The FlexStat is an intelligent thermostat/controller that provides flexible control over indoor environmental quality (IEQ) without a large building automation system. It simplifies networked zone control for HVAC equipment. The FlexStat has a built-in library of control applications that can be selected from menus, including applications for air handling units, fan coil units, heat pumps, and roof top units. It also features temperature, humidity, motion, and CO2 sensing as well as configurable inputs, outputs, scheduling, and alarms.