Srikrishnan B
Student ID:139947cfee8911e9bad6bbf0abfb73de
B.Tech Biotechnology
SASTRA Deemed University, Thanjavur.
Academic Writing (Swayam)
Srikrishnan B
120010123
Introduction:
Bacterial
infections
Diffusional
limitation
Biofilms
Engineered
microorganisms
for treatment
Introduction:
• Currently, treating bacterial infections involves mainly natural, semi-
synthetic and synthetic antibiotics.
• The main problem with antibiotics use is the development of antibiotic
resistance. The lack of specificity of these antibiotics results in disturbing
the commensal microbial community.
• New synthetic biology approaches use engineered microbes to act against
pathogens either by competing for space and nutrients or by releasing
antibacterial agents.
• One of the pitfalls with this is that diffusional resistance will prevent the
released antibacterials to reach the pathogens.
• Also, most of the pathogens exist in biofilm lifestyle which provides
inherent resistance to these agents through their matrix.
Objective
• To engineer Escherichia coli to detect and degrade Pseudomonas
biofilms
Strategy:
Experimental design:
Engineered E.coli
with directed
motility,
antibacterial and
antibiofilm activity
Directed
motility
Antibiofilm
activity of
DnaseI
Cellular ‘Sense
and Killing’
Antibacterial
activity of purified
Microcin
Directed motility of E.coli :
Motility assay with CheZ variants:
Diameter of migration is larger in CheZ-Ybaq carrying cells in the presence of inducer
Selective motility assay:
Significant difference in the migration diameter between tests with AHL incubation and AI2 incubation
Directed motility assay:
Chez-YbaQ expressing cells selectively migrate towards PAO1 supernatant
Microcin induction:
Lane 1: Supernatant from uninduced cells
Lane 2: Supernatant from induced cells
Lane 3: Purified Microcin
Purification:
His tag- Nickel column
Molecular weight cutoff filtration
Antibacterial activity of wildtype microcin and microcin with secretion tag:
PAO1 shows decreased growth rate with increased microsin concentration (both with and without secretion tag)
Live dead staining:
Dead cells take PI and fluoresce red while live cells remain green
Supernatant from YebF-MccS expressing cells kills PAO1 cells
Co-culture assay : Cellular sense and killilng
Growth and cell survival decreases in the case of YebF-MccS cells and also with higher initial E.coli mass
Antibiofilm activity of DNaseI a. Viable biofilm cells and biofilm mass
decreases significantly when exposed to
engineered bacteria
b. Confocal Microscope images of treated
biofilms
Motility test of fully engineered E.coli :
RFP expressing E.coli (engineered) migrates to the bottom well up the AHL concentration gradient
Migration, Biofilm degradation and Killing:
Cell viability decreases and dead cell density increases (of PAO1 ) when treated with the engineered bacteria
Summary:
Bacterial
infections
Diffusional
limitation
Biofilms
Engineered
microorganisms
for treatment
Sensing + Directed motility Biofilm degradation + antibacterial
peptide
Future prospective:
• Engineer commensal bacteria to ‘Seek and kill’ pathogens
• Introduce more regulations in the expression of the three modules
Limitation:
• Diffusional constraint applies to QS molecules too in non-laboratory conditions.
Acknowledgements:
I thank the Swayam platform and the course Academic Writing for valuable
inputs that helped a lot in making this material.
I thank the course coordinator Dr. Ajay Semalty whose teachings were
valuable.
Thanks

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