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Open Access Article Quality: Error 
Rates in References as an Indicator



                  Joseph R. Kraus
       Penrose Library, University of Denver
                    @jokrausdu
   Presentation for the Library 2.012 Conference
                  October 4, 2012
Introduction
• There are some individuals and publishers who 
  claim that Open Access journals are lower quality 
  compared to traditionally published journals.
  – “PLoS is teetering on the edge of becoming viewed as 
    a low‐quality, high‐volume publisher — a far cry from 
    the promise the initiative once held.” (Kent Anderson, 
    Scholarly Kitchen, April 27, 2010)
  – There is a “perception that open‐access journals are 
    of lower quality than traditional publications.” (Josh 
    Fischman, Chronicle of Higher Education, February 8, 
    2011)
Journal Quality vs Article Quality
• The impact factor is often touted as an 
  indicator of journal quality.  That number 
  provides the average number of citations to 
  articles in the journal over a two year span.
• It is difficult to evaluate the quality of 
  individual journal articles. The presenter 
  considers another method to determine a
  quality of individual articles.
The study
• Compare the error rates from the reference 
  sections of four Open Access articles (PLOS 
  ONE) with four articles from a commercial 
  publisher’s journal (Stem Cell Research from 
  Elsevier).
• This could be considered a method to 
  determine the carefulness of authors, and 
  hence, a quality indicator of individual articles.
Background
• In earlier research, Mandy Taha and I found 
  that reference section error rates were similar 
  between a couple of Open Access journal 
  articles and many commercial‐based journal 
  articles.
  – 2 articles were OA while another 13 articles were 
    from a two different commercial publishers 
    (Elsevier and Springer)
  – This was a not the focus of the research at the 
    time.
Article   Type of publication   Total Number of    Errors   Error rate
Number                          References

1         OA                    30                 2        6.7%

2         Commercial            27                 2        7.4%

3         Commercial            37                 1        2.7%

4         Commercial            30                 1        3.3%

5         Commercial            56                 4        7.1%

6         OA                    46                 8        17.4%

7         Commercial            41                 2        4.9%

8         Commercial            68                 0        0.0%

9         Commercial            70                 1        1.4%

10        Commercial            32                 1        3.1%

11        Commercial            58                 6        10.3%

12        Commercial            32                 1        3.1%

13        Commercial            23                 0        0.0%

14        Commercial            35                 8        22.9%

15        Commercial            56                 4        7.1%
Other research on error rates
• Article Reference Accuracy in Peer‐Reviewed Pediatric 
  Orthopaedic Literature (26%)
• Accuracy of references in the ophthalmic literature (16%)
• Accuracy of references in general surgical journals — An old 
  problem revisited (11.1%)
• The accuracy of references in paediatric journals (29.7%)
• Citation and quotation accuracy in three anatomy journals
  (27%)
• The accuracy of citation and quotation in 
  otolaryngology/head and neck surgery journals (37.5%)
• Reference List Accuracy in Social Work Journals (41.2%)
What I evaluated?
• 4 recent OA articles in the field of stem cells 
  from the journal, PLOS ONE
• The IF of PLOS ONE is 4.092 (12th out of 84 in 
  Biology)
• 4 recent articles from the journal Stem Cell 
  Research (published commercially by Elsevier)
• The IF of Stem Cell Research is 5.127 (48th out 
  of 180 in Cell Biology)
PLOS ONE articles
• Dopaminergic Neurons from Midbrain‐Specified Human 
  Embryonic Stem Cell‐Derived Neural Stem Cells Engrafted 
  in a Monkey Model of Parkinson’s Disease (53 references)
• Generation of Induced Pluripotent Stem Cells from the 
  Prairie Vole (56 references)
• Amniotic Mesenchymal Stem Cells Enhance Wound Healing 
  in Diabetic NOD/SCID Mice through High Angiogenic and 
  Engraftment Capabilities (45 references)
• Pleiotropy of Glycogen Synthase Kinase‐3 Inhibition by 
  CHIR99021 Promotes Self‐Renewal of Embryonic Stem Cells 
  from Refractory Mouse Strains (54 references)
• 208 reference total
Stem Cell Research articles
• Sonic hedgehog released from scratch‐injured 
  astrocytes is a key signal necessary but not sufficient 
  for the astrocyte de‐differentiation (38 references)
• A novel variant of Oct3/4 gene in mouse embryonic 
  stem cells (40 references)
• DUXO, a novel double homeobox transcription factor, is 
  a regulator of the gastrula organizer in human 
  embryonic stem cells (34 references)
• Proton‐gated ion channels in mouse bone marrow 
  stromal cells (41 references)
• 153 references total
Results
• PLOS ONE, 7 errors within 208 references (3.4%)
  – Volume and page information
  – Book editor, EYS instead of EY Snyder
  – Author, Kim KS instead of Kim K‐S
  – Author, Bergstorm instead of Bergstrom
  – Only one author, et al., instead of listing the first five 
    authors and then et al.
  – No year 
  – Author, Nutter LM instead of Nutter LMJ
Results
• Stem Cell Research, 9 errors within 153 
  references (5.9%)
  – 3 wrong Last names, Kaya should be Sahin Kaya;
    Altaba should be Ruiz i Altaba; Peter, H. should be 
    Holzer, P.
  – 3 Wrong page numbers
  – Wrong volume number
  – Missing author
  – Wrong article number
Findings
• Authors who write for PLOS ONE seem to be 
  just as careful with formatting their references 
  as authors who write for the Elsevier journal, 
  maybe even more so.
Items not considered errors or typos
•   PLoS One close enough to PLOS ONE
•   Brustle instead of Brüstle
•   Munoz‐Sanjuan instead of Muñoz‐Sanjuán
•   In a cited paper, the first author is listed as Da
    Wei Huang.  PubMed lists the author as Huang 
    da W. But, where should the comma go in the 
    reference list?  Should it be Huang, da W. or 
    Huang da, W.?
Notes
• For the PLOS ONE articles, I could not use the Web of 
  Science to show me which ones might have incorrect 
  information
   – The reference with Bergstorm went to the correct 
     reference with Bergstrom.
• For the Stem Cell Research articles, I could use the 
  Scopus system to indicate which references might be 
  incorrect.
   – If I saw that a reference was cited 0‐3 times in Scopus, I 
     would double check the information in that reference.
   – There could be even more errors in these four Stem Cell 
     Research articles than what I initially found.
For example
Another example
More notes
• I may not have caught all of the errors concerning 
  hyphenated first names.  (Smith AB should have 
  been listed at Smith A‐B)
• PLOS Authors correctly cited others that had 
  difficult to spell last names, such as 
  Bandyopadhyay
• PLOS Authors correctly kept British words in titles 
  (behaviour) 
• PLOS Authors correctly cited this Lancet article. 
Open Access Article Quality: Error Rates in References as an Indicator
Questions for the audience, 1 of 2
• Should I expand this research to include: 
  – More articles from PLOS?
  – Articles from other OA publishers such as BMC or 
    Hindawi or others?
  – Articles from Springer or Wiley or others?
Questions for the audience, 2 of 2
• What are other ways to indicate article 
  quality?
  – Numbers of citations via WOS and Google Scholar.  
    Been there, done that.
Questions for me?

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Open Access Article Quality: Error Rates in References as an Indicator

  • 1. Open Access Article Quality: Error  Rates in References as an Indicator Joseph R. Kraus Penrose Library, University of Denver @jokrausdu Presentation for the Library 2.012 Conference October 4, 2012
  • 2. Introduction • There are some individuals and publishers who  claim that Open Access journals are lower quality  compared to traditionally published journals. – “PLoS is teetering on the edge of becoming viewed as  a low‐quality, high‐volume publisher — a far cry from  the promise the initiative once held.” (Kent Anderson,  Scholarly Kitchen, April 27, 2010) – There is a “perception that open‐access journals are  of lower quality than traditional publications.” (Josh  Fischman, Chronicle of Higher Education, February 8,  2011)
  • 3. Journal Quality vs Article Quality • The impact factor is often touted as an  indicator of journal quality.  That number  provides the average number of citations to  articles in the journal over a two year span. • It is difficult to evaluate the quality of  individual journal articles. The presenter  considers another method to determine a quality of individual articles.
  • 4. The study • Compare the error rates from the reference  sections of four Open Access articles (PLOS  ONE) with four articles from a commercial  publisher’s journal (Stem Cell Research from  Elsevier). • This could be considered a method to  determine the carefulness of authors, and  hence, a quality indicator of individual articles.
  • 5. Background • In earlier research, Mandy Taha and I found  that reference section error rates were similar  between a couple of Open Access journal  articles and many commercial‐based journal  articles. – 2 articles were OA while another 13 articles were  from a two different commercial publishers  (Elsevier and Springer) – This was a not the focus of the research at the  time.
  • 6. Article Type of publication Total Number of  Errors Error rate Number References 1 OA 30 2 6.7% 2 Commercial 27 2 7.4% 3 Commercial 37 1 2.7% 4 Commercial 30 1 3.3% 5 Commercial 56 4 7.1% 6 OA 46 8 17.4% 7 Commercial 41 2 4.9% 8 Commercial 68 0 0.0% 9 Commercial 70 1 1.4% 10 Commercial 32 1 3.1% 11 Commercial 58 6 10.3% 12 Commercial 32 1 3.1% 13 Commercial 23 0 0.0% 14 Commercial 35 8 22.9% 15 Commercial 56 4 7.1%
  • 7. Other research on error rates • Article Reference Accuracy in Peer‐Reviewed Pediatric  Orthopaedic Literature (26%) • Accuracy of references in the ophthalmic literature (16%) • Accuracy of references in general surgical journals — An old  problem revisited (11.1%) • The accuracy of references in paediatric journals (29.7%) • Citation and quotation accuracy in three anatomy journals (27%) • The accuracy of citation and quotation in  otolaryngology/head and neck surgery journals (37.5%) • Reference List Accuracy in Social Work Journals (41.2%)
  • 8. What I evaluated? • 4 recent OA articles in the field of stem cells  from the journal, PLOS ONE • The IF of PLOS ONE is 4.092 (12th out of 84 in  Biology) • 4 recent articles from the journal Stem Cell  Research (published commercially by Elsevier) • The IF of Stem Cell Research is 5.127 (48th out  of 180 in Cell Biology)
  • 9. PLOS ONE articles • Dopaminergic Neurons from Midbrain‐Specified Human  Embryonic Stem Cell‐Derived Neural Stem Cells Engrafted  in a Monkey Model of Parkinson’s Disease (53 references) • Generation of Induced Pluripotent Stem Cells from the  Prairie Vole (56 references) • Amniotic Mesenchymal Stem Cells Enhance Wound Healing  in Diabetic NOD/SCID Mice through High Angiogenic and  Engraftment Capabilities (45 references) • Pleiotropy of Glycogen Synthase Kinase‐3 Inhibition by  CHIR99021 Promotes Self‐Renewal of Embryonic Stem Cells  from Refractory Mouse Strains (54 references) • 208 reference total
  • 10. Stem Cell Research articles • Sonic hedgehog released from scratch‐injured  astrocytes is a key signal necessary but not sufficient  for the astrocyte de‐differentiation (38 references) • A novel variant of Oct3/4 gene in mouse embryonic  stem cells (40 references) • DUXO, a novel double homeobox transcription factor, is  a regulator of the gastrula organizer in human  embryonic stem cells (34 references) • Proton‐gated ion channels in mouse bone marrow  stromal cells (41 references) • 153 references total
  • 11. Results • PLOS ONE, 7 errors within 208 references (3.4%) – Volume and page information – Book editor, EYS instead of EY Snyder – Author, Kim KS instead of Kim K‐S – Author, Bergstorm instead of Bergstrom – Only one author, et al., instead of listing the first five  authors and then et al. – No year  – Author, Nutter LM instead of Nutter LMJ
  • 12. Results • Stem Cell Research, 9 errors within 153  references (5.9%) – 3 wrong Last names, Kaya should be Sahin Kaya; Altaba should be Ruiz i Altaba; Peter, H. should be  Holzer, P. – 3 Wrong page numbers – Wrong volume number – Missing author – Wrong article number
  • 13. Findings • Authors who write for PLOS ONE seem to be  just as careful with formatting their references  as authors who write for the Elsevier journal,  maybe even more so.
  • 14. Items not considered errors or typos • PLoS One close enough to PLOS ONE • Brustle instead of Brüstle • Munoz‐Sanjuan instead of Muñoz‐Sanjuán • In a cited paper, the first author is listed as Da Wei Huang.  PubMed lists the author as Huang  da W. But, where should the comma go in the  reference list?  Should it be Huang, da W. or  Huang da, W.?
  • 15. Notes • For the PLOS ONE articles, I could not use the Web of  Science to show me which ones might have incorrect  information – The reference with Bergstorm went to the correct  reference with Bergstrom. • For the Stem Cell Research articles, I could use the  Scopus system to indicate which references might be  incorrect. – If I saw that a reference was cited 0‐3 times in Scopus, I  would double check the information in that reference. – There could be even more errors in these four Stem Cell  Research articles than what I initially found.
  • 18. More notes • I may not have caught all of the errors concerning  hyphenated first names.  (Smith AB should have  been listed at Smith A‐B) • PLOS Authors correctly cited others that had  difficult to spell last names, such as  Bandyopadhyay • PLOS Authors correctly kept British words in titles  (behaviour)  • PLOS Authors correctly cited this Lancet article. 
  • 20. Questions for the audience, 1 of 2 • Should I expand this research to include:  – More articles from PLOS? – Articles from other OA publishers such as BMC or  Hindawi or others? – Articles from Springer or Wiley or others?
  • 21. Questions for the audience, 2 of 2 • What are other ways to indicate article  quality? – Numbers of citations via WOS and Google Scholar.   Been there, done that.