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GBIF: An infrastructure for
infrastructures
e‐Infrastructures & Biodiversity Workshop
Madrid, September 19, 2013
Francisco [Paco] Pando
-GBIF Spain-CSIC
WP6 Related Sessions
GBIF in one slide
• Inter-governmental organization
• Mission: ”To facilitate free and open access to
biodiversity data worldwide, via the Internet,
to underpin scientific research, conservation
and sustainable development.”
• 416,242,316 data records
• 10,140 datasets
• Since 2001
GBIF: an intergovernmental initiative to
share biodiversity information
Currently 52 countries; 36 International Organisations…
• free and open data under a common standard
How GBIF is perceived
But indeed
Do You Think data Grows On Trees?
…and produced
Where is the infrastructure in GBIF?
• Physical infrastructure
– Physical infrastructure, cyberinfrastructure, human resources,
and expertise, and program management and coordination.
• Information infrastructure
– Data workflows
– Datasets
– Data openness
– Data products
• Capability infrastructure
– Knowledge base and management, training
– Standard development
– Data gateways development
Physical infrastructure
http://data.gbif.org
Data acquisition
– Field sampling
– Digitalization
• collections
• literature
– Other sources
(citizen science, IAs,…
GBIF is data from everyone to everyone ... this includes LTER
and other observatory-based data
Data processing
– Protocols
– Standards
– QA/QC
– Documentation/Metadata
Datasets
– Publication
– Archival
– Usage
Avoid duplication > first, knowing what we know,…
Culture change > data for the imediate ends, also to be reusable
Data workflows
Information infrastructure
http://www.biomedcentral.com/1472-6785/13/16 BMC Ecology 2013, 13:16 doi:10.1186/1472-6785-13-16
Data openness in GBIF
Accesible One entry point: data.gbif.org; all data queryable
using a single interface; under a common data
profile: Darwin Core. Other ways to access data
avaliable; moving into Semantic Web
Assessable Each dataset is made available along its
corresponding metadata set; following the
Ecological metadata language (EML) Standard
describing
Intelligible GBIF is focused on “primary data” not in
summarized data or results. So analyses can be
replicated and conclusions claimed, evaluated.
Usable All data downloadable; a common data sharing
framework (GBIF’s data use agreement; specific data
set use conditions, moving into a standard, Open
Database License framework)
Information infrastructure
Data Products
Darwin Core Archives (inc.
downloads)
Maps
Combined dataGBIF Open Geospatial Consortium
services
http://data.gbif.org/countries/gbifWMSMap?wmsFilter=%3CFilter%3E
%3CAnd%3E%3CPropertyIsEqualTo%3E%3CPropertyName%3Etype%3C/Propert
yName%3E%3CLiteral%3E4%3C/Literal%3E%3C/PropertyIsEqualTo%3E%3CProp
ertyIsEqualTo%3E%3CPropertyName%3Econcept%3C/PropertyName%3E%3CLit
eral%3E252%3C/Literal%3E%3C/PropertyIsEqualTo%3E%3C/And%3E%3C/Filter%
3E
Information infrastructure
Capability infrastructure
• Knowledge base and
management, training
workshops, manuals
e-Learning, repositories
• Standard development
• Darwin Core
• GMP
• Data gateways development
Infrastructure usage
Francisco Pando
Unidad de coordinación, GBIF España
Real Jardín Botánico - CSIC
Claudio Moyano 1, 28014 Madrid
pando@gbif.es
www.gbif.es
http://creativecommons.org/licenses/by-sa/3.0/es/
http://data.gbif.org
http://www.gbif.org/
> 400M data records
> 10K datasets
> 50 country members
> 700K visits/yr. + Ms-Ks APIs requests/yr
100s of people working on it around the globe
GBIF: An infrastructure for infrastructures
No olvidemos…

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GBIF: An infrastructure for infrastructures

  • 1. GBIF: An infrastructure for infrastructures e‐Infrastructures & Biodiversity Workshop Madrid, September 19, 2013 Francisco [Paco] Pando -GBIF Spain-CSIC WP6 Related Sessions
  • 2. GBIF in one slide • Inter-governmental organization • Mission: ”To facilitate free and open access to biodiversity data worldwide, via the Internet, to underpin scientific research, conservation and sustainable development.” • 416,242,316 data records • 10,140 datasets • Since 2001
  • 3. GBIF: an intergovernmental initiative to share biodiversity information Currently 52 countries; 36 International Organisations…
  • 4. • free and open data under a common standard
  • 5. How GBIF is perceived
  • 6. But indeed Do You Think data Grows On Trees? …and produced
  • 7. Where is the infrastructure in GBIF? • Physical infrastructure – Physical infrastructure, cyberinfrastructure, human resources, and expertise, and program management and coordination. • Information infrastructure – Data workflows – Datasets – Data openness – Data products • Capability infrastructure – Knowledge base and management, training – Standard development – Data gateways development
  • 9. Data acquisition – Field sampling – Digitalization • collections • literature – Other sources (citizen science, IAs,… GBIF is data from everyone to everyone ... this includes LTER and other observatory-based data Data processing – Protocols – Standards – QA/QC – Documentation/Metadata Datasets – Publication – Archival – Usage Avoid duplication > first, knowing what we know,… Culture change > data for the imediate ends, also to be reusable Data workflows Information infrastructure
  • 11. Data openness in GBIF Accesible One entry point: data.gbif.org; all data queryable using a single interface; under a common data profile: Darwin Core. Other ways to access data avaliable; moving into Semantic Web Assessable Each dataset is made available along its corresponding metadata set; following the Ecological metadata language (EML) Standard describing Intelligible GBIF is focused on “primary data” not in summarized data or results. So analyses can be replicated and conclusions claimed, evaluated. Usable All data downloadable; a common data sharing framework (GBIF’s data use agreement; specific data set use conditions, moving into a standard, Open Database License framework) Information infrastructure
  • 12. Data Products Darwin Core Archives (inc. downloads) Maps Combined dataGBIF Open Geospatial Consortium services http://data.gbif.org/countries/gbifWMSMap?wmsFilter=%3CFilter%3E %3CAnd%3E%3CPropertyIsEqualTo%3E%3CPropertyName%3Etype%3C/Propert yName%3E%3CLiteral%3E4%3C/Literal%3E%3C/PropertyIsEqualTo%3E%3CProp ertyIsEqualTo%3E%3CPropertyName%3Econcept%3C/PropertyName%3E%3CLit eral%3E252%3C/Literal%3E%3C/PropertyIsEqualTo%3E%3C/And%3E%3C/Filter% 3E Information infrastructure
  • 13. Capability infrastructure • Knowledge base and management, training workshops, manuals e-Learning, repositories • Standard development • Darwin Core • GMP • Data gateways development
  • 15. Francisco Pando Unidad de coordinación, GBIF España Real Jardín Botánico - CSIC Claudio Moyano 1, 28014 Madrid pando@gbif.es www.gbif.es http://creativecommons.org/licenses/by-sa/3.0/es/ http://data.gbif.org http://www.gbif.org/ > 400M data records > 10K datasets > 50 country members > 700K visits/yr. + Ms-Ks APIs requests/yr 100s of people working on it around the globe