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Containing the Semantic Explosion

                                          Jaimie Murdock
                                         Cameron Buckner
                                            Colin Allen

                               Indiana Philosophy Ontology (InPhO) Project
                                Indiana University – Bloomington, IN, USA
                                           inpho@indiana.edu

                                            17 April 2012




Murdock, Buckner, Allen (IU)           Containing the Semantic Explosion     17 April 2012   1 / 33
Introduction


Table of Contents


1    Introduction


2    Building Ontologies


3    Dynamic Ontology


4    Future Directions




    Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   2 / 33
Introduction


The Information Explosion




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   3 / 33
Introduction


The Information Explosion




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   4 / 33
Introduction


Guiding Principles

                                                  “Augmented intelligence”
                                                  Let humans and computers each do
                                                  only what they do best




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion     17 April 2012   5 / 33
Introduction


Guiding Principles

                                                  “Augmented intelligence”
                                                  Let humans and computers each do
                                                  only what they do best

                                                  “Guided serendipity”
                                                  Provide useful tools for scholars:
                                                      cross-referencing
                                                         semantic search
                                                         document classification
                                                         visualizations




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion          17 April 2012   5 / 33
Introduction


What Philosophers Know

Stanford Encyclopedia of
Philosophy
http://plato.stanford.edu

     1522 authors
     127 subject editors
     1315 articles since 14 Sep 1995
     1 million weekly article
     downloads




  Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   6 / 33
Introduction


What Philosophers DON’T Know

What’s in the SEP!
http://plato.stanford.edu

16.3 million words — equivalent to
27,250 pages at 600 words/page




  Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   7 / 33
Introduction


The Indiana Philosophy Ontology (InPhO) Project

https://inpho.cogs.indiana.edu/

Pragmatic attempt to organize the discipline of philosophy through a three
step process of:
     data mining
     expert verification
     machine reasoning




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   8 / 33
Introduction


The Indiana Philosophy Ontology (InPhO) Project

https://inpho.cogs.indiana.edu/




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   9 / 33
Introduction


The Indiana Philosophy Ontology (InPhO) Project

https://inpho.cogs.indiana.edu/




 Murdock, Buckner, Allen (IU)   Containing the Semantic Explosion   17 April 2012   10 / 33
Building Ontologies


Table of Contents


1    Introduction


2    Building Ontologies


3    Dynamic Ontology


4    Future Directions




    Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   11 / 33
Building Ontologies


Computational Ontology

“A body of formally represented knowledge is based on a
conceptualization: the objects, concepts, and other entities that are
presumed to exist in some area of interest and the relationships that hold
among them . . . A conceptualization is an abstract, simplified view of the
world that we wish to represent for some purpose . . . An ontology is an
explicit specification of a conceptualization.” — Gruber (1993)




 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   12 / 33
Building Ontologies


Domain Ontologies

                GOLD: General Ontology for Linguistic Description




 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   13 / 33
Building Ontologies


Domain Ontologies

                                        Gene Ontology




 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   14 / 33
Building Ontologies


Formal Ontology

     Goals: interoperability, permanence, precision
     ULOs represent the most basic, enduring features of reality — not
     just a “conceptualization”
     Upper-level ontologies (ULOs) unite domain-level ontologies




 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   15 / 33
Building Ontologies


Formal Ontology

Concerns
     “Double experts” required
     Manual design and change
     Bias, controversy




 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   16 / 33
Building Ontologies


Formal Ontology

Concerns
     “Double experts” required
     Manual design and change
     Bias, controversy
     Battlefield cluttered with ULOs . . .
            BFO, Dolce, DnS, SUMO, Cyc, GFO, IDEAS, GOL, BWW, COSMO,
            OCHRE, Gist, OBO, PROTON, IFF, MSO, Sowas, . . .
            In civil war, population suffers most . . .




 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   16 / 33
Building Ontologies


Folksonomy




     Can we induce an ontology from tagging behavior?
     “Wisdom of the crowds”
     Del.ico.us, Flickr, Wikipedia


 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   17 / 33
Building Ontologies


Folksonomy Concerns




     Uncontrolled vocabulary
            Ambiguity, idiosyncrasy, no definitions
     Tagging behavior changes over time
     Unstructured or training required
     The world is not flat — expertise matters!
 Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion   17 April 2012   18 / 33
Building Ontologies


Formal vs. Dynamic Ontology

Formal Ontology                                        Dynamic Ontology
    Large projects in business,                            Smaller, open-access projects in
    medicine, and natural sciences                         fluid domains
     Stable consensus                                        Emergent consensus
     Manual construction                                     Semi-automated construction
     Monolithic perspective                                  Multiple perspectives




  Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion         17 April 2012   19 / 33
Building Ontologies


Formal vs. Dynamic Ontology

Formal Ontology                                        Dynamic Ontology
    Large projects in business,                            Smaller, open-access projects in
    medicine, and natural sciences                         fluid domains
     Stable consensus                                        Emergent consensus
     Manual construction                                     Semi-automated construction
     Monolithic perspective                                  Multiple perspectives

Wish: Top-down quality for a bottom-up price!




  Murdock, Buckner, Allen (IU)      Containing the Semantic Explosion         17 April 2012   19 / 33
Dynamic Ontology


Table of Contents


1    Introduction


2    Building Ontologies


3    Dynamic Ontology


4    Future Directions




    Murdock, Buckner, Allen (IU)     Containing the Semantic Explosion   17 April 2012   20 / 33
Dynamic Ontology


The Indiana Philosophy Ontology (InPhO) Project

https://inpho.cogs.indiana.edu/

Pragmatic attempt to organize the discipline of philosophy through a three
step process of:
     data mining
     expert verification
     machine reasoning




 Murdock, Buckner, Allen (IU)     Containing the Semantic Explosion   17 April 2012   21 / 33
Dynamic Ontology


1. Data Mining

Use statistical techniques to make predictions about content

J-measure (n-grams)
Measures similarity using
co-occurrences




  Murdock, Buckner, Allen (IU)     Containing the Semantic Explosion   17 April 2012   22 / 33
Dynamic Ontology


1. Data Mining

Use statistical techniques to make predictions about content

J-measure (n-grams)                                            Entropy (TF-IDF)
Measures similarity using                                      Measures generality based on
co-occurrences                                                 prevalence

Further details: Niepert et al. 2007, Murdock et al. 2012




   Murdock, Buckner, Allen (IU)               Containing the Semantic Explosion     17 April 2012   22 / 33
Dynamic Ontology


2. Expert Verification




        Present hypothetical relations to users.
        Allows for untrained ontologists.
        Amazon Mechanical Turk
Further details: Allen et al. 2008, Niepert et al. 2009, Buckner et al. 2010, Eckart et al. 2010




   Murdock, Buckner, Allen (IU)                Containing the Semantic Explosion                   17 April 2012   23 / 33
Dynamic Ontology


3. Machine Reasoning




Input – Expert feedback combined with statistical data
Output – Populated ontology with taxonomic projection
Further details: Niepert et al. 2008




   Murdock, Buckner, Allen (IU)          Containing the Semantic Explosion   17 April 2012   24 / 33
Dynamic Ontology


Applications

                                                           Automated cross-referencing
                                                           Context-aware search
                                                           Citation management
                                                           Document classification
                                                           Visualizations
                                                           Change and controversy
                                                           discovery




 Murdock, Buckner, Allen (IU)     Containing the Semantic Explosion         17 April 2012   25 / 33
Dynamic Ontology


Applications

                                                           Automated cross-referencing
                                                           Context-aware search
                                                           Citation management
                                                           Document classification
                                                           Visualizations
                                                           Change and controversy
                                                           discovery
                                                           “Macroscopes” (B¨rner)
                                                                           o
                                                           Metaphilosophy




 Murdock, Buckner, Allen (IU)     Containing the Semantic Explosion         17 April 2012   25 / 33
Future Directions


Table of Contents


1    Introduction


2    Building Ontologies


3    Dynamic Ontology


4    Future Directions




    Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion   17 April 2012   26 / 33
Future Directions


CodEx Workbench

Dynamic ontology toolkit for arbitrary corpora




 Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion   17 April 2012   27 / 33
Future Directions


CodEx Workbench




 Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion   17 April 2012   28 / 33
Future Directions


CodEx Workbench




 Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion   17 April 2012   29 / 33
Future Directions


CodEx Workbench




 Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion   17 April 2012   30 / 33
Future Directions


Guiding Principles

                                                    “Augmented intelligence”
                                                    Let humans and computers each do
                                                    only what they do best.




 Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion     17 April 2012   31 / 33
Future Directions


Guiding Principles

                                                    “Augmented intelligence”
                                                    Let humans and computers each do
                                                    only what they do best.

                                                    “Guided serendipity”
                                                    Provide useful tools for scholars:
                                                        cross-referencing
                                                          semantic search
                                                          document classification
                                                          visualizations




 Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion          17 April 2012   31 / 33
Future Directions


Acknowledgements

        IUB New Frontiers in the Humanities
        NEH Digital Humanities Initiative
        NEH-DFG Bilateral Digital Humanities Program
        Digging into Data Challenge
        Alexander von Humboldt Foundation

Views expressed are the authors, and not necessarily the views of any funding angencies




   Murdock, Buckner, Allen (IU)               Containing the Semantic Explosion           17 April 2012   32 / 33
Future Directions


Acknowledgements

Project Director                                     Project Staff
Colin Allen                                          Alex Frost, Wesley Pettyjohn, Sam
                                                     Waggoner
Project Founders
Cameron Buckner, Mathias Niepert                     CogSci Support
                                                     Ruth Eberle, Nubli Kasa
Graduate Students
Jaimie Murdock, Robert Rose                          Application Consultants
                                                     Ed Zalta & Uri Nodelman (SEP),
Former Staff                                          Tony Beavers (Noesis)
Evan Boggs, Tarun Gangwani, Scott
Weingart


  Murdock, Buckner, Allen (IU)    Containing the Semantic Explosion       17 April 2012   33 / 33

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Containing the Semantic Explosion

  • 1. Containing the Semantic Explosion Jaimie Murdock Cameron Buckner Colin Allen Indiana Philosophy Ontology (InPhO) Project Indiana University – Bloomington, IN, USA inpho@indiana.edu 17 April 2012 Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 1 / 33
  • 2. Introduction Table of Contents 1 Introduction 2 Building Ontologies 3 Dynamic Ontology 4 Future Directions Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 2 / 33
  • 3. Introduction The Information Explosion Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 3 / 33
  • 4. Introduction The Information Explosion Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 4 / 33
  • 5. Introduction Guiding Principles “Augmented intelligence” Let humans and computers each do only what they do best Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 5 / 33
  • 6. Introduction Guiding Principles “Augmented intelligence” Let humans and computers each do only what they do best “Guided serendipity” Provide useful tools for scholars: cross-referencing semantic search document classification visualizations Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 5 / 33
  • 7. Introduction What Philosophers Know Stanford Encyclopedia of Philosophy http://plato.stanford.edu 1522 authors 127 subject editors 1315 articles since 14 Sep 1995 1 million weekly article downloads Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 6 / 33
  • 8. Introduction What Philosophers DON’T Know What’s in the SEP! http://plato.stanford.edu 16.3 million words — equivalent to 27,250 pages at 600 words/page Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 7 / 33
  • 9. Introduction The Indiana Philosophy Ontology (InPhO) Project https://inpho.cogs.indiana.edu/ Pragmatic attempt to organize the discipline of philosophy through a three step process of: data mining expert verification machine reasoning Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 8 / 33
  • 10. Introduction The Indiana Philosophy Ontology (InPhO) Project https://inpho.cogs.indiana.edu/ Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 9 / 33
  • 11. Introduction The Indiana Philosophy Ontology (InPhO) Project https://inpho.cogs.indiana.edu/ Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 10 / 33
  • 12. Building Ontologies Table of Contents 1 Introduction 2 Building Ontologies 3 Dynamic Ontology 4 Future Directions Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 11 / 33
  • 13. Building Ontologies Computational Ontology “A body of formally represented knowledge is based on a conceptualization: the objects, concepts, and other entities that are presumed to exist in some area of interest and the relationships that hold among them . . . A conceptualization is an abstract, simplified view of the world that we wish to represent for some purpose . . . An ontology is an explicit specification of a conceptualization.” — Gruber (1993) Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 12 / 33
  • 14. Building Ontologies Domain Ontologies GOLD: General Ontology for Linguistic Description Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 13 / 33
  • 15. Building Ontologies Domain Ontologies Gene Ontology Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 14 / 33
  • 16. Building Ontologies Formal Ontology Goals: interoperability, permanence, precision ULOs represent the most basic, enduring features of reality — not just a “conceptualization” Upper-level ontologies (ULOs) unite domain-level ontologies Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 15 / 33
  • 17. Building Ontologies Formal Ontology Concerns “Double experts” required Manual design and change Bias, controversy Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 16 / 33
  • 18. Building Ontologies Formal Ontology Concerns “Double experts” required Manual design and change Bias, controversy Battlefield cluttered with ULOs . . . BFO, Dolce, DnS, SUMO, Cyc, GFO, IDEAS, GOL, BWW, COSMO, OCHRE, Gist, OBO, PROTON, IFF, MSO, Sowas, . . . In civil war, population suffers most . . . Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 16 / 33
  • 19. Building Ontologies Folksonomy Can we induce an ontology from tagging behavior? “Wisdom of the crowds” Del.ico.us, Flickr, Wikipedia Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 17 / 33
  • 20. Building Ontologies Folksonomy Concerns Uncontrolled vocabulary Ambiguity, idiosyncrasy, no definitions Tagging behavior changes over time Unstructured or training required The world is not flat — expertise matters! Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 18 / 33
  • 21. Building Ontologies Formal vs. Dynamic Ontology Formal Ontology Dynamic Ontology Large projects in business, Smaller, open-access projects in medicine, and natural sciences fluid domains Stable consensus Emergent consensus Manual construction Semi-automated construction Monolithic perspective Multiple perspectives Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 19 / 33
  • 22. Building Ontologies Formal vs. Dynamic Ontology Formal Ontology Dynamic Ontology Large projects in business, Smaller, open-access projects in medicine, and natural sciences fluid domains Stable consensus Emergent consensus Manual construction Semi-automated construction Monolithic perspective Multiple perspectives Wish: Top-down quality for a bottom-up price! Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 19 / 33
  • 23. Dynamic Ontology Table of Contents 1 Introduction 2 Building Ontologies 3 Dynamic Ontology 4 Future Directions Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 20 / 33
  • 24. Dynamic Ontology The Indiana Philosophy Ontology (InPhO) Project https://inpho.cogs.indiana.edu/ Pragmatic attempt to organize the discipline of philosophy through a three step process of: data mining expert verification machine reasoning Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 21 / 33
  • 25. Dynamic Ontology 1. Data Mining Use statistical techniques to make predictions about content J-measure (n-grams) Measures similarity using co-occurrences Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 22 / 33
  • 26. Dynamic Ontology 1. Data Mining Use statistical techniques to make predictions about content J-measure (n-grams) Entropy (TF-IDF) Measures similarity using Measures generality based on co-occurrences prevalence Further details: Niepert et al. 2007, Murdock et al. 2012 Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 22 / 33
  • 27. Dynamic Ontology 2. Expert Verification Present hypothetical relations to users. Allows for untrained ontologists. Amazon Mechanical Turk Further details: Allen et al. 2008, Niepert et al. 2009, Buckner et al. 2010, Eckart et al. 2010 Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 23 / 33
  • 28. Dynamic Ontology 3. Machine Reasoning Input – Expert feedback combined with statistical data Output – Populated ontology with taxonomic projection Further details: Niepert et al. 2008 Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 24 / 33
  • 29. Dynamic Ontology Applications Automated cross-referencing Context-aware search Citation management Document classification Visualizations Change and controversy discovery Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 25 / 33
  • 30. Dynamic Ontology Applications Automated cross-referencing Context-aware search Citation management Document classification Visualizations Change and controversy discovery “Macroscopes” (B¨rner) o Metaphilosophy Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 25 / 33
  • 31. Future Directions Table of Contents 1 Introduction 2 Building Ontologies 3 Dynamic Ontology 4 Future Directions Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 26 / 33
  • 32. Future Directions CodEx Workbench Dynamic ontology toolkit for arbitrary corpora Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 27 / 33
  • 33. Future Directions CodEx Workbench Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 28 / 33
  • 34. Future Directions CodEx Workbench Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 29 / 33
  • 35. Future Directions CodEx Workbench Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 30 / 33
  • 36. Future Directions Guiding Principles “Augmented intelligence” Let humans and computers each do only what they do best. Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 31 / 33
  • 37. Future Directions Guiding Principles “Augmented intelligence” Let humans and computers each do only what they do best. “Guided serendipity” Provide useful tools for scholars: cross-referencing semantic search document classification visualizations Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 31 / 33
  • 38. Future Directions Acknowledgements IUB New Frontiers in the Humanities NEH Digital Humanities Initiative NEH-DFG Bilateral Digital Humanities Program Digging into Data Challenge Alexander von Humboldt Foundation Views expressed are the authors, and not necessarily the views of any funding angencies Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 32 / 33
  • 39. Future Directions Acknowledgements Project Director Project Staff Colin Allen Alex Frost, Wesley Pettyjohn, Sam Waggoner Project Founders Cameron Buckner, Mathias Niepert CogSci Support Ruth Eberle, Nubli Kasa Graduate Students Jaimie Murdock, Robert Rose Application Consultants Ed Zalta & Uri Nodelman (SEP), Former Staff Tony Beavers (Noesis) Evan Boggs, Tarun Gangwani, Scott Weingart Murdock, Buckner, Allen (IU) Containing the Semantic Explosion 17 April 2012 33 / 33