This document discusses challenges in modeling hydrogen (H2) in energy system models. It outlines a project assessing the potential role of H2 in the Portuguese energy system using the TIMES_PT model. The project will: (1) analyze current and emerging H2 technologies; (2) update H2 technologies in TIMES_PT; (3) simulate H2 deployment scenarios; and (4) develop a roadmap for H2 in Portugal till 2050. The document notes that the older TIMES_PT model includes over 90 H2 technologies but that these need updating based on more recent studies. It emphasizes taking a holistic view of H2 that considers its role in providing flexibility across multiple energy markets.