Fate of pyruvate - A quick review

Fate of Pyruvate- A quick review
Namrata Chhabra
M.D., Biochemistry
1
Namrata Chhabra (Biochemistry for medics-
Lecture notes)

Learning objectives
• To know the different reactions pyruvate
undergoes under different cellular conditions
and in various cell types
• To know the biological and clinical significance
of each of the reactions
2Namrata Chhabra (Biochemistry for medics-
Lecture notes)

Sources of Pyruvate
Pyruvate
Glycolysis
Alanine
Malic
acid
Lactate
Serine
Cysteine
3
Lecture notes)

Fate of Pyruvate
Pyruvate
Lactate
Alanine
Acetyl
co A
Oxalo
acetate
Ethanol
Malic
acid
4
Lecture notes)

1) Pyruvate to lactate conversion
The reduction of pyruvate by NADH to form
lactate is catalyzed by lactate dehydrogenase
.
The reaction takes place in the cells when the
amount of oxygen is limiting, as in muscle during
intense activity. 5
Lecture notes)

1) Pyruvate to lactate conversion
(contd.)
• In the cells lacking mitochondria and under
anaerobic conditions, the NADH formed in the
oxidation of glyceraldehyde 3-phosphate is
consumed in the reduction of pyruvate.
• The regeneration of NAD + in the reduction of
pyruvate to lactate sustains the continued
operation of glycolysis under anaerobic
conditions.
6
Lecture notes)

7
Lecture notes)

2) Pyruvate to Oxaloacetate
conversion
• Mitochondrial pyruvate carboxylase catalyzes
the carboxylation of pyruvate to oxaloacetate,
an ATP-requiring reaction in which the vitamin
biotin is the coenzyme.
• Biotin binds CO2 from bicarbonate as
carboxybiotin prior to the addition of the CO2
to pyruvate.
8
Lecture notes)

2) Pyruvate to Oxaloacetate
conversion (contd.)
• The Oxaloacetate can be subsequently used for the
synthesis of Aspartate, phosphoenol pyruvate or
• utilized in the TCA cycle depending upon the need of
the cell. 9
Lecture notes)

3) Pyruvate to Alanine conversion
• Pyruvate can be transaminated to form
Alanine as per the need. The reaction is
catalyzed by ALT (Alanine amino transferase).
• This reaction is important for the catabolism
and synthesis of non- essential amino acids
10
Lecture notes)

4) Pyruvate to Malate conversion
• Pyruvate to malate reaction is a reversible reaction,
catalyzed by malate dehydrogenase.
• Cytosolic malate dehydrogenase (Malic enzyme) is an
important source for the synthesis of NADPH that
can be used for the reductive biosynthesis.
11
Lecture notes)

4) Pyruvate to Malate
conversion(contd.)
• Pyruvate can be directly converted to
oxaloacetate or it is first carboxylated to
malate and then decarboxylated to form
oxaloacetate.
• These two reactions are called CO2 filling up
reactions or Anaplerotic reactions. They
provide oxaloacetate when there is sudden
influx of Acetyl Co A in the TCA cycle.
12
Lecture notes)

4) Pyruvate to Malate conversion
13
Lecture notes)

5) Pyruvate to Ethanol conversion
• Ethanol is formed from pyruvate in yeast and
several other microorganisms.
• The first step is the decarboxylation of
pyruvate.
• This reaction is catalyzed by pyruvate
decarboxylase, which requires the coenzyme
thiamine pyrophosphate (TPP) .
14
Lecture notes)

5) Pyruvate to Ethanol conversion
(contd.)
• The second step is the reduction of
acetaldehyde to ethanol by NADH, in a
reaction catalyzed by alcohol dehydrogenase.
• This process regenerates NAD+.
15
Lecture notes)

6) Pyruvate to Acetyl co A conversion
• Under aerobic conditions, pyruvate is
transported into mitochondria by a proton
symporter.
• In the mitochondrial matrix, pyruvate is
oxidatively decarboxylated by the pyruvate
dehydrogenase complex to form acetyl CoA.
• This irreversible reaction is the link between
glycolysis and the citric acid cycle.
16
Lecture notes)

6) Pyruvate to Acetyl co A conversion
17
Lecture notes)

Components of Pyruvate dehydrogenase
complex
1) Enzymes- The pyruvate dehydrogenase complex
is a large, highly integrated complex of 2 types of
enzymes-
A)- Catalytic enzymes
a) Pyruvate dehydrogenase (E1)
b) Dihydrolipoyl transacetylase (E2)
c) Dihydrolipoyl dehydrogenase (E3)
B)- Regulatory Enzymes
a) PDH Kinase
b) PDH Phosphatase
18
Lecture notes)

Components of Pyruvate dehydrogenase
complex (contd.)
2) Coenzymes of PDH complex
Five coenzymes:
• Thiamine pyrophosphate (TPP),
• Lipoic acid,
• CoASH,
• FAD and
• NAD+ participate in the overall reaction
19
Lecture notes)

Reaction catalyzed by PDH Complex
• The conversion of pyruvate into acetyl CoA
consists of three steps:
• Decarboxylation,
• Oxidation, and
• Transfer of the resultant acetyl group to CoA
• These steps are coupled to preserve the free
energy derived from the decarboxylation step to
drive the formation of NADH and acetyl CoA.
20
Lecture notes)

Reaction steps
21
Lecture notes)

Reaction steps (contd.)
• During the oxidation of pyruvate to CO2 by
pyruvate dehydrogenase,
• the electrons flow from pyruvate to the
Lipoamide moiety of dihydrolipoyl
transacetylase ,
• then to the FAD cofactor of dihydrolipoyl
dehydrogenase and
• finally to reduction of NAD+ to NADH.
22
Lecture notes)

Reaction steps (contd.)
• The acetyl group is linked to coenzyme A
(CoASH) in a high energy thioester bond.
• The acetyl-CoA then enters the TCA cycle for
complete oxidation to CO2 and H2O.
23
Lecture notes)

Regulation of PDH complex
• PDH complex is highly regulated by a variety
of allosteric effectors and by covalent
modification.
• Allosteric regulation- Pyruvate dehydrogenase
is inhibited by its products,
o Acetyl-CoA and
o NADH.
24
Lecture notes)

Regulation of PDH Complex (contd.)
Covalent modification- It is also regulated by
phosphorylation of three serine residues on
the pyruvate dehydrogenase component of
the multienzyme complex.
25
Lecture notes)

PDH exists in two forms-
i) PDH-a form which is active and
dephosphorylated form
ii) PDH -b form which is inactive and
phosphorylated form
26
Lecture notes)

Regulation of PDH complex by
covalent modification
• PDH kinase, causes phosphorylation resulting
in decreased activity, and
• PDH phosphatase causes an increase in
activity by dephosphorylation of the enzyme
27
Lecture notes)

Regulation of PDH Kinase
• Positive effectors
• NADH and Acetyl-CoA are powerful positive
effectors on PDH kinase,
• The kinase is activated by increases in the
[ATP]/[ADP], [Acetyl-CoA]/[CoASH], and
[NADH]/[NAD+] ratios.
• the enzyme thus inactivates PDH by converting it
to the phosphorylated PDH-b form
28
Lecture notes)

Regulation of PDH complex by
covalent modification
29
Lecture notes)

Negative effectors of PDH Kinase
• Pyruvate is a potent negative effector on PDH
kinase,
• when pyruvate levels rise, PDH-a (active form) is
favored even with high levels of NADH and acetyl-
CoA.
Regulation of PDH phosphatase
• Mg2+ and Ca2+ activate the enzyme
30
Lecture notes)

Regulation of PDH Complex
(conclusion)
• Pyruvate dehydrogenase is inhibited both
when there is adequate ATP (and reduced
coenzymes for ATP formation) available, and
also
• when fatty acids are being oxidized. In fasting,
when free fatty acid concentrations increase,
there is a decrease in the proportion of the
enzyme in the active form, leading to a
sparing of carbohydrate.
31
Lecture notes)

Energetics of PDH complex
• Two pyruvate molecules are obtained from
one glucose molecule through glycolysis.
• Each of the pyruvate yields one NADH, thus
there are two NADH molecules to be oxidized
through the electron transport chain.
32
Lecture notes)

Energetics of PDH complex (contd.)
• Each of NADH yields 3 ATP molecules,
• thus a total of 6 ATP molecules are produced
at the level of PDH complex.
33
Lecture notes)

PDH Complex deficiency
• Pyruvate dehydrogenase complex deficiency
(PDCD) is a rare disorder of carbohydrate
metabolism caused by a deficiency of one or
more enzymes in the pyruvate dehydrogenase
complex.
• The age of onset and severity of disease
depends on the activity level of the PDC
enzymes.
34
Lecture notes)

Pathophysiology
1) Energy Deficit-A deficiency in this enzymatic
complex limits the production of citrate.
• Because citrate is the first substrate in the citric
acid cycle, the cycle cannot proceed.
• Alternate metabolic pathways are stimulated in
an attempt to produce acetyl-CoA; however, an
energy deficit remains, especially in the CNS.
• The magnitude of the energy deficit depends on
the residual activity of the enzyme.
35
Lecture notes)

Pathophysiology (contd.)
2) Neurological deficit
• Severe enzyme deficiencies may lead to
congenital brain malformation because of a
lack of energy during neural development.
• Underlying neuropathology is not usually
observed in individuals whose onset of
pyruvate dehydrogenase complex deficiency is
in childhood.
36
Lecture notes)

Clinical Manifestations
The signs of poor neurological development or
degenerative lesions are –
• Poor acquisition or loss of motor milestones,
• poor muscle tone,
• new onset seizures, and
• periods of in-coordination (i.e. ataxia) abnormal
eye movements,
• poor response to visual stimuli,
• mental delay, psychomotor delays and
• growth retardation
37
Lecture notes)

Laboratory Diagnosis
• High blood lactate and
• High pyruvate levels with or without
• lactic acidemia suggest an inborn error of
metabolism at the mitochondrial level.
38
Lecture notes)

Treatment of PDH Complex deficiency
• Cofactor supplementation with thiamine,
carnitine, and Lipoic acid is the standard of
care.
• Ketogenic diets (with restricted carbohydrate
intake) have been used to control lactic
acidosis with minimal success.
39
Lecture notes)

Further Reading
• A case oriented approach towards
Biochemistry- Namrata Chhabra
• http://bit.ly/21idDu9 Case study PDH
Complex deficiency- Namrata Chhabra
40
Lecture notes)

Fate of pyruvate - A quick review

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