This document presents a new technique called the Modified Deconvolution Technique (MDT) to reconstruct instantaneous heavy duty vehicle emissions from measured data. MDT models the emissions analyzer system using a gamma probability density function to account for time dispersion effects. It uses fast Fourier transforms to divide the analyzer output signal by the impulse response function to estimate the original instantaneous emissions signal. The technique was tested on emissions data from a transit bus and showed improved correlation between reconstructed emissions and engine power compared to an earlier Differential Coefficients Method. The new technique provides a more accurate way to relate emissions to operating conditions like vehicle speed and acceleration.