Rdf data-model-and-storage

RDF, RDFS and OWL:
Graph Data Models for the
Semantic Web

Semantic Web: The Idea
Semantic Web
 does not mean computers are going to understand the
meaning of everything on the web
 does mean that we can create some standards ways of
representing web-information such the logical pieces of
meaning can be mechanically manipulated by programs
(applications) in a generic way
 One such mechanism involves representing, manipulating and
using metadata

Linked Data: The Vision
Linked Data is about using the Web to
connect related data that wasn't
previously linked, or using the Web to
lower the barriers to linking data
currently linked using other methods.

Is there any reason to connect
these two pages?

What is RDF?
RDF (Resource Description Framework) was
originally designed to develop metadata for the
web
Example: my SDSC web page
http://www.sdsc.edu/~gupta
Amarnath Gupta gupta@sdsc.edu
dcterms:creator
name email
The individual whose name is
Amarnath Gupta, email
<gupta@sdsc.edu>, is the creator
of http://www.sdsc.edu/~gupta

Another Example
A book website
Now a program can “integrate”
information from the two sites
correctly (i.e., by URI and not by
value)
http://www.morganclaypool.com/
doi/abs/10.2200/S00374ED1V0
1Y201107DTM019
http://www.sdsc.edu/~gupta
dcterms:creator
dcterms:title
http://www.ics.uci.edu/faculty/profil
es/view_faculty.php?ucinetid=jain
dcterms:creator
Managing Event Information:
Modeling, Retrieval, and
Applications
Morgan &
Claypool
dcterms:publisher
name
URI Literal
Anonymous Node
Label from
Vocabulary

URIs
Name Definition Example
URL a character string that specifies
where a known resource is
available on the Internet and the
mechanism for retrieving it
scheme://username:password@domai
n:port/path?query_string#fragment_id
URI A character string used to identify a
name or a resource on the Internet
ftp://example.org/resource.txt
/relative/URI/with/absolute/path/to/res
ource.txt
URN A character string that designates
the universal name of something.
URNs usually use namespaces
urn:isan:0000-0000-9E59-0000-O-
0000-0000-2

Data Types in RDF
A data type is:
A set of values called the value space
A set of character strings called the lexical space
A lexical to value mapping
RDF has no built-in set of data types of its own
In RDF, one uses typed literals and explicitly indicates
what datatype should be used to interpret it
RDF takes many of its data types from XML Schema
 xsd:string, xsd:boolean, xsd:date
 ucsd:85740 exterms:age “31"^^xsd:integer
 ucsd:85740 exterms:age “pumpkin"^^xsd:integer
Valid and correct
Valid but incorrect

Representing the RDF graph (N-Triples)
Representing as a Collection of Edges
Subject Predicate Object
http://www.morganclaypool.com/doi/a
bs/10.2200/S00374ED1V01Y201107
DTM019
dcterms:creator http://www.sdsc.edu/~gupta
bs/10.2200/S00374ED1V01Y201107
DTM019
dcterms:title Managing Event Information:
Modeling, Retrieval, and
Applications
bs/10.2200/S00374ED1V01Y201107
DTM019
dcterms:publisher :_anon1
:_anon1 name Morgan & Claypool
bs/10.2200/S00374ED1V01Y201107
DTM019
dcterms:creator http://www.ics.uci.edu/faculty/pr
ofiles/view_faculty.php?ucinetid
=jain

Representing the RDF graph (XML)
Representing as Node Properties
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:edu="http://www.example.org/">
<rdf:Description
rdf:about="http://www.morganclaypool.com/doi/abs/10.2200/S00374ED1V01Y201107DTM019">
<dcterms:title>Managing Event Information: Modeling, Retrieval, and
Applications</dcterms:title>
<dcterms:creator rdf:resource=“http://www.sdsc.edu/~gupta”/>
<dcterms:creator rdf:resource=“http://www.ics.uci.edu/faculty/profiles/view_faculty.php?ucinetid=jain”/>
<dcterms:publisher rdf:resource =“:_anon1”/>
</rdf:Description>
…

Using Data Types in RDF/XML
A typical data record
<rdf:Description rdf:ID="item10245">
<exterms:model rdf:datatype="&xsd;string">Overnighter</exterms:model>
<exterms:sleeps rdf:datatype="&xsd;integer">2</exterms:sleeps>
<exterms:weight rdf:datatype="&xsd;decimal">2.4</exterms:weight>
<exterms:packedSize rdf:datatype="&xsd;integer">784</exterms:packedSize>
</rdf:Description>

RDF and Nested Relations
Consider a relation Product with a tuple-valued
attribute
The RDF way
Name ID Weight
Amount Unit
ABC 123 34.57 kg
Product:123 name ABC
Product:123 weight _wt1
_wt1 rdf:value “34.57”^^xsd:decimal
_wt1 unit kg

RDF “Collections”
RDF Collection
The s:students node
Has the built-in type rdf:List
Is a named closed collection
xmlns:s="http://example.org/students/vocab#">
<rdf:Description rdf:about="http://example.org/courses/6.001">
<s:students rdf:parseType="Collection">
<rdf:Description rdf:about=“s:student/Amy"/>
<rdf:Description rdf:abouts:student/Mohamed"/>
<rdf:Description rdf:about=“s:student/Johann"/>
</s:students>
</rdf:Description>

<rdf:Description rdf:about="http://example.org/courses/6.001">
<s:students rdf:nodeID="sch1"/>
</rdf:Description>
<rdf:Description rdf:nodeID="sch1">
<rdf:first rdf:resource=“s:student/Amy"/>
<rdf:rest rdf:nodeID="sch2"/>
</rdf:Description>
<rdf:first rdf:resource=“s:student/Mohamed"/>
<rdf:rest rdf:nodeID="sch3"/>
</rdf:Description>
<rdf:first rdf:resource=“s:student/Johann"/>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-
ns#nil"/>
</rdf:Description>
RDF “Collections” is a List

RDF “Containers”
rdf:bag – a named unordered collection
container membership
properties have names
of the form rdf:_n
Yes, it is
still
unordered

RDF “Containers”
rdf:alt – represents alternatives (or choices) in a
set
The semantics of rdf:alt
An Alt container is intended to have at least one
member, identified by the property rdf:_1.
This member is intended to be considered as the
default or preferred value.

Reification
Sometimes we want to make a statement about a statement
 “John’s hair-color is black” says his passport.
 The main statement as a triple
 (John hair-color black)
 Now, treat it as an entity called s100
 s100:(John hair-color black)
 Next, make a statement about st
 (John-passport makes-claim s100)
The process is called reification
 executed through rdf:statement
s100 rdf:type rdf:Statement
s100 rdf:subject URI(John)
S100 rdf:predicate URI(hair-color )
s100 rdf:object URI(black)
URI(John) URI(hair-color) URI(black)
S100 makes-claim URI(John-passport)

RDF Schema (RDFS)
RDF Schema provides a type system for RDF
Influenced by objected-oriented languages
Classes
any resource having an rdf:type property whose value
is the resource rdfs:Class.
Instance definition
Subclass definition
ex:MotorVehicle rdf:type rdfs:Class
ex:myVehicle rdf:type ex:MotorVehicle
ex:Van rdf:type rdfs:Class
ex:Van rdfs:subClassOf ex:MotorVehicle
Transitive property?
A class may be a subclass of multiple classes

RDFS in XML
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xml:base="http://example.org/schemas/vehicles">
<rdfs:Class rdf:ID="MotorVehicle"/>
<rdfs:Class rdf:ID="PassengerVehicle">
<rdfs:subClassOf rdf:resource="#MotorVehicle"/>
</rdfs:Class>
<rdfs:Class rdf:ID="Truck">
</rdfs:Class>
<rdfs:Class rdf:ID="Van">
</rdfs:Class>
<rdfs:Class rdf:ID="MiniVan">
<rdfs:subClassOf rdf:resource="#Van"/>
<rdfs:subClassOf rdf:resource="#PassengerVehicle"/>
</rdfs:Class>
</rdf:RDF>

Properties of Properties in RDFS
Property name Comment Domain Range
rdf:type
The subject is an instance
of a class.
rdfs:Resource rdfs:Class
rdfs:subClassOf
The subject is a subclass
of a class.
rdfs:Class rdfs:Class
rdfs:subPropertyOf
The subject is a
subproperty of a property.
rdf:Property rdf:Property
rdfs:domain
A domain of the subject
property.
rdf:Property rdfs:Class
rdfs:range
A range of the subject
property.
rdf:Property rdfs:Class
rdfs:label
A human-readable name
for the subject.
rdfs:Resource rdfs:Literal
rdfs:comment
A description of the
subject resource.
rdfs:Resource rdfs:Literal
rdfs:member
A member of the subject
resource.
rdfs:Resource rdfs:Resource
rdfs:isDefinedBy
The definition of the
subject resource.
rdfs:Resource rdfs:Resource

RDFS Subproperties
R1 is a property with domain X and range Y
R2 is a subproperty R1 if
(a R2 b) implies
 (a R1 b)
 typeOf(a) ≤ X, typeOf(b) ≤ Y
close_friend_of ≤ friend_of ≤ related_to ≤ knows
supervisor_of ≤ colleague_of ≤ works_with ≤ knows
John Karen Bobby Pierce
cfo knows fo
Abe
so
ww
Sam

RDFS Inferences
 Existential Rule. If μ : G → G is a mapping,
 then G  G
 Typing Rules. These are type inference rules
 1. (a dom c), (a x y)  (x type c)
 2. (a range d), (x a y)  (y type d)
 Subclass Rules. sc is reflexive and transitive
 1. (a type class)  (a sc a)
 2. (a sc b), (b sc c)  (a sc c)
 3. (a sc b), (x type a)  (x type b)
 Subproperty Rules. sp is reflexive and transitive
 1. (a type prop)  (a sp a)
 2. (a sp b), (b sp c)  (a sp c)
 3. (a sp b), (x a y)  (x b y)

What RDF/RDFS Cannot Model
 cardinality constraints on properties
 a Person has exactly one biological father.
 a given property (such as ex:hasAncestor) is transitive
 two different properties are inverses of each other
 a given property is a unique identifier (or key) for instances of a particular
class.
 two different classes (having different URIrefs) actually represent the same
class.
 two different instances (having different URIrefs) actually represent the
same individual.
 constraints on the range or cardinality of a property that depend on the
class of resource to which a property is applied,
 for a soccer team the ex:hasPlayers property has 11 values, while for a basketball team
the same property should have only 5 values.
 describe new classes in terms of combinations (e.g., unions and
intersections) of other classes, or to say that two classes are disjoint (i.e.,
that no resource is an instance of both classes).

OWL: The Web Ontology Language
Classes and Individuals
A class can be described by
 a class identifier (a URI reference)
 an exhaustive enumeration of individuals that together
form the instances of a class
 a property restriction
 the intersection, union, complement of two or more class
descriptions
Properties
 Object properties link individuals to individuals, or classes
to classes, or classes to individuals
 Datatype properties link individuals to data values.
<rdf:Description rdf:about="#William_Jefferson_Clinton“/>An individual

Class Properties in OWL
OWL adds a number of modeling elements
oneOf
Existential and Universal Quantification
<owl:Class>
<owl:oneOf rdf:parseType="Collection">
<owl:Thing rdf:about="#NorthAmerica"/>
<owl:Thing rdf:about="#SouthAmerica"/>
</owl:oneOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="#hasParent" />
<owl:someValuesFrom rdf:resource="#Physician" />
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="#hasParent" />
<owl:allValuesFrom rdf:resource="#Musician" />
</owl:Restriction>

Classes as Logical Entities
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:Thing rdf:about="#Tosca" />
<owl:Thing rdf:about="#Salome" />
</owl:oneOf>
</owl:Class>
<owl:Class>
<owl:Thing rdf:about="#Turandot" />
<owl:Thing rdf:about="#Tosca" />
</owl:oneOf>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
Can also use:
<owl:unionOf rdf:parseType="Collection">

More Logical Definitions
Classes defined through
negation
Class Axioms
<owl:Class> <owl:complementOf> <owl:Class rdf:about="#Meat"/> </owl:complementOf> </owl:Class>
<owl:Class>
<owl:complementOf>
<owl:Class rdf:about="#Meat"/>
</owl:complementOf>
</owl:Class>
<owl:Class rdf:ID="Operetta">
<rdfs:subClassOf rdf:resource="#MusicalWork"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="#hasLibrettist" />
<owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Class>
<owl:complementOf rdf:resource="#Opera"/>
</owl:Class>
</rdfs:subClassOf>
</owl:Class>
• Necessary but not sufficient condition
• Owl:equivalentClassOf is used for
necessary and sufficient conditions

Memory-Based Storage
Jena in-memory
architecture

Main Memory BitMaps
BitMat
Uses the observation that the no. of predicates is small

Storage of RDF/OWL Data
Triple Store Approach
Storing an edge table, often with an additional ID field
 Can be structured as a B+ tree
 Literals compressed with a mapping dictionary
 Strings are assigned IDs, and IDs are used in the triple stores
 Often additional indices are stored for each permutation of the
three columns and column pairs
 SPO, SOP, OSP, OPS, PSO, POS
 SP, SO, PO, PS, OP, OS
Typical issue
 Too many self-joins for queries
 Indexes reduce the number of joins

Using Relational back-ends
Property Tables Approach
Minerva System

Property Tables Approach (contd.)
Minerva System
There are many hybrid approaches

OWL is a Semantic Graph
One can view OWL documents as a graph with
special node and edge semantics
How do we query this graph?

Rdf data-model-and-storage

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