QTPIE: A new charge model for arbitrary geometries and systems Jiahao Chen and Todd J. Martínez Department of Chemistry and the Beckman Institute Poster: 7:30-9:30 tonight, BCEC Exhibit Hall B2, #107
Polarization effects are important in classical molecular dynamics Structure of water improved when polarization is accounted for, even if implicitly 1 Needed to describe local environmental effects, e.g. hydration of  chloride  in water clusters 2 1 Berendsen, H. J. C.; Grigera, J. R.; Straatsma, T. P.  J. Phys. Chem.   91 ,  1987 , 6269-71. 2 Stuart, S. J.; Berne, B. J.  J. Phys. Chem.   100 ,  1996 , 11934 -11943. OPLS/AA Non-polarizable force field TIP4P/FQ Polarizable force field
Polarizable point dipole models How to represent explicit polarization in classical MD? Review: Yu, H.; van Gunsteren, W. F.;  Comput. Phys. Commun.   172  (2005), 69-85. +q ,    -q ,    Induced dipoles  calculated from  site polarizabilities   fixed calculated
How to represent explicit polarization in classical MD? Polarizable point dipole models Drude oscillator/charge-on-spring/shell models Review: Yu, H.; van Gunsteren, W. F.;  Comput. Phys. Commun.   172  (2005), 69-85. spring  k charge -Q >> q mass m << M charge q+Q mass M-m calculated
Polarizable point dipole models Drude oscillator/charge-on-spring/shell models Electronegativity equalization/charge equilibration/fluctuating-charge models Model polarization as a type of charge transfer How to represent explicit polarization in classical MD? Review: Yu, H.; van Gunsteren, W. F.;  Comput. Phys. Commun.   172  (2005), 69-85. calculated
Fluctuating-charge models map molecules onto electrical circuits screened Coulomb interaction chemical hardness electro- negativity molecule More electropositive More electronegative 0 V         -  Voltage  + electric potential (inverse) capacitance electrical circuits Coulomb interaction
QEq, a typical fluctuating-charge model Energy minimized with respect to charges  subject to constraint  on total charge  Q Screened Coulomb interactions s -type Slater orbitals Rappé, A. K.; Goddard, W. A. , J. Phys. Chem.   95  (1991), 3358-3363 .
Limitations of QEq No out-of-plane dipole polarizability Overestimates in-plane dipole polarizability Unphysical charge distributions predicted for non-equilibrium geometries Cause: no distance penalty for charge transfer voltage distance        
QTPIE, our new charge model Charge-transfer with polarization current equilibration Voltage  attenuates  with increasing distance J. Chen and T. J. Martínez , Chem. Phys. Lett.   438  (2007) 315 -3 20. voltage distance        
Features of QTPIE Correct dissociation limit for uncharged fragments Minimally parameterized in terms of chemically meaningful quantities (electronegativites and hardnesses) Can obtain results for electrostatic properties comparable to those from more sophisticated force fields
Dissocation of H 2 O in QEq and QTPIE Correct asymptotics Charge separation on OH fragment retained equilibrium geometry R QEq QTPIE ab initio QTPIE prediction improved over QEq  without  reoptimizing parameters   ab initio  = DMA charges from CASSCF(6/4)/STO-3G wavefunction
Cooperative polarization in water Dipole moment of water increases  from 1.854 Debye 1  in gas phase  to  2.95±0.20 Debye 2  at r.t.p. liquid phase Polarization enhances dipole moments Water models with implicit or no polarization can’t describe local electrical fluctuations 1 D. R. Lide,  CRC Handbook of Chemistry and Physics , 73rd ed.,  1992 . 2 A. V. Gubskaya and P. G. Kusalik,  J. Chem. Phys.   117  (2002) 5290-5302. +
Creating a water model with QTPIE Replace implicit polarization in TIP3P 1  by explicitly polarizable charges using QTPIE and QEq  QTPIE, QEq implemented in TINKER Reparameterized to reproduce  ab initio  dipole moments and anisotropic polarizabilities of a  single water molecule ab initio  = DF-LMP2/aug-cc-pVDZ 1 Jorgensen, W. L.;  et al. ,  J. Chem. Phys.   79  (1983) 926-935.
New parameters for TIP3P/QTPIE and TIP3P/QEq Mulliken electronegativities  and Parr-Pearson hardnesses 1 Rappé, A. K.; Goddard, W. A. , J. Phys. Chem.   95  (1991), 3358-3363. 2 Calculated from ionization potentials and electron affinities in NIST Webbook. 12.157 20.680 20.680 13.364   12.844 10.125 10.125 13.890   7.540 8.125 8.285 8.741   7.176 5.116 4.960 4.528   Expt. 2 QEq QTPIE Original 1 eV
Dipole response of linear water chains Use parameters from single water molecule to model chains of water molecules Compared with: Gas phase experimental data 1 Ab initio DF-LMP2/aug-cc-pVDZ AMOEBA 2 , a point polarizable dipole force field 1 Murphy, W. F.  J. Chem. Phys.   67 ,  1977 , 5877-5882. 2 Ren, P.; Ponder, J. W.  J. Phys. Chem. B   107 ,  2003 , 5933-5947.. planar (0° twist) twisted (90°)
Mean dipole moment per water planar
Mean dipole moment per water twisted
TIP3P/QTPIE predicts dipoles well Simpler, yet comparable to  AMOEBA planar twisted 4 4 3 14 No. of nonzero electrostatics parameters TIP3P/QTPIE TIP3P/QEq TIP3P AMOEBA Water model
Conclusions Distance-dependent electronegativity difference leads to correct asympotic behavior of dissociating neutral fragments New TIP3P/QTPIE water model predicts dipole moments better than TIP3P/QEq  TIP3P/QTPIE models polarization effects with results comparable to more expensive force fields
Acknowledgments Prof. Todd J. Martínez Martínez Group Funding from DOE DE-FG02-05ER46260 Poster Tonight 7:30-9:30 BCEC Exhibit Hall B2 #107
Out-of-plane polarizability per water planar
Out-of-plane polarizability per water twisted
In-plane polarizability per water planar
In-plane polarizability per water twisted
Dipole-axis polarizability per water planar
Dipole-axis polarizability per water twisted
TIP3P/QTPIE doesn’t predict polarizabilities well Identical to TIP3P/QEq No out of plane polarizability In-plane components underestimated twisted planar out of plane in plane dipole axis

More Related Content

PPTX
jz300841u Fleming Presentation
PPTX
Ion channels poisson fermi for ima july 23 1 2015
DOCX
exp3 battery
PDF
DOCX
Mcq eutectoid and peritictic reaction
PDF
First principles design of lithium superionic conductors
PPT
Viscous and Induced Heating in Plasma Focus Plasmoids
PDF
jz300841u Fleming Presentation
Ion channels poisson fermi for ima july 23 1 2015
exp3 battery
Mcq eutectoid and peritictic reaction
First principles design of lithium superionic conductors
Viscous and Induced Heating in Plasma Focus Plasmoids

What's hot (8)

PDF
Lattice Parameters and Debye Temperature of Naclx Nabry-X Kcl1-Y Ternary Mixe...
PDF
Properties of MBE-Grown ZnBeSe: Study of Be Isoelectronic Traps and of Dopant...
PPTX
Study of Ammonia Borane - Polyvinylpyrrolidone
PDF
Analysis of Pseudogap in Superconductors
PDF
Thermodynamics Hw#4
PDF
Simulating Membrane Channels, E. Tajkhorshid, Part 2
PPT
Kinetic theory of gases
PPT
AP Chemistry Chapter 19 Sample Exercises
Lattice Parameters and Debye Temperature of Naclx Nabry-X Kcl1-Y Ternary Mixe...
Properties of MBE-Grown ZnBeSe: Study of Be Isoelectronic Traps and of Dopant...
Study of Ammonia Borane - Polyvinylpyrrolidone
Analysis of Pseudogap in Superconductors
Thermodynamics Hw#4
Simulating Membrane Channels, E. Tajkhorshid, Part 2
Kinetic theory of gases
AP Chemistry Chapter 19 Sample Exercises
Ad

Viewers also liked (18)

ZIP
Resolving the dissociation catastrophe in fluctuating-charge models
PDF
Understanding ECG signals in the MIMIC II database
PDF
Julia, genomics data and their principal components
PDF
Group meeting 3/11 - sticky electrons
PPT
Dynamical localization in the microwave ionization of Rydberg atoms
PDF
Constructing a rigorous fluctuating-charge model for molecular mechanics
PDF
Python as number crunching code glue
PDF
Technical computing in Julia
PPT
Excitation Energy Transfer In Photosynthetic Membranes
PDF
Contrasts
PDF
Julia? why a new language, an an application to genomics data analysis
PPT
this talk has only three equations
PDF
Polarization and charge transfer in classical molecular dynamics
PDF
Representing molecules as atomic-scale electrical circuits with fluctuating-c...
PDF
Programming languages: history, relativity and design
PDF
Julia: compiler and community
PDF
Methods for computing partial charges
PDF
What's next in Julia
Resolving the dissociation catastrophe in fluctuating-charge models
Understanding ECG signals in the MIMIC II database
Julia, genomics data and their principal components
Group meeting 3/11 - sticky electrons
Dynamical localization in the microwave ionization of Rydberg atoms
Constructing a rigorous fluctuating-charge model for molecular mechanics
Python as number crunching code glue
Technical computing in Julia
Excitation Energy Transfer In Photosynthetic Membranes
Contrasts
Julia? why a new language, an an application to genomics data analysis
this talk has only three equations
Polarization and charge transfer in classical molecular dynamics
Representing molecules as atomic-scale electrical circuits with fluctuating-c...
Programming languages: history, relativity and design
Julia: compiler and community
Methods for computing partial charges
What's next in Julia
Ad

Similar to QTPIE: A new charge model for arbitrary geometries and systems (20)

PPT
QTPIE: A fluctuating-charge model for molecular systems with correct asymptotics
PDF
Variation of Fundamental Constants
PPT
Boettcher-ICMR-Lecture-2012-UCSB-Semiconductor-Photocatalysis-and-Water-Split...
PPT
Boettcher-ICMR-Lecture-2012-UCSB-Semiconductor-Photocatalysis-and-Water-Split...
PDF
NANO266 - Lecture 5 - Exchange-Correlation Functionals
PDF
NANO266 - Lecture 13 - Ab initio molecular dyanmics
PPT
QTPIE and water (Part 1)
PDF
Prof Tom Trainor (University of Washington, Seattle, USA)
PPTX
Topic 2_Cell Potential_April2024444.pptx
PDF
Seminar @ CUNPA 2013.10.18
PDF
Lecture 25 - Basic Components and Electrodes for Li-ion batteries.pdf
PDF
Supporting electrolyte
PDF
Searches for spin-dependent short-range forces
PPT
Perugia giazotto
PPT
Perugia giazotto
PPT
2DIAGNOSTICSe-p.ppt
PDF
NANO266 - Lecture 14 - Transition state modeling
PPTX
ACSSA Halide-Water Poster
PPTX
APS D63.00002 Tight Binding Simulation of Finite Temperature Electronic Struc...
PDF
VASP-lecture-Hybrids functionals LDA GFGA.pdf
QTPIE: A fluctuating-charge model for molecular systems with correct asymptotics
Variation of Fundamental Constants
Boettcher-ICMR-Lecture-2012-UCSB-Semiconductor-Photocatalysis-and-Water-Split...
Boettcher-ICMR-Lecture-2012-UCSB-Semiconductor-Photocatalysis-and-Water-Split...
NANO266 - Lecture 5 - Exchange-Correlation Functionals
NANO266 - Lecture 13 - Ab initio molecular dyanmics
QTPIE and water (Part 1)
Prof Tom Trainor (University of Washington, Seattle, USA)
Topic 2_Cell Potential_April2024444.pptx
Seminar @ CUNPA 2013.10.18
Lecture 25 - Basic Components and Electrodes for Li-ion batteries.pdf
Supporting electrolyte
Searches for spin-dependent short-range forces
Perugia giazotto
Perugia giazotto
2DIAGNOSTICSe-p.ppt
NANO266 - Lecture 14 - Transition state modeling
ACSSA Halide-Water Poster
APS D63.00002 Tight Binding Simulation of Finite Temperature Electronic Struc...
VASP-lecture-Hybrids functionals LDA GFGA.pdf

Recently uploaded (20)

PPTX
O2C Customer Invoices to Receipt V15A.pptx
PDF
Five Habits of High-Impact Board Members
PDF
Transform Your ITIL® 4 & ITSM Strategy with AI in 2025.pdf
PDF
A comparative study of natural language inference in Swahili using monolingua...
PDF
Hybrid horned lizard optimization algorithm-aquila optimizer for DC motor
PDF
STKI Israel Market Study 2025 version august
PDF
How ambidextrous entrepreneurial leaders react to the artificial intelligence...
PPTX
observCloud-Native Containerability and monitoring.pptx
PDF
WOOl fibre morphology and structure.pdf for textiles
PPTX
Benefits of Physical activity for teenagers.pptx
PDF
ENT215_Completing-a-large-scale-migration-and-modernization-with-AWS.pdf
PDF
sustainability-14-14877-v2.pddhzftheheeeee
PDF
DASA ADMISSION 2024_FirstRound_FirstRank_LastRank.pdf
PDF
1 - Historical Antecedents, Social Consideration.pdf
PDF
August Patch Tuesday
PPTX
The various Industrial Revolutions .pptx
PDF
TrustArc Webinar - Click, Consent, Trust: Winning the Privacy Game
PDF
Assigned Numbers - 2025 - Bluetooth® Document
PDF
Microsoft Solutions Partner Drive Digital Transformation with D365.pdf
PDF
Enhancing emotion recognition model for a student engagement use case through...
O2C Customer Invoices to Receipt V15A.pptx
Five Habits of High-Impact Board Members
Transform Your ITIL® 4 & ITSM Strategy with AI in 2025.pdf
A comparative study of natural language inference in Swahili using monolingua...
Hybrid horned lizard optimization algorithm-aquila optimizer for DC motor
STKI Israel Market Study 2025 version august
How ambidextrous entrepreneurial leaders react to the artificial intelligence...
observCloud-Native Containerability and monitoring.pptx
WOOl fibre morphology and structure.pdf for textiles
Benefits of Physical activity for teenagers.pptx
ENT215_Completing-a-large-scale-migration-and-modernization-with-AWS.pdf
sustainability-14-14877-v2.pddhzftheheeeee
DASA ADMISSION 2024_FirstRound_FirstRank_LastRank.pdf
1 - Historical Antecedents, Social Consideration.pdf
August Patch Tuesday
The various Industrial Revolutions .pptx
TrustArc Webinar - Click, Consent, Trust: Winning the Privacy Game
Assigned Numbers - 2025 - Bluetooth® Document
Microsoft Solutions Partner Drive Digital Transformation with D365.pdf
Enhancing emotion recognition model for a student engagement use case through...

QTPIE: A new charge model for arbitrary geometries and systems

  • 1. QTPIE: A new charge model for arbitrary geometries and systems Jiahao Chen and Todd J. Martínez Department of Chemistry and the Beckman Institute Poster: 7:30-9:30 tonight, BCEC Exhibit Hall B2, #107
  • 2. Polarization effects are important in classical molecular dynamics Structure of water improved when polarization is accounted for, even if implicitly 1 Needed to describe local environmental effects, e.g. hydration of chloride in water clusters 2 1 Berendsen, H. J. C.; Grigera, J. R.; Straatsma, T. P. J. Phys. Chem. 91 , 1987 , 6269-71. 2 Stuart, S. J.; Berne, B. J. J. Phys. Chem. 100 , 1996 , 11934 -11943. OPLS/AA Non-polarizable force field TIP4P/FQ Polarizable force field
  • 3. Polarizable point dipole models How to represent explicit polarization in classical MD? Review: Yu, H.; van Gunsteren, W. F.; Comput. Phys. Commun. 172 (2005), 69-85. +q ,   -q ,   Induced dipoles calculated from site polarizabilities  fixed calculated
  • 4. How to represent explicit polarization in classical MD? Polarizable point dipole models Drude oscillator/charge-on-spring/shell models Review: Yu, H.; van Gunsteren, W. F.; Comput. Phys. Commun. 172 (2005), 69-85. spring k charge -Q >> q mass m << M charge q+Q mass M-m calculated
  • 5. Polarizable point dipole models Drude oscillator/charge-on-spring/shell models Electronegativity equalization/charge equilibration/fluctuating-charge models Model polarization as a type of charge transfer How to represent explicit polarization in classical MD? Review: Yu, H.; van Gunsteren, W. F.; Comput. Phys. Commun. 172 (2005), 69-85. calculated
  • 6. Fluctuating-charge models map molecules onto electrical circuits screened Coulomb interaction chemical hardness electro- negativity molecule More electropositive More electronegative 0 V         - Voltage + electric potential (inverse) capacitance electrical circuits Coulomb interaction
  • 7. QEq, a typical fluctuating-charge model Energy minimized with respect to charges subject to constraint on total charge Q Screened Coulomb interactions s -type Slater orbitals Rappé, A. K.; Goddard, W. A. , J. Phys. Chem. 95 (1991), 3358-3363 .
  • 8. Limitations of QEq No out-of-plane dipole polarizability Overestimates in-plane dipole polarizability Unphysical charge distributions predicted for non-equilibrium geometries Cause: no distance penalty for charge transfer voltage distance        
  • 9. QTPIE, our new charge model Charge-transfer with polarization current equilibration Voltage attenuates with increasing distance J. Chen and T. J. Martínez , Chem. Phys. Lett. 438 (2007) 315 -3 20. voltage distance        
  • 10. Features of QTPIE Correct dissociation limit for uncharged fragments Minimally parameterized in terms of chemically meaningful quantities (electronegativites and hardnesses) Can obtain results for electrostatic properties comparable to those from more sophisticated force fields
  • 11. Dissocation of H 2 O in QEq and QTPIE Correct asymptotics Charge separation on OH fragment retained equilibrium geometry R QEq QTPIE ab initio QTPIE prediction improved over QEq without reoptimizing parameters ab initio = DMA charges from CASSCF(6/4)/STO-3G wavefunction
  • 12. Cooperative polarization in water Dipole moment of water increases from 1.854 Debye 1 in gas phase to 2.95±0.20 Debye 2 at r.t.p. liquid phase Polarization enhances dipole moments Water models with implicit or no polarization can’t describe local electrical fluctuations 1 D. R. Lide, CRC Handbook of Chemistry and Physics , 73rd ed., 1992 . 2 A. V. Gubskaya and P. G. Kusalik, J. Chem. Phys. 117 (2002) 5290-5302. +
  • 13. Creating a water model with QTPIE Replace implicit polarization in TIP3P 1 by explicitly polarizable charges using QTPIE and QEq QTPIE, QEq implemented in TINKER Reparameterized to reproduce ab initio dipole moments and anisotropic polarizabilities of a single water molecule ab initio = DF-LMP2/aug-cc-pVDZ 1 Jorgensen, W. L.; et al. , J. Chem. Phys. 79 (1983) 926-935.
  • 14. New parameters for TIP3P/QTPIE and TIP3P/QEq Mulliken electronegativities and Parr-Pearson hardnesses 1 Rappé, A. K.; Goddard, W. A. , J. Phys. Chem. 95 (1991), 3358-3363. 2 Calculated from ionization potentials and electron affinities in NIST Webbook. 12.157 20.680 20.680 13.364   12.844 10.125 10.125 13.890   7.540 8.125 8.285 8.741   7.176 5.116 4.960 4.528   Expt. 2 QEq QTPIE Original 1 eV
  • 15. Dipole response of linear water chains Use parameters from single water molecule to model chains of water molecules Compared with: Gas phase experimental data 1 Ab initio DF-LMP2/aug-cc-pVDZ AMOEBA 2 , a point polarizable dipole force field 1 Murphy, W. F. J. Chem. Phys. 67 , 1977 , 5877-5882. 2 Ren, P.; Ponder, J. W. J. Phys. Chem. B 107 , 2003 , 5933-5947.. planar (0° twist) twisted (90°)
  • 16. Mean dipole moment per water planar
  • 17. Mean dipole moment per water twisted
  • 18. TIP3P/QTPIE predicts dipoles well Simpler, yet comparable to AMOEBA planar twisted 4 4 3 14 No. of nonzero electrostatics parameters TIP3P/QTPIE TIP3P/QEq TIP3P AMOEBA Water model
  • 19. Conclusions Distance-dependent electronegativity difference leads to correct asympotic behavior of dissociating neutral fragments New TIP3P/QTPIE water model predicts dipole moments better than TIP3P/QEq TIP3P/QTPIE models polarization effects with results comparable to more expensive force fields
  • 20. Acknowledgments Prof. Todd J. Martínez Martínez Group Funding from DOE DE-FG02-05ER46260 Poster Tonight 7:30-9:30 BCEC Exhibit Hall B2 #107
  • 27. TIP3P/QTPIE doesn’t predict polarizabilities well Identical to TIP3P/QEq No out of plane polarizability In-plane components underestimated twisted planar out of plane in plane dipole axis