RDM@Edinburgh_interoperation_IDCC2015

Service Integration to Enhance RDM:
RSpace electronic laboratory notebook (ELN) case
study
Stuart Macdonald (RDM Services Coordinator, University of
Edinburgh)
stuart.macdonald@ed.ac.uk
Rory Macneil (CEO, Research Space)
rmacneil@researchspace.com
10th International Digital Curation Conference, London, 10 February 2014

University of Edinburgh RDM Policy
 University of Edinburgh is one of the
first Universities in UK to adopt a
policy for managing research data:
http://www.ed.ac.uk/is/research-
data-policy
 The policy was approved by the
University Court on 16 May 2011.
 It’s acknowledged that this is an
aspirational policy and that
implementation will take some
years.

Policy implementation:
RDM Roadmap Colleagues in IS developed a roadmap to
deliver a suite of services that will meet:
• RDM policy objectives
• the needs of our researchers
Cross-divisional collaboration
 3 Phases (Aug. 2012 – May 2015)
Services already in place:
o Data management planning
o Active working file space = DataStore
o Data publication repository = DataShare
Services in development:
o Long term data archive = DataVault
o Data Asset Register (DAR)
RDM support: Awareness raising, training &
consultancy
http://edin.ac/1u3sKqy
Before research During research After research

Research Data Management Planning
Customised instance of DCC’s DMPonline toolkit for Univ. of Edinburgh use:
A range of funders and local (non-funder) DMP templates
Institutional guidance (storage, services, support)
Tailored DMP assistance for researchers submitting research proposals (F-2-F)
DataStore
NAS facility to store data that are actively used in current research activities
0.5 TB (500GB) allocated per researcher (incl. PGRs)
Up to 0.25TB can be used for “shared” group storage
Extra storage costs: £200 per TB per year incl. back-up and DR copies
Infrastructure in place. Allocation of space devolved to School IT departments
overseen by Heads of IT from each College.

DataShare
 Edinburgh DataShare is the University’s OA multi-disciplinary data repository hosted bt the
Data Library : http://datashare.is.ed.ac.uk
 Assists researchers who want to share their data, get credit for data publication, and
preserve their data for the long-term (DOI, licence, citation)
Data Vault
 Safe, private and secure long-term data archive
 Current focus on front-end application requirements (authorisation, retention & deletion,
file structure, file transfer, integration)
Data Asset Register (DAR)
 Using PURE as the catalogue of data assets produced by Edinburgh researchers for
discovery, access, and re-use as appropriate.
Interoperation
 Systems are more likely to be used if some or all of the components are integrated and
developed to minimise ‘duplication’ of effort

RDM Support
• RDM team work with Research Administrators , Academic Support Librarians and IT
staff in each of the 22 Schools.
• Queries can be sent to the IS Helpline who will direct them to appropriate RDM staff via
CMS.
• Introductory sessions on local RDM services and support for researchers and research
administration staff in Schools / Institutes
• RDM website: http://www.ed.ac.uk/is/data-management
• RDM blog: http://datablog.is.ed.ac.uk
• RDM wiki:
https://www.wiki.ed.ac.uk/display/RDM/Research+Data+Management+Wiki

Training: Tailored Courses
Formal and bespoke training in the form of workshops, seminars and drop in sessions to
help researchers with RDM issues.
 Creating a data management plan for your grant application
 Handling data using SPSS
 Managing your research data: why it is important and what should you do? NEW
 Publishing and sharing sensitive data (pilot) NEW

MANTRA - http://datalib.edina.ac.uk/mantra
 An internationally recognized free online RDM training course for researchers -
developed by the Data Library
 Software-specific data handling exercises
 CC License & embed units in VLE’s e.g. Moodle

Service Integration examples
• DataShare is a customised DSpace instance with OAI-PMH
compliant DCMI metadata fields for data discovery through Google and
other search engines
• Records are harvested by Thomson-Reuters Data Citation Index
• SWORD API utilised for batch deposit of large and/or many files from
computers (‘Push using http’)
• Internal batch ingest of many/large files to circumvent 2.1GB limit via
interface (‘Pull via command line interface’)
• checksums determine that delivered object mirrors deposited object
• DSpace GITHUB plugin* - allows software used in research to be
from GitHub (or similar) source code repository into DataShare, which
then be assigned a DOI to facilitate citation - using the SWORD deposit
protocol

DataSync – a secure dropbox-like facility for synchronising data on DataStore with
desktop and mobile machines:
• uses open source ‘ownCloud’ technology
Refresh of ECDF Computing Cluster (‘Eddie’) complete with ‘Data Centric
Computing’ business model – integrate Eddie storage & HPC, parallel and cloud
computing layers with DataStore for data sharing i.e. data transferred from DataStore
for analysis run on Eddie and then data ported back to DataStore (DataVault)
Linking of SDA toolkit with numeric ASCII data held in DataShare for the purposes of
analysis (re-use)
Facility to embargo variables within numeric files (in statistical analysis package
formats) for subsequent open deposit into DataShare of de-sensitised version
Research data deposit directly from RSpace Electronic Lab Notebook (ELN) interface
into DataShare and Datastore (& Data Vault) using SWORD protocol

Who and what is driving demand for ELNs?
● Researchers
– Utility and convenience of paper lab book + online capabilities
– On multiple devices
– File management/integration
● Groups/PIs
– Controlled sharing
– Collaboration
– Group management
● Institutions: data librarians, research admins, IT, commercialisation offices
– Enterprise features: Scalable deployment, Single Sign On
– IP protection: audit trail, signing
– Publishing
– Archiving
– Repository integration

RSpace
RSpace
First electronic notebook for research
institutions

Business Model
● Free public cloud for labs and individuals
● Institutional deployments @$100/user/year
● Seamless movement of groups and data between different RSpaces
Researchers Institutions Funders
Value
Edinburgh
Public
Cloud
Stanford
Lab
LabLab
Convenience
Productivity
Portability
Control
Compliance
Data mining
Data mining

RSpace at Edinburgh
– Linking to files in Edinburgh DataStore
– Depositing content in Edinburgh DataShare
– Archiving in Edinburgh DataVault

Linking to DataStore
“My plan for workflow would be generally to deposit
my data in DataStore either from the wet lab
instruments (gel photos, elisa data, etc, and also
possibly directly from an iPad) or from in silico data
analysis I’ve been doing, and then link to it from within
RSpace.”

Linking to DataStore
Experiment
Procedure
~~~~~~~~~~
~~~~~~~~~~
Results
~~~~~~~~~~
Results.xls
ELN UoE DataStore

Exporting to DataShare
RSpace
UoE DataShare

Archiving in Edinburgh DataVault
● DataVault functionality/API not yet specified
● Anticipate use of XML zip archive
● Many requirements to be determined
– e.g., searching, restoration

RSpace and Edinburgh RDM
RSpace
server
DataShareDataStore
DataVault User / Browser

Thanks!
Acknowledgements:
Sunny Yang, Richard Adams, Nigel Goddard
Robin Rice, Kevin Tomlinson, George Hamilton,
Orlando Richards

RDM@Edinburgh_interoperation_IDCC2015

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