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International Journal of Electrical and Computer Engineering (IJECE)
Vol. 12, No. 5, October 2022, pp. 4734~4745
ISSN: 2088-8708, DOI: 10.11591/ijece.v12i5.pp4734-4745  4734
Journal homepage: http://ijece.iaescore.com
Computer-aided diagnostic system kinds and pulmonary nodule
detection efficacy
Omar Raad Kadhim, Hassan Jassim Motlak, Kasim Karam Abdalla
Department of Electrical Engineering, College of Engineering, University of Babylon, Babylon, Iraq
Article Info ABSTRACT
Article history:
Received Mar 28, 2021
Revised Jun 17, 2022
Accepted Jun 27, 2022
This paper summarizes the literature on computer-aided detection (CAD)
systems used to identify and diagnose lung nodules in images obtained with
computed tomography (CT) scanners. The importance of developing such
systems lies in the fact that the process of manually detecting lung nodules is
painstaking and sequential work for radiologists, as it takes a long time.
Moreover, the pulmonary nodules have multiple appearances and shapes,
and the large number of slices generated by the scanner creates great
difficulty in accurately locating the lung nodules. The handcraft nodules
detection process can be caused by messing some nodules spicily when these
nodules' diameter be less than 10 mm. So, the CAD system is an essential
assistant to the radiologist in this case of nodule detection, and it contributed
to reducing time consumption in nodules detection; moreover, it applied
more accuracy in this field. The objective of this paper is to follow up on
current and previous work on lung cancer detection and lung nodule
diagnosis. This literature dealt with a group of specialized systems in this
field quickly and showed the methods used in them. It dealt with an
emphasis on a system based on deep learning involving neural convolution
networks.
Keywords:
Computed tomography
auto-encoders
Computer-aided detection
systems
Convolution neural network
Stacked auto-encoders
This is an open access article under the CC BY-SA license.
Corresponding Author:
Omar Raad Kadhim
Electrical Engineering, Babylon University
Babylon, Iraq
Email: omaryo.omar@gmail.com
1. INTRODUCTION
Cancer can be considered the second-largest mortality cause worldwide. The number of deaths
caused by this disease is estimated to be 1 per 6 mortalities at the international level. Moreover,
approximately 9,6 million fatalities in 2018, as shown in the World Health Organization (WHO) reports [1].
Lung cancer is amongst the most prevalent types of cancer in the world, with a high rate of infection for both
sexes alike. We can verify this through the data provided by the International Agency for Research on Cancer
(IARC) for the year 2018 [2]. The data of this agency showed that lung cancer takes the lead the remainder of
the injury types of cancer; furthermore, it showed that the incidence of lung cancer reached (11.6 percent)
from totally registered cancer cases. The agency reports indicated that the number of injuries reached more
than (2,093,876), distributed by (1,368,524) injuries in men and (725,352) injuries in women. On the other
hand, according to (IARC), the total number of deaths worldwide in 2018 (1,761,007) as a result of lung
cancer. Tobacco consumption is one of the most severe factors that cause cancer, and tobacco is responsible
for an estimated 22% of cancer deaths.
The mortality of cancer can indeed be decreased by the early diagnosis and treatment of cases. So,
for earlier detection, several ways to screen lung cancer are utilized, for example, a biopsy, computed
tomography scans, radiography, and sputum cytology, which doctors recommend among the various
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Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim)
4735
ways [2]. The usual method is computed tomography scanning, and the updated screening technology is the
low-dose computed tomography (LDCT) [3]. The adoption of LDCT protocols to screen lung cancer is an
effective way to detect lung nodules early. However, there are many obstacles in this type of diagnosis,
including [1] the negative impact on low disparity lesion visibility due to low dose spatial imaging resolution
and noise is growing. This presents defiance for radiologists to find small nodules and try to interpret
them [2]. Moreover, it is also a challenge for radiologists to decide whether a node is malignant or benign in
interpreting LDCT scans [3]. Furthermore, results may be susceptible to error due to manual reading or due
to many cases number, and the radiologists can lose nodules and thus possible cancer. The exposure to
radiation in a low-dose computed tomography scan ranges from 1 to 4 millisieverts [3]. If the scanning
process has a positive result, it is especially recommended to low-dose CT screening [4]. The risk that older
patients will develop cancer can be increased due to repeated computed tomography scans. To reduce
frequent computed tomography scanning, several researchers developed systems known as computer-aided
detection (CAD), which can contribute to reducing false-positive discovery and increased sensitivity in
cancer diagnosis. As lung cancer deaths have increased, extensive research has been undertaken since 2009.
Based on the information presented above, the mortality rate can be decreased or treat this type of cancer if it
is detected early and precisely. This is what CAD systems attempt to provide.
In this paper, the crux of the research problems revolves around: firstly, the diversity of CAD
systems and the various approaches utilized in them, and how utilized a proper technique. Secondly utilizing
the (CAD) systems developed by researchers, there was a variation in diagnostic results for cancerous
nodules in the lung in terms of sensitivity and accuracy of these systems. The objective of this paper is to
investigate several kinds of CAD systems and try to focus on some details to assess the efficiency of the
mechanisms. Finally, the performance of some CAD systems proposed in the literature are compared
methods is compared in terms of specificity, accuracy, and sensitivity.
2. METHODS
This section of the paper overview and describes previous literary works, techniques, and methods
used by researchers at the various stages of CAD systems. It deals with each stage according to what was
stated in the previous literature; furthermore, it gives a brief introduction about each stage. But before starting
to describe the CAD systems, it is necessary to describe the data packets entering these systems and
processed by the CT scanner.
2.1. Data acquisition
The availability of several public websites hosting huge medical image repositories related to all
lung diseases is a promising attempt to enhance lung cancer research. It is therefore noted that most
researchers in the field of computer-aided detection (CAD) systems have developed their systems based on
the databases and medical images available at these sites. So, firstly, the medical CT images are collected
from these public repositories and adopted to the computer-aided detection (CAD) system. These images are
in a digital imaging and communications in medicine file format (DICOM). When the work concerns lung
nodules detection, the CT images are usually (512 by 512) pixels in the shape of a two-dimensional slice.
Slices vary in number between one scan and another. It is also worth noting are some of these essential sites
which provide medical images, to name a few (LIDC-IDRI) repositories [1] and The automatic nodule
detection 2009 (ANODE09) databases [2].
2.2. CAD system
A brief introduction is discussed in this section about the formation of (CAD) system. CAD systems
are classified into two forms, as shown in Figure 1, depending on the feature extraction method that is
utilized to extract the lung nodules. The first one is well known as a Handcraft or traditional-CAD system,
which utilizes manual feature extraction, and the second one is adopted deep learning spatially convolution
neural network (CNN) to learn these features automatically. In this paper, these two systems will be
reviewed, and a comparison made based on what researchers presented in these two fields.
2.2.1. CAD system utilized handcraft or traditional feature extraction
These systems utilized handcrafted features extracted to specify malignant tissue and benign tissue.
The images obtained from a CT scan in these systems are often handled in four main stages. The first one is
noise denoising and images enhancements (pre-processing). After that, the second stage is a segmentation of
the lungs, the third stage deals with detecting nodules. Finally, the fourth stage deals with the nodule
classification if it is benign or malignant Figure 2. Each stage was precisely described by looking at the
related works so far.
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Computer
-Aided
Detection
System
CAD System based on Automatic feature
extraction (utilized Deep learning)
CAD systemutilized Handcraft or traditional
feature extraction
Noise denoising and image
enhancements
Lung Segmentation
Feature Extraction
Lung Segmentation
Automatic Feature Extraction& Classification
using (Deep Learning)
Step 1
Classification
Step 2
Step 3
Step 4
Step 1
Step 2
Figure 1. CAD systems classification
Imagesfrom CT
scanner
Noise denoising
and image
enhancements
Lung
segmentation
Feature
extraction
Classification
step
Figure 2. CAD system based on handcraft or traditional feature extraction
a. Noise denoising and image enhancements
This stage is a pre-processing stage and can be done by implementing a variety of types of filters,
which can contribute to reducing the noise and enhancement computed tomography scan images. The
literature contains various filters, among them the log filter, Gaussian and median filter, and dot enhancement
filter, and in the pre-processing stage, histogram-based filters are frequently adopted. Log filter is adopted in
[5]–[7]. Gaussian filter is adopted in the work of [8], [9]. The median filter has been adopted in [9]–[13]. In
other literature, the dot enhancement filter was adopted in [14], [15]. Wiener filter was examined in [11]. The
multi-scale filter was examined in [16], [17]. Wiener filter with contrast limited adaptive histogram
equalization (CLAHE) is applied in [14]. The selective enhancement filter is applied in [18]–[20].
A multi-scale selective enhancement filter was applied in [14]. Gabor filter was examined in [17]. Local
binary patterns (LBP) filter was used in [18], fuzzy filter adopted in [19], the sequential filter was
implemented in [20] was used as a pre-processing step Shell filter examined in [21].
b. Lung segmentation
This stage's goals are to increase the ability of lung nodules detections, and this is done by reducing
the search area. So, several steps are followed to get lung segmentation properly. To achieve the lung
segmentation stage sub-steps are utilized to images. The first sub-step is extracting thorax from a computed
tomography scan: In this phase, cleans and removes all things outside the patient's body. For instance, the
place where the patient lies, the bedsheets, and the air in its [22]. The second sub-step is to extract the left and
right lungs only, and this can be achieved by adopting the Hounsfield method to CT scan images. These
images' histograms after hounsfield are divided into a variety of voxel intensities. The lungs with low voxel
intensity are with a range from -900 to -500 HU. The other higher voxel intensity with a value above the
-500 HU, for instance, blood, fat, bone, muscles, and chest wall. The threshold is made to isolate lung
parenchyma. The -500 HU value is used as an ideal thresholding value by many researchers or optimal
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threshold computed by adopting iterative optimal threshold methods. After that, a region growing algorithm
is adopted to reconstruct the lungs depending on the most significant region, representing the first lung, and
the second biggest one represents the second lungs. Thus, by designing a proper mask, the two-lung region
(left & right) can be extracted from a computed tomography slice. For lung segmentation, a region-growing
algorithm, in addition to a threshold as stopping criteria, can be implemented, as described in [22]. Several
studies have used a 3D region-growing algorithm for pulmonary segmentation. The image labels after
segmentation by using a 3D labeling algorithm. In the end, two lung regions were extracted from the labeled
image, the largest and next largest connected regions, and the rest of the segmented regions set as the
background [23], [24]. The threshold segmentation of the lungs is the work of [18], [19], [21]–[23],
[25]–[27], [28]–[36]. Otsu threshold [28], [37], segmentation on the basis of the iterative threshold [9], [38],
[39], adaptive threshold [26], [40], The literature has an adaptive 3-D fuzzy threshold [41]. Pulmonary
segmentation on the basis of region and 3D region can be located in [5], [42]–[48]. A global active contour
method for lung segmentation is discussed in [24].
c. Feature extraction
The significant benefit of this phase is to eliminate or reduce false-positive lung nodule detection.
Several features’ kinds are presented in the literature. Furthermore, these features are classified as nodules
depending on shapes, texture, and intensity. The first feature depending on the shape, especially the
morphology of the nodule, is a circular in 2D CT scan or spherical morphology in 3D CT scan, and the
second feature depends on the texture. Another extracted feature is the intensity feature. The extracted vector
of this feature is then fed to the final step (classification step) to decide the nodule if it is benign or malignant.
Some of the literature showed that the reduction of false-positive nodules detection could be made throw
extracting more than feature types, for instance, the shape and the texture features. In [25], texture features
like (Shannon and Tsallis Q entropy) are adopted. In [49], Shannon entropy, Gaussian smoothing, Kullback
and Leibler divergence method, Canny edge detection, Gaussian filter, and doble thresholding method are
adopted to extract features from CT scan images. In [50], several features are adopted, for instance, grey
value features, shape features, the position of each region of interest (ROI), computed tomography min value,
computed tomography max value, volume sphericity, spatial distribution density, and maximum diameter
feature. In [51], area feature is utilized, pixel mean intensity, and centroid, finally, diameter and perimeter
eccentricity feature used in this work. In [52], the shape feature, besides several features such as grey-level
and surface feature, gradient feature, texture feature, and forward-backward feature selection, is utilized in
this work. In [53], the alpha shape method is adopted. Besides shape feature, texture feature and a
combination between shape and texture feature vectors are utilized to feed the classifier later. In [9], surface
saliency and surface-normal vector, and applied novel feature, wall detection, and elimination and angular
histogram of surface normal (AHSN) to extract features from CT scan images. Finally, the comparison is
held between the novel feature and others. In [54] diversity index feature, ring feature, and sphere feature are
used in this work. In [55], the Gaussian mixture feature and rule-based filtering are implemented in this work.
In [56] Shape diagram, 3D proportion measurement is used, and the 3D cylindrical approach is utilized in
this work. Appearance feature, morphology feature, texture feature, grey-level feature, two-dimensional
feature, long axis feature, short axis feature, perimeter feature, area feature, three-dimensional shape,
barycenter difference feature are implemented in the work of [13].
d. Classification step
At this phase, the features vectors obtained in the previous step are classified through two
sub-stages. The first phase investigated whether or not the ROI is a nodule, so this can be assumed reducing
in the false positive, and this can increase the specificity for a CAD system. The second stage examines if the
nodule is classified as benign or malignant. The k-means clustering is implemented to segmentation of
juxtavascular and juxtapleura nodules, and it takes less time when compared with other methods [30].
In [50], rule-based classification (RBC) is utilized to minimize the false-positive rate and classify nodules
correctly. Furthermore, a comparison is made with k-nearest neighbors and neural networks. Several
researchers are adopted the space vector machine (SVM) classifier to reduce the false-positive rate and
examine if nodules are malignant or benign. In [52], a novel method is adopted to decrease the false-positive
ratio, so the classifier implemented to classify nodule is SVM with Massive training artificial neural network
(MTNN). In [53], the generalized linear model regression (GLMR) classifier is implemented and compared
with the other classes. After this step, the detection of nodules from non-nodule is done, and the performance
for the system must be calculated.
2.2.2. CAD system based on automatic feature extraction (utilized deep learning)
Due to the differences observed in the complexity of biomedical images, medical things, for
example, lesions and anatomy are difficult to recognize from the picture. Therefore, instead of seeking
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excellent features based on manual extracting, there has been an emphasis on the automatic method of
functional learning known as (learning example). Furthermore, deep learning algorithms have become a
precious tool for medical imagery utilized for detection, characterization, and analysis the lesions. This
method involved developing layer-specific network architecture by taking into account the aim of increased
prediction performance. In this type of system, two models can be achieved. First, no manual vector of
feature extraction is used because a deep learning algorithm depends on a U-net network to extract nodules
masks in lung segmentation steps and then feed them directly to another neural network to classify them. The
second model deals with feeding the images after pre-processing techniques directly to the neural network
and taking the image as pixels to detect nodules. Figure 3 views the architecture for this technique. However,
there are two kinds of deep learning classified depending on the training method. The first one is a supervised
method that needs a training data set to learn from it, for example, of these networks (MTNN), convolution
neural networks (CNN). In contrast to supervised networks, the unsupervised deep learning method never
need to data set for learning from it and directly fed the images to the network, for instance, of these
networks (AEs) auto-encoders and (SAEs) stacked auto-encoders. A survey was conducted on deep learning
in various network architectures with medical imaging implementations is utilized in [57]. The latest
enhancement and challenges in medical imagery machine learning are discussed in [58], [59]. Previous
literature has shown that method convolution neural network is a promising method with valuable medical
results. It has, therefore, been included in many works of literature. Various kinds of it can be constructed
According to the number of classes and layer dimensions. In previous literature, this method was applied to
the form (2-D CNN), and the second form is (3-D CNN).
Figure 3. Deep learning network
a. CNN based on a 2-dimension image
In this method, the essential 2-D conversion procedure was being utilized to detect local
characteristics of the whole image. For its computational efficiency and simplicity, CNN architecture uses
this mostly. Images in tradition contain an intensity matrix, and these images are 2-D dimensions. In this
network, it automatically learned to various 2-D features/filters from the training dataset. Several 2-D
convolution Nets streams are proposed in [60]. In the beginning, three algorithms for candidate detectors
specially designed for finding sub-solid, massive, and solid nodules were combined. Then, a 2-D patches
group with 64×64 pixels was taken away from distinct, focused planes for each candidate. In [61], the data
are from two sources PET/CT scans images after filtered fed to CNN to detect nodules and finally used SVM
classifier. In [62], U-net architecture is adopted for image segmentation. This method is used to extract the
high-level information by contracting path and the other path, which is the symmetric expanding path used to
reconstruct the information needed. In [63], several models of convolution neural networks are implemented,
such as LeNet, VGG-16 deep learning, and AlexNet in the final, the fully connected layer output is applied
directly to various classifiers, and comparisons are held between these classifier outputs to select the best
methods. In [64], 2-D CNN is adopted with two ROI sizes; the first one is 32*32, and the second is 64*64.
Furthermore, the architecture for this neural network depends on two convolution layers. The first
convolution layer is adopted with eight feature maps at the same time; the second contains sixteen feature
maps. The convolution layers are followed by the downsampling layer with kernel size 2*2. Finally, four
layers are fully connected, attached to the final downsample layer. The first one fully connected layer
contains 150 nodes, while the second layer has 100 nodes, also the third layer deals with 50 nodes; finally,
the last layer deals with two nodes to make a final decision. In [65], a cascade of neural networks with
selective classifiers are adopted. This implementation is used to address the class imbalance problem.
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Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim)
4739
b. CNN based on a 3-dimension image
The fundamental convolution operation was considered in three directions (x, y, z) simultaneously
in this network. The 3-D convolutional filters implement and have been used for automatic extraction via the
input 3-D data. These networks cost more than 2-D networks in terms of calculation efficiency. 3-D
convolution operations require further memory, while a 3-D matrix calculation is necessary to save features
extracted in the memory of the computer. The main 3-D CNN benefit is that with 3-D filters, it provides
multi-view features. Lung nodule detection architecture based on 3-D CNN, proposed by [66]. There are
Three 3-D CNNs used by researchers to representative features and encode spatial information by adopting a
hierarchical structure, in the first structure, using a field size of 20×20×6, the second structure with size
30×30×10, finally third structure with field size 40×40×20. After that, these structures are merged and made
a feature extractor system. In [67], 3-D CNN is adopted with multi-level contextual. Due to variation in the
size of nodules, so four various size of 3-D CNN is designed and the fusion for these networks give an
excellent coverage error for classifiers.
2.3. Summarized CAD systems
The performance of a CAD system employing Handcraft or conventional feature extraction is
dependent in some way on the processing steps performed before the feature extraction step. Therefore, CT
scan images are passed through the image enhancement and image segmentation processes. In order to
prepare the region of interest (ROI) for feature extraction, approaches chosen during the enhancement and
segmentation steps are sometimes manually and precisely tuned. While the CAD system based on automatic
feature extraction (using deep learning) (the second module) employs an automatic features extractor, each image
pixel is analyzed, and the best features are extracted directly. The automatically features extracted can reduce the
requirement for image enhancement and segmentation techniques. Therefore, the time consumption is decreased.
Table 1 classified these techniques based on feature extraction methods which is utilized in previous
literatures works and try to summarized its and compare stages in two systems. Moreover, Table 2 showed
performance of these techniques based on handcraft feature extraction methods which is utilized in previous
literatures works and try to summarized its.
Table 1. Summarized CAD systems depends on feature extraction methods
Stages CAD system utilized handcraft or
traditional feature extraction
(first module)
CAD system based on
automatic feature
extraction (utilized
deep learning)
(the second module)
Note
Noise
denoising and
image
enhancements
Filters
The log filter, Gaussian and median
filter, and Dot Enhancement filter,
Wiener filter, multi-scale filter, Gabor
filter, Sell filter, LBP, Fuzzy and
sequential filter.
Croup, Zooming,
Normalization,
resizing images.
This stage deals with reducing noise to CT
scan images and try to enhance images by
applied different filters. This step as we
noticed used in the first (handcraft) model
widely, because the best results, can be
obtained in the next segmentation steps if the
quality of the images is increased. However,
second model system scan images as pixel by
pixel and take a decision so it is not preferred
to use these filters but utilized some
preprocessing technique can help in the auto
feature detection systems.
Lung
Segmentation
3D region-growing algorithm with 3D
labeling algorithm, iterative threshold
and Otsu threshold, global active
contour method, adaptive threshold,
adaptive 3-D fuzzy threshold, region
and 3D region method, active contour
method.
U-net, V–net. These methods were used to extract the lungs
in the first module. Furthermore, the second
model implements a neural network to extract
nodules.
Feature
extraction
Shannon and Tsallis Q entropy,
Computed Tomography min value,
Computed Tomography max value,
volume sphericity, spatial distribution
density, and maximum diameter
feature, angular histogram of surface
normal (AHSN), Diversity index
feature.
Ann, CNN The first module depends on extracting vectors
of features depending on shape or texture or
intensity or mixed between these types to
extract nodules.
The second module utilizes a neural network
to extract nodules and, after that, decide if it is
nodule or non-nodule.
Classification
step
Space vector machine (SVM), rule-
based classification (RBC), GLMR,
K-means classifier, KNN classifier.
Ann, CNN The first module utilizes different classifiers to
predict benign or malignant tissue.
The second module depends on a neural
network to decided nodules or non-nodule
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3. RESULTS AND DISCUSSION
The results as shown in Tables 2 and 3 by applying various kinds, whether it is (handcraft or
automatic) CAD system. the results are different some of these research calculates the accuracy and
sensitivity and tries to reduce false-positive reduction other research show accuracy only in [53], [68]–[70] or
sensitivity and false-positive reduction. Moreover, the results may differ if the dataset change so, this can be
made the comparison more complex. Some of the researches in Table 3, as mentioned before, utilized
systems and tested them on a single or private dataset like in [50], [52], [70]–[72]. Some of this research
adopted competition performance metric (CPM). Other utilized free response receiver operating
characteristic (FROC) metrics.
Table 2. Performance for the system in literature based on handcraft features extraction
Reference Data Sets Results
[9] LIDC Acc.: 99.0% Sens.: 97.5% Spc.: 97.5% FPs=6.76
[25] LIDC Acc.: 88.4% Sens.: 90.6% spc.: 85% FPs=1.17
[50] Privet Sens.: 85% FPs=2
[51] LIDC Acc.: 92% Sens.: 100% spc.: 50% FPs=21
[52] Privet Sens.:91.95% FPs=17.64
[54] LIDC-IDRI Acc.: 99.2% Sens.: 98% Spc.: 97.6%
[55] LIDC Sens.: 89.7% FPs=4.14
[56] LIDC-IDRI Acc.: 95.33% Sens.: 91.99% Spc.: 96.48%
[60] LIDC Sens.: 97.33 % Spc.: 97.11%
[61] NSRTC-LUNG/LIDC Acc.: 87.8 % Sens.: 93.75 % Spc.: 87.6%
[62] JSRT Sens.: 78.1
[68] LIDC Acc.: 91.00
[69] JSRT Acc.: 96.58
[71] University of Istanbul Acc.: 90.7 % Sens.: 89.6% Spc.: 87.5%
[73] LIDC-IDRI Acc.: 97.55 % Sens.: 85.91 % Spc.: 97.7%
[74] LIDC-IDRI Acc.: 80.36% Sens.: 82.05 % Spc.: 76.47%
[75] NBIA/ELCAP Acc.: 82.66% Sens.: 96.15 % Spc.: 52.17%
[76] 3AHG Acc.: 84.39 % Spc.: 92%
Table 3. Review for results and networks architecture to CNN in literature
References Network Data set Result
[63] 2D CNN LIDC Acc.: 99.51 Sens.: 99.32 Spec.: 99.71
[64] 2D CNN LIDC dataset Sens: 85.256% Spec.: 90.658% Acc.: 89.895% AUC: 0.94
[65] Luna Acc.: 91.23 Sens.: 81.2
[66] M-RPN 3D DCNN Sph6 &LIDC-IDRI& ANODE09
&LUNA 16
Sens.: 98.4% and 98.7% at 2.1 and FPs/scan: 1.97 FROC
score 0.946
[67] MBEL-3D CNN LUNA 16 CPM score 87.3%
[70] 2D CNN Italian MLD & Danish DLCST Acc.: 72.9%
[72] 3D CNN Privet Sens.: 90% FPS/scan: 5
[77] 3D Faster R-CNN LIDC CPM score 0.550
[78] 3D Faster R-CNN
& CMixNet
LIDC-IDRI &LUNA 16 FROC score 94.21%
[79] PSO CNN LIDC-IDRI Acc.: 97.62 Sens.: 92.20 Spec.: 98.21
[80] 3D Faster R-CNN LIDC-IDRI &LUNA 16 FROC score 84.42%
[81] 2D-CNN LIDC-IDRI Acc.: 88.28% Sens.: 83.82% F score 83.45% AUC 87%
[82] Ensemble of
3D-CNNs
LIDC-IDRI Acc.: 97.35% Sens.: 96.57% F score 96.42 % AUC 0.98
[83] CNN LIDC-IDRI Acc.: 84.15% Sens.: 83.96% Spec.: 84.32%
[84] 2D- CNN LIDC Acc.: 93.20% Sens.: 92.40% Spec.: 94.80% Fps 4.5
[85] CNN LIDC-IDRI Sens.: 80.06% at 4.7 FPs/scan and 94% at 15.1 FPs/scan
[86] 3D CNN LIDC dataset. Sens.: 80% FPs/scan: 22.4
[87] 3D CNN LIDC dataset For 3D MVCNN with DAG architecture: Sens.: 95.68%
Spec.: 94.51% Error rate: 4.59
[88] 3D CNN LIDC dataset Acc.: 87.14% Sens: 0.77 Spec: 0.93 AUC: 0.93
[89] MVCNN DLCST&ANODE09 Sens.: 85.4% at 1 FPs/scan and 90% at 4 FPs/scan CMP
score 0.637
[90] LIDC Sens.:92.2
[91] Private Sens.:90.1
[92] LIDC-IDRI Acc.: 84 Sens.:89
[93] Luna Sens.:90.7%
[94] 3D CNN SPIE-LUNGSx dataset Sens.: 80% FPs/scan: 10
[95] 2D CNN LIDC dataset Acc.: 70.69 % AUC: 0.63
[96] 2D- CNN LIDC Acc.: 97.52% Sens.:95.31% Spec.:99.73%
[97] 3D-CNN LIDC Acc.: 87.50% Sens.:98.30% Spec.:77.60% FPs/scan: 11
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4. CONCLUSION
Firstly, the handcraft or traditional feature extraction are concluded as shown in this paper. The
denoising step and enhancement image are important and can assume to reduce false-positive reduction in
these CAD systems' next steps. The two lungs are extracted in lung segmentation steps, and some noise and
air from the CT scan are removed. The extracted lungs feed to the next step to extract features which in turn
contributes to nodule detection later. Moreover, Feature extraction steps are utilized to extract vectors of
feature to extract nodules from segmented lungs. This step reduces the false-positive nodules through
utilizing different kinds of the feature, as mentioned before in this paper. Finally, the classification step
utilizes different classifiers to detect nodules and reduce the false-positive nodules and satisfied if tissue is
benign or malignant. Secondly, this paper discussed types of automatic feature extraction systems which
utilize deep learning analysis. This system takes image pixels by to analyze them. More computation is
required especially when CNN is adopted to extract nodules. This type of system may not require complex
denoising and image enhancing methods, but rather some image prepossessing techniques such as zooming,
cropping, or rotating images in different directions, which improves diagnosis efficiency. The automatic
feature extraction system adopts U-net to segment lungs and nodules masks from its. After that, feed the
extracted nodules by U-net to another neural network to make diagnoses if this tissue is benign or malignant.
On the other hand, in some literature, CNN 2D and 3D are utilized directly after preprocessing step. In
conclusion, Different systems have been developed in lung nodule detection and diagnosis in the last few
years, and much research tries to contribute to enhancing the detection and diagnosis of lung nodules
systems. Although research tries to detect normal nodules with a size range from 3 to 30 mm, on the other
hand, much research focused on nodules with a small radius. Despite these varieties of systems and much
research, this topic still needs to be developed in techniques spatially in lung segmentation and reduce false
positive detection. This paper's contribution summarized two CAD systems classified on how features have
been extracted since 2008 and exhibited some detail about each step for these systems. Finally, the urgent
and renewed need for a system used with more than one database with promising results in terms of
accuracy, sensitivity, and the rest of the outcome factors.
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[90] Q. Dou, H. Chen, L. Yu, J. Qin, and P. A. Heng, “Multilevel contextual 3-D CNNs for false positive reduction in pulmonary
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[91] A. Teramoto, H. Fujita, O. Yamamuro, and T. Tamaki, “Automated detection of pulmonary nodules in PET/CT images: Ensemble
false-positive reduction using a convolutional neural network technique,” Medical Physics, vol. 43, no. 6, pp. 2821–2827, 2016,
doi: 10.1118/1.4948498.
[92] W. Li, P. Cao, D. Zhao, and J. Wang, “Pulmonary nodule classification with deep convolutional neural networks on computed
tomography images,” Computational and Mathematical Methods in Medicine, vol. 2016, pp. 1–7, 2016, doi:
10.1155/2016/6215085.
[93] M. Sakamoto and H. Nakano, “Cascaded neural networks with selective classifiers and its evaluation using lung X-ray CT
images,” arXiv preprint arXiv:1611.07136, 2016.
[94] R. Anirudh, J. J. Thiagarajan, T. Bremer, and H. Kim, “Lung nodule detection using 3D convolutional neural networks trained on
weakly labeled data,” in Medical Imaging 2016: Computer-Aided Diagnosis, 2016, vol. 9785, 978532, doi: 10.1117/12.2214876.
[95] W. Shen et al., “Learning from experts: developing transferable deep features for patient-level lung cancer prediction,” in Lecture
Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
Springer, 2016, pp. 124–131.
[96] A. Sheeraz, J. M. Younus, A. M. Usman, Q. Usman, and H. Ali, “Pulmonary nodules detection and classification using hybrid
features from computerized tomographic images,” Journal of Medical Imaging and Health Informatics, vol. 6, no. 1, pp. 252–259,
2016, doi: 10.1166/jmihi.2016.1600.
[97] N. Manikandan and K. Devi, “Automatic detection and classification of pulmonary nodules on CT images,” Research Journal of
Engineering and Technology, vol. 5, no. 2, pp. 68–76, 2014.
Int J Elec & Comp Eng ISSN: 2088-8708 
Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim)
4745
BIOGRAPHIES OF AUTHORS
Omar Raad Kadhim received B.Sc. in electronic and communication
engineering from University of Baghdad, Baghdad, Iraq in 2009 and M.Sc. in Electronic and
Communication Engineering from Cankaya University, Ankara, and turkey in 2014. And know
he is a Ph.D. student in electrical engineering department in Babylon University, Babylon,
Iraq. At the same time, he is assistant lecturer in Al-Iraqia University, Baghdad, Iraq. His
research interests include image processing, channel coding, RF communication, electronics,
analog and digital signal processing, and analog integrated circuit design. He can be contacted
at email: omaryo.omar@gmail.com.
Hassan Jassim Motlak received B.Sc. in electrical engineering and M.Sc. in
Electrical Engineering from University of Babylon, Babylon, Iraq and Ph.D. from Jamia Millia
Islamia, Delhi, India. He has been with Department of Electrical Engineering, Engineering
College, University of Babylon, Iraq. His scientific degree is Professor and research interests
include communication electronics, analog and digital signal processing, and analog integrated
circuit design. He can be contacted at email: hssn_jasim@yahoo.com.
Kasim Karam Abdalla received B.Sc. in electrical engineering and M.Sc. in
Communication Engineering from University of Technology, Baghdad, Iraq and Ph.D. from
Jamia Millia Islamia, Delhi, India. He has been with Department of Electrical Engineering,
Engineering College, University of Babylon, Iraq since 2006. His scientific degree is Professor
and research interests include communication electronics, analog and digital signal processing,
and analog integrated circuit design. He can be contacted at email: kasimkaa.11@gmail.com

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Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy

  • 1. International Journal of Electrical and Computer Engineering (IJECE) Vol. 12, No. 5, October 2022, pp. 4734~4745 ISSN: 2088-8708, DOI: 10.11591/ijece.v12i5.pp4734-4745  4734 Journal homepage: http://ijece.iaescore.com Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy Omar Raad Kadhim, Hassan Jassim Motlak, Kasim Karam Abdalla Department of Electrical Engineering, College of Engineering, University of Babylon, Babylon, Iraq Article Info ABSTRACT Article history: Received Mar 28, 2021 Revised Jun 17, 2022 Accepted Jun 27, 2022 This paper summarizes the literature on computer-aided detection (CAD) systems used to identify and diagnose lung nodules in images obtained with computed tomography (CT) scanners. The importance of developing such systems lies in the fact that the process of manually detecting lung nodules is painstaking and sequential work for radiologists, as it takes a long time. Moreover, the pulmonary nodules have multiple appearances and shapes, and the large number of slices generated by the scanner creates great difficulty in accurately locating the lung nodules. The handcraft nodules detection process can be caused by messing some nodules spicily when these nodules' diameter be less than 10 mm. So, the CAD system is an essential assistant to the radiologist in this case of nodule detection, and it contributed to reducing time consumption in nodules detection; moreover, it applied more accuracy in this field. The objective of this paper is to follow up on current and previous work on lung cancer detection and lung nodule diagnosis. This literature dealt with a group of specialized systems in this field quickly and showed the methods used in them. It dealt with an emphasis on a system based on deep learning involving neural convolution networks. Keywords: Computed tomography auto-encoders Computer-aided detection systems Convolution neural network Stacked auto-encoders This is an open access article under the CC BY-SA license. Corresponding Author: Omar Raad Kadhim Electrical Engineering, Babylon University Babylon, Iraq Email: omaryo.omar@gmail.com 1. INTRODUCTION Cancer can be considered the second-largest mortality cause worldwide. The number of deaths caused by this disease is estimated to be 1 per 6 mortalities at the international level. Moreover, approximately 9,6 million fatalities in 2018, as shown in the World Health Organization (WHO) reports [1]. Lung cancer is amongst the most prevalent types of cancer in the world, with a high rate of infection for both sexes alike. We can verify this through the data provided by the International Agency for Research on Cancer (IARC) for the year 2018 [2]. The data of this agency showed that lung cancer takes the lead the remainder of the injury types of cancer; furthermore, it showed that the incidence of lung cancer reached (11.6 percent) from totally registered cancer cases. The agency reports indicated that the number of injuries reached more than (2,093,876), distributed by (1,368,524) injuries in men and (725,352) injuries in women. On the other hand, according to (IARC), the total number of deaths worldwide in 2018 (1,761,007) as a result of lung cancer. Tobacco consumption is one of the most severe factors that cause cancer, and tobacco is responsible for an estimated 22% of cancer deaths. The mortality of cancer can indeed be decreased by the early diagnosis and treatment of cases. So, for earlier detection, several ways to screen lung cancer are utilized, for example, a biopsy, computed tomography scans, radiography, and sputum cytology, which doctors recommend among the various
  • 2. Int J Elec & Comp Eng ISSN: 2088-8708  Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim) 4735 ways [2]. The usual method is computed tomography scanning, and the updated screening technology is the low-dose computed tomography (LDCT) [3]. The adoption of LDCT protocols to screen lung cancer is an effective way to detect lung nodules early. However, there are many obstacles in this type of diagnosis, including [1] the negative impact on low disparity lesion visibility due to low dose spatial imaging resolution and noise is growing. This presents defiance for radiologists to find small nodules and try to interpret them [2]. Moreover, it is also a challenge for radiologists to decide whether a node is malignant or benign in interpreting LDCT scans [3]. Furthermore, results may be susceptible to error due to manual reading or due to many cases number, and the radiologists can lose nodules and thus possible cancer. The exposure to radiation in a low-dose computed tomography scan ranges from 1 to 4 millisieverts [3]. If the scanning process has a positive result, it is especially recommended to low-dose CT screening [4]. The risk that older patients will develop cancer can be increased due to repeated computed tomography scans. To reduce frequent computed tomography scanning, several researchers developed systems known as computer-aided detection (CAD), which can contribute to reducing false-positive discovery and increased sensitivity in cancer diagnosis. As lung cancer deaths have increased, extensive research has been undertaken since 2009. Based on the information presented above, the mortality rate can be decreased or treat this type of cancer if it is detected early and precisely. This is what CAD systems attempt to provide. In this paper, the crux of the research problems revolves around: firstly, the diversity of CAD systems and the various approaches utilized in them, and how utilized a proper technique. Secondly utilizing the (CAD) systems developed by researchers, there was a variation in diagnostic results for cancerous nodules in the lung in terms of sensitivity and accuracy of these systems. The objective of this paper is to investigate several kinds of CAD systems and try to focus on some details to assess the efficiency of the mechanisms. Finally, the performance of some CAD systems proposed in the literature are compared methods is compared in terms of specificity, accuracy, and sensitivity. 2. METHODS This section of the paper overview and describes previous literary works, techniques, and methods used by researchers at the various stages of CAD systems. It deals with each stage according to what was stated in the previous literature; furthermore, it gives a brief introduction about each stage. But before starting to describe the CAD systems, it is necessary to describe the data packets entering these systems and processed by the CT scanner. 2.1. Data acquisition The availability of several public websites hosting huge medical image repositories related to all lung diseases is a promising attempt to enhance lung cancer research. It is therefore noted that most researchers in the field of computer-aided detection (CAD) systems have developed their systems based on the databases and medical images available at these sites. So, firstly, the medical CT images are collected from these public repositories and adopted to the computer-aided detection (CAD) system. These images are in a digital imaging and communications in medicine file format (DICOM). When the work concerns lung nodules detection, the CT images are usually (512 by 512) pixels in the shape of a two-dimensional slice. Slices vary in number between one scan and another. It is also worth noting are some of these essential sites which provide medical images, to name a few (LIDC-IDRI) repositories [1] and The automatic nodule detection 2009 (ANODE09) databases [2]. 2.2. CAD system A brief introduction is discussed in this section about the formation of (CAD) system. CAD systems are classified into two forms, as shown in Figure 1, depending on the feature extraction method that is utilized to extract the lung nodules. The first one is well known as a Handcraft or traditional-CAD system, which utilizes manual feature extraction, and the second one is adopted deep learning spatially convolution neural network (CNN) to learn these features automatically. In this paper, these two systems will be reviewed, and a comparison made based on what researchers presented in these two fields. 2.2.1. CAD system utilized handcraft or traditional feature extraction These systems utilized handcrafted features extracted to specify malignant tissue and benign tissue. The images obtained from a CT scan in these systems are often handled in four main stages. The first one is noise denoising and images enhancements (pre-processing). After that, the second stage is a segmentation of the lungs, the third stage deals with detecting nodules. Finally, the fourth stage deals with the nodule classification if it is benign or malignant Figure 2. Each stage was precisely described by looking at the related works so far.
  • 3.  ISSN: 2088-8708 Int J Elec & Comp Eng, Vol. 12, No. 5, October 2022: 4734-4745 4736 Computer -Aided Detection System CAD System based on Automatic feature extraction (utilized Deep learning) CAD systemutilized Handcraft or traditional feature extraction Noise denoising and image enhancements Lung Segmentation Feature Extraction Lung Segmentation Automatic Feature Extraction& Classification using (Deep Learning) Step 1 Classification Step 2 Step 3 Step 4 Step 1 Step 2 Figure 1. CAD systems classification Imagesfrom CT scanner Noise denoising and image enhancements Lung segmentation Feature extraction Classification step Figure 2. CAD system based on handcraft or traditional feature extraction a. Noise denoising and image enhancements This stage is a pre-processing stage and can be done by implementing a variety of types of filters, which can contribute to reducing the noise and enhancement computed tomography scan images. The literature contains various filters, among them the log filter, Gaussian and median filter, and dot enhancement filter, and in the pre-processing stage, histogram-based filters are frequently adopted. Log filter is adopted in [5]–[7]. Gaussian filter is adopted in the work of [8], [9]. The median filter has been adopted in [9]–[13]. In other literature, the dot enhancement filter was adopted in [14], [15]. Wiener filter was examined in [11]. The multi-scale filter was examined in [16], [17]. Wiener filter with contrast limited adaptive histogram equalization (CLAHE) is applied in [14]. The selective enhancement filter is applied in [18]–[20]. A multi-scale selective enhancement filter was applied in [14]. Gabor filter was examined in [17]. Local binary patterns (LBP) filter was used in [18], fuzzy filter adopted in [19], the sequential filter was implemented in [20] was used as a pre-processing step Shell filter examined in [21]. b. Lung segmentation This stage's goals are to increase the ability of lung nodules detections, and this is done by reducing the search area. So, several steps are followed to get lung segmentation properly. To achieve the lung segmentation stage sub-steps are utilized to images. The first sub-step is extracting thorax from a computed tomography scan: In this phase, cleans and removes all things outside the patient's body. For instance, the place where the patient lies, the bedsheets, and the air in its [22]. The second sub-step is to extract the left and right lungs only, and this can be achieved by adopting the Hounsfield method to CT scan images. These images' histograms after hounsfield are divided into a variety of voxel intensities. The lungs with low voxel intensity are with a range from -900 to -500 HU. The other higher voxel intensity with a value above the -500 HU, for instance, blood, fat, bone, muscles, and chest wall. The threshold is made to isolate lung parenchyma. The -500 HU value is used as an ideal thresholding value by many researchers or optimal
  • 4. Int J Elec & Comp Eng ISSN: 2088-8708  Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim) 4737 threshold computed by adopting iterative optimal threshold methods. After that, a region growing algorithm is adopted to reconstruct the lungs depending on the most significant region, representing the first lung, and the second biggest one represents the second lungs. Thus, by designing a proper mask, the two-lung region (left & right) can be extracted from a computed tomography slice. For lung segmentation, a region-growing algorithm, in addition to a threshold as stopping criteria, can be implemented, as described in [22]. Several studies have used a 3D region-growing algorithm for pulmonary segmentation. The image labels after segmentation by using a 3D labeling algorithm. In the end, two lung regions were extracted from the labeled image, the largest and next largest connected regions, and the rest of the segmented regions set as the background [23], [24]. The threshold segmentation of the lungs is the work of [18], [19], [21]–[23], [25]–[27], [28]–[36]. Otsu threshold [28], [37], segmentation on the basis of the iterative threshold [9], [38], [39], adaptive threshold [26], [40], The literature has an adaptive 3-D fuzzy threshold [41]. Pulmonary segmentation on the basis of region and 3D region can be located in [5], [42]–[48]. A global active contour method for lung segmentation is discussed in [24]. c. Feature extraction The significant benefit of this phase is to eliminate or reduce false-positive lung nodule detection. Several features’ kinds are presented in the literature. Furthermore, these features are classified as nodules depending on shapes, texture, and intensity. The first feature depending on the shape, especially the morphology of the nodule, is a circular in 2D CT scan or spherical morphology in 3D CT scan, and the second feature depends on the texture. Another extracted feature is the intensity feature. The extracted vector of this feature is then fed to the final step (classification step) to decide the nodule if it is benign or malignant. Some of the literature showed that the reduction of false-positive nodules detection could be made throw extracting more than feature types, for instance, the shape and the texture features. In [25], texture features like (Shannon and Tsallis Q entropy) are adopted. In [49], Shannon entropy, Gaussian smoothing, Kullback and Leibler divergence method, Canny edge detection, Gaussian filter, and doble thresholding method are adopted to extract features from CT scan images. In [50], several features are adopted, for instance, grey value features, shape features, the position of each region of interest (ROI), computed tomography min value, computed tomography max value, volume sphericity, spatial distribution density, and maximum diameter feature. In [51], area feature is utilized, pixel mean intensity, and centroid, finally, diameter and perimeter eccentricity feature used in this work. In [52], the shape feature, besides several features such as grey-level and surface feature, gradient feature, texture feature, and forward-backward feature selection, is utilized in this work. In [53], the alpha shape method is adopted. Besides shape feature, texture feature and a combination between shape and texture feature vectors are utilized to feed the classifier later. In [9], surface saliency and surface-normal vector, and applied novel feature, wall detection, and elimination and angular histogram of surface normal (AHSN) to extract features from CT scan images. Finally, the comparison is held between the novel feature and others. In [54] diversity index feature, ring feature, and sphere feature are used in this work. In [55], the Gaussian mixture feature and rule-based filtering are implemented in this work. In [56] Shape diagram, 3D proportion measurement is used, and the 3D cylindrical approach is utilized in this work. Appearance feature, morphology feature, texture feature, grey-level feature, two-dimensional feature, long axis feature, short axis feature, perimeter feature, area feature, three-dimensional shape, barycenter difference feature are implemented in the work of [13]. d. Classification step At this phase, the features vectors obtained in the previous step are classified through two sub-stages. The first phase investigated whether or not the ROI is a nodule, so this can be assumed reducing in the false positive, and this can increase the specificity for a CAD system. The second stage examines if the nodule is classified as benign or malignant. The k-means clustering is implemented to segmentation of juxtavascular and juxtapleura nodules, and it takes less time when compared with other methods [30]. In [50], rule-based classification (RBC) is utilized to minimize the false-positive rate and classify nodules correctly. Furthermore, a comparison is made with k-nearest neighbors and neural networks. Several researchers are adopted the space vector machine (SVM) classifier to reduce the false-positive rate and examine if nodules are malignant or benign. In [52], a novel method is adopted to decrease the false-positive ratio, so the classifier implemented to classify nodule is SVM with Massive training artificial neural network (MTNN). In [53], the generalized linear model regression (GLMR) classifier is implemented and compared with the other classes. After this step, the detection of nodules from non-nodule is done, and the performance for the system must be calculated. 2.2.2. CAD system based on automatic feature extraction (utilized deep learning) Due to the differences observed in the complexity of biomedical images, medical things, for example, lesions and anatomy are difficult to recognize from the picture. Therefore, instead of seeking
  • 5.  ISSN: 2088-8708 Int J Elec & Comp Eng, Vol. 12, No. 5, October 2022: 4734-4745 4738 excellent features based on manual extracting, there has been an emphasis on the automatic method of functional learning known as (learning example). Furthermore, deep learning algorithms have become a precious tool for medical imagery utilized for detection, characterization, and analysis the lesions. This method involved developing layer-specific network architecture by taking into account the aim of increased prediction performance. In this type of system, two models can be achieved. First, no manual vector of feature extraction is used because a deep learning algorithm depends on a U-net network to extract nodules masks in lung segmentation steps and then feed them directly to another neural network to classify them. The second model deals with feeding the images after pre-processing techniques directly to the neural network and taking the image as pixels to detect nodules. Figure 3 views the architecture for this technique. However, there are two kinds of deep learning classified depending on the training method. The first one is a supervised method that needs a training data set to learn from it, for example, of these networks (MTNN), convolution neural networks (CNN). In contrast to supervised networks, the unsupervised deep learning method never need to data set for learning from it and directly fed the images to the network, for instance, of these networks (AEs) auto-encoders and (SAEs) stacked auto-encoders. A survey was conducted on deep learning in various network architectures with medical imaging implementations is utilized in [57]. The latest enhancement and challenges in medical imagery machine learning are discussed in [58], [59]. Previous literature has shown that method convolution neural network is a promising method with valuable medical results. It has, therefore, been included in many works of literature. Various kinds of it can be constructed According to the number of classes and layer dimensions. In previous literature, this method was applied to the form (2-D CNN), and the second form is (3-D CNN). Figure 3. Deep learning network a. CNN based on a 2-dimension image In this method, the essential 2-D conversion procedure was being utilized to detect local characteristics of the whole image. For its computational efficiency and simplicity, CNN architecture uses this mostly. Images in tradition contain an intensity matrix, and these images are 2-D dimensions. In this network, it automatically learned to various 2-D features/filters from the training dataset. Several 2-D convolution Nets streams are proposed in [60]. In the beginning, three algorithms for candidate detectors specially designed for finding sub-solid, massive, and solid nodules were combined. Then, a 2-D patches group with 64×64 pixels was taken away from distinct, focused planes for each candidate. In [61], the data are from two sources PET/CT scans images after filtered fed to CNN to detect nodules and finally used SVM classifier. In [62], U-net architecture is adopted for image segmentation. This method is used to extract the high-level information by contracting path and the other path, which is the symmetric expanding path used to reconstruct the information needed. In [63], several models of convolution neural networks are implemented, such as LeNet, VGG-16 deep learning, and AlexNet in the final, the fully connected layer output is applied directly to various classifiers, and comparisons are held between these classifier outputs to select the best methods. In [64], 2-D CNN is adopted with two ROI sizes; the first one is 32*32, and the second is 64*64. Furthermore, the architecture for this neural network depends on two convolution layers. The first convolution layer is adopted with eight feature maps at the same time; the second contains sixteen feature maps. The convolution layers are followed by the downsampling layer with kernel size 2*2. Finally, four layers are fully connected, attached to the final downsample layer. The first one fully connected layer contains 150 nodes, while the second layer has 100 nodes, also the third layer deals with 50 nodes; finally, the last layer deals with two nodes to make a final decision. In [65], a cascade of neural networks with selective classifiers are adopted. This implementation is used to address the class imbalance problem.
  • 6. Int J Elec & Comp Eng ISSN: 2088-8708  Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim) 4739 b. CNN based on a 3-dimension image The fundamental convolution operation was considered in three directions (x, y, z) simultaneously in this network. The 3-D convolutional filters implement and have been used for automatic extraction via the input 3-D data. These networks cost more than 2-D networks in terms of calculation efficiency. 3-D convolution operations require further memory, while a 3-D matrix calculation is necessary to save features extracted in the memory of the computer. The main 3-D CNN benefit is that with 3-D filters, it provides multi-view features. Lung nodule detection architecture based on 3-D CNN, proposed by [66]. There are Three 3-D CNNs used by researchers to representative features and encode spatial information by adopting a hierarchical structure, in the first structure, using a field size of 20×20×6, the second structure with size 30×30×10, finally third structure with field size 40×40×20. After that, these structures are merged and made a feature extractor system. In [67], 3-D CNN is adopted with multi-level contextual. Due to variation in the size of nodules, so four various size of 3-D CNN is designed and the fusion for these networks give an excellent coverage error for classifiers. 2.3. Summarized CAD systems The performance of a CAD system employing Handcraft or conventional feature extraction is dependent in some way on the processing steps performed before the feature extraction step. Therefore, CT scan images are passed through the image enhancement and image segmentation processes. In order to prepare the region of interest (ROI) for feature extraction, approaches chosen during the enhancement and segmentation steps are sometimes manually and precisely tuned. While the CAD system based on automatic feature extraction (using deep learning) (the second module) employs an automatic features extractor, each image pixel is analyzed, and the best features are extracted directly. The automatically features extracted can reduce the requirement for image enhancement and segmentation techniques. Therefore, the time consumption is decreased. Table 1 classified these techniques based on feature extraction methods which is utilized in previous literatures works and try to summarized its and compare stages in two systems. Moreover, Table 2 showed performance of these techniques based on handcraft feature extraction methods which is utilized in previous literatures works and try to summarized its. Table 1. Summarized CAD systems depends on feature extraction methods Stages CAD system utilized handcraft or traditional feature extraction (first module) CAD system based on automatic feature extraction (utilized deep learning) (the second module) Note Noise denoising and image enhancements Filters The log filter, Gaussian and median filter, and Dot Enhancement filter, Wiener filter, multi-scale filter, Gabor filter, Sell filter, LBP, Fuzzy and sequential filter. Croup, Zooming, Normalization, resizing images. This stage deals with reducing noise to CT scan images and try to enhance images by applied different filters. This step as we noticed used in the first (handcraft) model widely, because the best results, can be obtained in the next segmentation steps if the quality of the images is increased. However, second model system scan images as pixel by pixel and take a decision so it is not preferred to use these filters but utilized some preprocessing technique can help in the auto feature detection systems. Lung Segmentation 3D region-growing algorithm with 3D labeling algorithm, iterative threshold and Otsu threshold, global active contour method, adaptive threshold, adaptive 3-D fuzzy threshold, region and 3D region method, active contour method. U-net, V–net. These methods were used to extract the lungs in the first module. Furthermore, the second model implements a neural network to extract nodules. Feature extraction Shannon and Tsallis Q entropy, Computed Tomography min value, Computed Tomography max value, volume sphericity, spatial distribution density, and maximum diameter feature, angular histogram of surface normal (AHSN), Diversity index feature. Ann, CNN The first module depends on extracting vectors of features depending on shape or texture or intensity or mixed between these types to extract nodules. The second module utilizes a neural network to extract nodules and, after that, decide if it is nodule or non-nodule. Classification step Space vector machine (SVM), rule- based classification (RBC), GLMR, K-means classifier, KNN classifier. Ann, CNN The first module utilizes different classifiers to predict benign or malignant tissue. The second module depends on a neural network to decided nodules or non-nodule
  • 7.  ISSN: 2088-8708 Int J Elec & Comp Eng, Vol. 12, No. 5, October 2022: 4734-4745 4740 3. RESULTS AND DISCUSSION The results as shown in Tables 2 and 3 by applying various kinds, whether it is (handcraft or automatic) CAD system. the results are different some of these research calculates the accuracy and sensitivity and tries to reduce false-positive reduction other research show accuracy only in [53], [68]–[70] or sensitivity and false-positive reduction. Moreover, the results may differ if the dataset change so, this can be made the comparison more complex. Some of the researches in Table 3, as mentioned before, utilized systems and tested them on a single or private dataset like in [50], [52], [70]–[72]. Some of this research adopted competition performance metric (CPM). Other utilized free response receiver operating characteristic (FROC) metrics. Table 2. Performance for the system in literature based on handcraft features extraction Reference Data Sets Results [9] LIDC Acc.: 99.0% Sens.: 97.5% Spc.: 97.5% FPs=6.76 [25] LIDC Acc.: 88.4% Sens.: 90.6% spc.: 85% FPs=1.17 [50] Privet Sens.: 85% FPs=2 [51] LIDC Acc.: 92% Sens.: 100% spc.: 50% FPs=21 [52] Privet Sens.:91.95% FPs=17.64 [54] LIDC-IDRI Acc.: 99.2% Sens.: 98% Spc.: 97.6% [55] LIDC Sens.: 89.7% FPs=4.14 [56] LIDC-IDRI Acc.: 95.33% Sens.: 91.99% Spc.: 96.48% [60] LIDC Sens.: 97.33 % Spc.: 97.11% [61] NSRTC-LUNG/LIDC Acc.: 87.8 % Sens.: 93.75 % Spc.: 87.6% [62] JSRT Sens.: 78.1 [68] LIDC Acc.: 91.00 [69] JSRT Acc.: 96.58 [71] University of Istanbul Acc.: 90.7 % Sens.: 89.6% Spc.: 87.5% [73] LIDC-IDRI Acc.: 97.55 % Sens.: 85.91 % Spc.: 97.7% [74] LIDC-IDRI Acc.: 80.36% Sens.: 82.05 % Spc.: 76.47% [75] NBIA/ELCAP Acc.: 82.66% Sens.: 96.15 % Spc.: 52.17% [76] 3AHG Acc.: 84.39 % Spc.: 92% Table 3. Review for results and networks architecture to CNN in literature References Network Data set Result [63] 2D CNN LIDC Acc.: 99.51 Sens.: 99.32 Spec.: 99.71 [64] 2D CNN LIDC dataset Sens: 85.256% Spec.: 90.658% Acc.: 89.895% AUC: 0.94 [65] Luna Acc.: 91.23 Sens.: 81.2 [66] M-RPN 3D DCNN Sph6 &LIDC-IDRI& ANODE09 &LUNA 16 Sens.: 98.4% and 98.7% at 2.1 and FPs/scan: 1.97 FROC score 0.946 [67] MBEL-3D CNN LUNA 16 CPM score 87.3% [70] 2D CNN Italian MLD & Danish DLCST Acc.: 72.9% [72] 3D CNN Privet Sens.: 90% FPS/scan: 5 [77] 3D Faster R-CNN LIDC CPM score 0.550 [78] 3D Faster R-CNN & CMixNet LIDC-IDRI &LUNA 16 FROC score 94.21% [79] PSO CNN LIDC-IDRI Acc.: 97.62 Sens.: 92.20 Spec.: 98.21 [80] 3D Faster R-CNN LIDC-IDRI &LUNA 16 FROC score 84.42% [81] 2D-CNN LIDC-IDRI Acc.: 88.28% Sens.: 83.82% F score 83.45% AUC 87% [82] Ensemble of 3D-CNNs LIDC-IDRI Acc.: 97.35% Sens.: 96.57% F score 96.42 % AUC 0.98 [83] CNN LIDC-IDRI Acc.: 84.15% Sens.: 83.96% Spec.: 84.32% [84] 2D- CNN LIDC Acc.: 93.20% Sens.: 92.40% Spec.: 94.80% Fps 4.5 [85] CNN LIDC-IDRI Sens.: 80.06% at 4.7 FPs/scan and 94% at 15.1 FPs/scan [86] 3D CNN LIDC dataset. Sens.: 80% FPs/scan: 22.4 [87] 3D CNN LIDC dataset For 3D MVCNN with DAG architecture: Sens.: 95.68% Spec.: 94.51% Error rate: 4.59 [88] 3D CNN LIDC dataset Acc.: 87.14% Sens: 0.77 Spec: 0.93 AUC: 0.93 [89] MVCNN DLCST&ANODE09 Sens.: 85.4% at 1 FPs/scan and 90% at 4 FPs/scan CMP score 0.637 [90] LIDC Sens.:92.2 [91] Private Sens.:90.1 [92] LIDC-IDRI Acc.: 84 Sens.:89 [93] Luna Sens.:90.7% [94] 3D CNN SPIE-LUNGSx dataset Sens.: 80% FPs/scan: 10 [95] 2D CNN LIDC dataset Acc.: 70.69 % AUC: 0.63 [96] 2D- CNN LIDC Acc.: 97.52% Sens.:95.31% Spec.:99.73% [97] 3D-CNN LIDC Acc.: 87.50% Sens.:98.30% Spec.:77.60% FPs/scan: 11
  • 8. Int J Elec & Comp Eng ISSN: 2088-8708  Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim) 4741 4. CONCLUSION Firstly, the handcraft or traditional feature extraction are concluded as shown in this paper. The denoising step and enhancement image are important and can assume to reduce false-positive reduction in these CAD systems' next steps. The two lungs are extracted in lung segmentation steps, and some noise and air from the CT scan are removed. The extracted lungs feed to the next step to extract features which in turn contributes to nodule detection later. Moreover, Feature extraction steps are utilized to extract vectors of feature to extract nodules from segmented lungs. This step reduces the false-positive nodules through utilizing different kinds of the feature, as mentioned before in this paper. Finally, the classification step utilizes different classifiers to detect nodules and reduce the false-positive nodules and satisfied if tissue is benign or malignant. Secondly, this paper discussed types of automatic feature extraction systems which utilize deep learning analysis. This system takes image pixels by to analyze them. More computation is required especially when CNN is adopted to extract nodules. This type of system may not require complex denoising and image enhancing methods, but rather some image prepossessing techniques such as zooming, cropping, or rotating images in different directions, which improves diagnosis efficiency. The automatic feature extraction system adopts U-net to segment lungs and nodules masks from its. After that, feed the extracted nodules by U-net to another neural network to make diagnoses if this tissue is benign or malignant. On the other hand, in some literature, CNN 2D and 3D are utilized directly after preprocessing step. 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  • 12. Int J Elec & Comp Eng ISSN: 2088-8708  Computer-aided diagnostic system kinds and pulmonary nodule detection efficacy (Omar Raad Kadhim) 4745 BIOGRAPHIES OF AUTHORS Omar Raad Kadhim received B.Sc. in electronic and communication engineering from University of Baghdad, Baghdad, Iraq in 2009 and M.Sc. in Electronic and Communication Engineering from Cankaya University, Ankara, and turkey in 2014. And know he is a Ph.D. student in electrical engineering department in Babylon University, Babylon, Iraq. At the same time, he is assistant lecturer in Al-Iraqia University, Baghdad, Iraq. His research interests include image processing, channel coding, RF communication, electronics, analog and digital signal processing, and analog integrated circuit design. He can be contacted at email: omaryo.omar@gmail.com. Hassan Jassim Motlak received B.Sc. in electrical engineering and M.Sc. in Electrical Engineering from University of Babylon, Babylon, Iraq and Ph.D. from Jamia Millia Islamia, Delhi, India. He has been with Department of Electrical Engineering, Engineering College, University of Babylon, Iraq. His scientific degree is Professor and research interests include communication electronics, analog and digital signal processing, and analog integrated circuit design. He can be contacted at email: hssn_jasim@yahoo.com. Kasim Karam Abdalla received B.Sc. in electrical engineering and M.Sc. in Communication Engineering from University of Technology, Baghdad, Iraq and Ph.D. from Jamia Millia Islamia, Delhi, India. He has been with Department of Electrical Engineering, Engineering College, University of Babylon, Iraq since 2006. His scientific degree is Professor and research interests include communication electronics, analog and digital signal processing, and analog integrated circuit design. He can be contacted at email: kasimkaa.11@gmail.com