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Phylogenetic Changes in Soil Bacterial
and Fungal Communities in Land under
CRP and during Conversion to Cropland
PI: Jennifer Moore-Kucera,
Co-PIs: Veronica Acosta-Martinez
John Zak, Juske Horita,
Franciso Calderon, David Weindorf
Ph.D. students: Mamatha Kakarla, Chenhui Li,
Former post-doc: Lisa Fultz
Depart of Plant & Soil Science
Depart of Biological Sciences
Dept of Geosciences
Award #:
2012-67019-30183
nual row crops
7 fields
Rangeland
3 fields
CRP
16 fields
Objective 1:
ective 1: Evaluate soil microbial and quality
nges with increasing time under CRP restoration
>50Early: 6-15 yrs restored
Late: 20-26 yrs restored
yrs
estored
26 fields sampled across 7 Texas High Plains Counties
Sampled in 2012 (5.7% H2O) and 2014 (14% H2O)
Target soil series: Amarillo fine sandy loam
Soil: Amarillo fine sandy loam
pH: 7.6 (0-30cm)
Soil Restoration following Disturbance
Ecosystem
Disturbance
Original
Ecosystem
Long-term
ow crops
Early
CRP
Late
CRP
Rangeland
reased restoration time increased nutrient
ling potential and decreased metabolic stress
Metabolic quotientzymatic activity
MBC/CO2
with positive correlation:
Time Under Restoration Not Significant Driver of
Soil Bacterial Composition
Cropped fields:
Proteobacteria,
Firmicutes, Bacteroidetes,
Nitrospirae, and
CRP & Rangeland:
Rubrobacteria,
Acidobacteria,
Verrucomicrobia,
Chlorobi, Fibrobacters
and Planctomycetes
Verrucomicrobia and Planctomycetes:
Key taxa involved in soil organic matter?
anctomycetes, Verrucomicrobia, and Rubrobacteria
y = 4.1x - 0.57
R = 0.744**
0
5
10
15
20
25
30
35
0.0 2.0 4.0 6.0 8.0
Soilorganicmatter(gkgsoil)
Verrucomicrobia (%)
Microbial Network Analysis:
Rare Microbiome Differentiate Management
Common OTUs bring nodes
or samples together  No
Distinct OTUs repel nodes
Long-term
croplands
Early CRP
(6-14y)
Late CRP
(21-26y)
Abundant Microbiome
(counts are 1700 or more):
Rare Microbiome
(counts are 5-10)
Soil Fungal Community More Sensitive to
Restoration Time Than Soil Bacterial Community
j 1 Conclusions
urrent conservation contracts may not be long
nough to realize optimal ecosystem functions
oil bacterial communities were not affected by
estoration time but were distinct from croplands.
Rare” bacterial biome may provide more insight
oil fungi were more sensitive to time under
estoration than bacteria
acterial taxa were identified that may play key
Objective 2: What happens to the soil
ecosystem when CRP land is converted?
Ecological Benefits:
Reduced soil erosion
Improved water, air,
soil quality
?
Converted CRPCRP
aluate short-term changes in soil quality and
crobial dynamics after CRP conversion
Main plot: System (CRP vs. Converted)
Split: 3 depths (0-10, 10-30, 30-50cm)
Block: 3 counties
Sampling: Fall 2012, 2013, 2014
23-25 yrs enrolled 22-25 yrs enrolled
(converted 2010 or 2012)
Soil texture: Fine sandy loam
pH: 7.6 (0-30cm)
SOM: 1.4%
plit-plot
RCB:
10-30cm: Converted fields had greater bacterial
cies richness and diversity measures in
P and converted CRP fields
Phylogenetic diversity indexSpecies Richness
Phylogeneticdiversityindex
p<0.0001p<0.0001
Converted
CRP
CRP Converted
CRP
CRP
10-30cm
10-30cm
10-30cm
10-30cm
nverted CRP fields associated with a
istribution of SOM
Initial SOM
incorporation provides
flux of resources to
bacteria  promotes
bacterial diversity
Converted
CRP
CRP
10-30cm
10-30cm
Soil organic C
nversion of CRP back to crop systems altered
terial communities in both depths
p<0.001
0-10cm
0-10cm
10-30cm
10-30cm
Converted
CRP
CRP
Bacterial communities
nversion of CRP back to crop systems altered
terial communities in both depths
0-10cm
0-10cm
10-30cm
10-30cm
Converted
CRP
CRP
CRP Greater:
Verrucomicrobia
(18%)
Cyanobacteria
(58-80%)
Rubrobacteria
(40%)
Acidobacteria
Converted Greater:
γ-proteobacteria
(49-62%)
β-proteobacteria
(74-97%)
Gemmatimonadetes
(104-138%)
Firmicutes
(20-36%)
reduction in Verrucomicrobia or Planctomycetes
ay be early indications of SOM decline?
Planctomycetes, and Verrucomicrobia were positively
y = 4.1x - 0.57
R = 0.744**
0
5
10
15
20
25
30
35
0.0 2.0 4.0 6.0 8.0
Soilorganicmatter(gkgsoil)
Verrucomicrobia (%)
j 2 Conclusions
onversion of CRP to cropland resulted in
ncreased SOM into lower soil depths and
ncreased bacterial diversity but this is
ypothesized to be a short-term effect
Within 1-5 yrs of conversion, bacterial
ommunities resembled long-term cropped fields
Low resiliency
onverted CRP were associated with reductions in
cologically significant taxa involved in OM
Thank You!

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Soil Microbial Communities: Key Indicators of Soil Carbon Transformations When Conservation Reserve Program Land is Converted to Cropland

  • 1. Phylogenetic Changes in Soil Bacterial and Fungal Communities in Land under CRP and during Conversion to Cropland PI: Jennifer Moore-Kucera, Co-PIs: Veronica Acosta-Martinez John Zak, Juske Horita, Franciso Calderon, David Weindorf Ph.D. students: Mamatha Kakarla, Chenhui Li, Former post-doc: Lisa Fultz Depart of Plant & Soil Science Depart of Biological Sciences Dept of Geosciences Award #: 2012-67019-30183
  • 2. nual row crops 7 fields Rangeland 3 fields CRP 16 fields Objective 1: ective 1: Evaluate soil microbial and quality nges with increasing time under CRP restoration >50Early: 6-15 yrs restored Late: 20-26 yrs restored yrs estored 26 fields sampled across 7 Texas High Plains Counties Sampled in 2012 (5.7% H2O) and 2014 (14% H2O) Target soil series: Amarillo fine sandy loam Soil: Amarillo fine sandy loam pH: 7.6 (0-30cm)
  • 3. Soil Restoration following Disturbance Ecosystem Disturbance Original Ecosystem Long-term ow crops Early CRP Late CRP Rangeland
  • 4. reased restoration time increased nutrient ling potential and decreased metabolic stress Metabolic quotientzymatic activity MBC/CO2 with positive correlation:
  • 5. Time Under Restoration Not Significant Driver of Soil Bacterial Composition Cropped fields: Proteobacteria, Firmicutes, Bacteroidetes, Nitrospirae, and CRP & Rangeland: Rubrobacteria, Acidobacteria, Verrucomicrobia, Chlorobi, Fibrobacters and Planctomycetes
  • 6. Verrucomicrobia and Planctomycetes: Key taxa involved in soil organic matter? anctomycetes, Verrucomicrobia, and Rubrobacteria y = 4.1x - 0.57 R = 0.744** 0 5 10 15 20 25 30 35 0.0 2.0 4.0 6.0 8.0 Soilorganicmatter(gkgsoil) Verrucomicrobia (%)
  • 7. Microbial Network Analysis: Rare Microbiome Differentiate Management Common OTUs bring nodes or samples together  No Distinct OTUs repel nodes Long-term croplands Early CRP (6-14y) Late CRP (21-26y) Abundant Microbiome (counts are 1700 or more): Rare Microbiome (counts are 5-10)
  • 8. Soil Fungal Community More Sensitive to Restoration Time Than Soil Bacterial Community
  • 9. j 1 Conclusions urrent conservation contracts may not be long nough to realize optimal ecosystem functions oil bacterial communities were not affected by estoration time but were distinct from croplands. Rare” bacterial biome may provide more insight oil fungi were more sensitive to time under estoration than bacteria acterial taxa were identified that may play key
  • 10. Objective 2: What happens to the soil ecosystem when CRP land is converted? Ecological Benefits: Reduced soil erosion Improved water, air, soil quality ?
  • 11. Converted CRPCRP aluate short-term changes in soil quality and crobial dynamics after CRP conversion Main plot: System (CRP vs. Converted) Split: 3 depths (0-10, 10-30, 30-50cm) Block: 3 counties Sampling: Fall 2012, 2013, 2014 23-25 yrs enrolled 22-25 yrs enrolled (converted 2010 or 2012) Soil texture: Fine sandy loam pH: 7.6 (0-30cm) SOM: 1.4% plit-plot RCB:
  • 12. 10-30cm: Converted fields had greater bacterial cies richness and diversity measures in P and converted CRP fields Phylogenetic diversity indexSpecies Richness Phylogeneticdiversityindex p<0.0001p<0.0001 Converted CRP CRP Converted CRP CRP 10-30cm 10-30cm 10-30cm 10-30cm
  • 13. nverted CRP fields associated with a istribution of SOM Initial SOM incorporation provides flux of resources to bacteria  promotes bacterial diversity Converted CRP CRP 10-30cm 10-30cm Soil organic C
  • 14. nversion of CRP back to crop systems altered terial communities in both depths p<0.001 0-10cm 0-10cm 10-30cm 10-30cm Converted CRP CRP Bacterial communities
  • 15. nversion of CRP back to crop systems altered terial communities in both depths 0-10cm 0-10cm 10-30cm 10-30cm Converted CRP CRP CRP Greater: Verrucomicrobia (18%) Cyanobacteria (58-80%) Rubrobacteria (40%) Acidobacteria Converted Greater: γ-proteobacteria (49-62%) β-proteobacteria (74-97%) Gemmatimonadetes (104-138%) Firmicutes (20-36%)
  • 16. reduction in Verrucomicrobia or Planctomycetes ay be early indications of SOM decline? Planctomycetes, and Verrucomicrobia were positively y = 4.1x - 0.57 R = 0.744** 0 5 10 15 20 25 30 35 0.0 2.0 4.0 6.0 8.0 Soilorganicmatter(gkgsoil) Verrucomicrobia (%)
  • 17. j 2 Conclusions onversion of CRP to cropland resulted in ncreased SOM into lower soil depths and ncreased bacterial diversity but this is ypothesized to be a short-term effect Within 1-5 yrs of conversion, bacterial ommunities resembled long-term cropped fields Low resiliency onverted CRP were associated with reductions in cologically significant taxa involved in OM