This document provides guidelines for integrating control systems into rail reprofiling trains divided into wagon units, equipment, and modules. The guidelines aim to ensure process reliability, train availability, maintainability of systems, and user safety in energies and automation domains. The guidelines cover energies-safety, system security, system modeling, train interfaces, and user interfaces. They are applicable for new trains and reference relevant ISO and EN standards related to machinery safety, control system validation, emergency stops, guarding, and information security.