Running workflows through galaxy bosc presentation
Download as PPTX, PDF1 like519 views
Taverna Server allows users to run workflows remotely on a deployment host through a web portal. It uses a Tomcat container with a CXF framework to run per-user Taverna workflow engines and file managers as web services accessed through REST and SOAP interfaces. Results are stored in a document store and managed through a common system and management model accessible by clients like the Taverna Workbench and a Ruby client.
1 of 6
Download to read offline
More Related Content
What's hot (17)
Ad
Viewers also liked (15)
Ad
Similar to Running workflows through galaxy bosc presentation (20)
More from Bioinformatics Open Source Conference (20)
Recently uploaded (20)
Running workflows through galaxy bosc presentation
- 1. Running Workflows through Taverna ServerDonal FellowsThe University of Manchester
- 2. The Overall PictureUser WorkflowsWeb PortalDeployment HostTomcat 6 Container+ CXF FrameworkWeb ServicePer-Run Taverna Workflow EnginePer User File ManagerTaverna Server WebappDocument StoreCommon System ModelTaverna Workbench (forthcoming)SOAPCommon Management ModelRESTJabberAtomJMXDatabaseRuby Client
- 3. Taverna ServerServerized TavernaMultiuserSecuredRuns Taverna Workflows away from the desktopREST and SOAP interfaces - Supports many clientsWe have Ruby and Java client librariesNo favourite languages!Open to be used and changedLGPL 2.1Projects Using/EvaluatingTaverna-Galaxy, NeISS, MethodBox, Next Generation Sequencing, HELIO, caBIG, EU IMPACT, …
- 5. Using in a PortalUser goes to PortalSees functionality provided by workflowExample: Get annotated SNPs for sample using Mouse baselineClicks on Run it, provides dataTaverna Server gets busy here…Waits for resultsOr gets notified (e.g., SMS, Twitter)Picks up resultsExample: Consequences of all changes across genome