sample preparation that has been routinely applied within the polymer industry. An automated drop-down ATR crystal on an IR microscope allows for automated measurement of polymer samples, including layers of multilayer laminates. A multilayer polymer card was clamped in a sample holder and placed on the stage of the Spotlight 200i. A “Visible Image Survey” was recorded over a 2 mm x 2 mm area of the sample and the automated “Detect Layers” function in the Spectrum 10 software was applied, as shown in Figure 6.
  • 4. For a complete listing of our global offices, visit www.perkinelmer.com/ContactUs Copyright ©2015, PerkinElmer, Inc. All rights reserved. PerkinElmer® is a registered trademark of PerkinElmer, Inc. All other trademarks are the property of their respective owners. 012075_01 PKI PerkinElmer, Inc. 940 Winter Street Waltham, MA 02451 USA P: (800) 762-4000 or (+1) 203-925-4602 www.perkinelmer.com Figure 7: The automated dropdown ATR crystal. Figure 8: Spectra of the five layers. The layers were identified from top to bottom as Polyethylene terephthalate (PET), ethylene-vinyl acetate (EVA) co-polymer, silica- loaded polyethylene, another layer of EVA and another layer of PET. Summary The Spotlight 200i, an intelligent automated IR microscope system, is able to simplify and dramatically speed up the process of collecting and analyzing spectra from a variety of sample types. The automation has been applied to all sampling modes: Transmission, Reflectance, and ATR, as well as a variety of different sample types: particles, fibers and multi-layers.