![Data Retrieval and deposition
schemes
•NCBI-eutilities
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed
&term=cancer&reldate=60&datetype=edat&retmax=100&usehistory=
y
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleoti
de&term=biomol+trna[prop]
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=protein
&term=70000:90000[molecular+weight]
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=struc
ture&id=19923,12120
Ref:
http://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch](https://image.slidesharecdn.com/databasesii-121116031621-phpapp02/85/Databases-Part-II-16-320.jpg)
Databases Part II
- 2. Mid term: ◦ 20 marks 14 marks 8 for evaluations 6 for test 6 marks Meets the character specification (+1) Answers the Question (+1) Originality (+1) Clarity/perspective (+1) Copy from someone/internet (-1)
- 3. Encyclopedia of life (www.eol.org ) Education + EOL (http://education.eol.org ) http://indiabiodiversity.org
- 4. The Encyclopedia of Life is a collaborative effort among scientist and the general public to bring information together about all 1.9 million named and known species, in a common format, freely available on the internet.
- 8. 17 countries out of XXX contains 70% biodiversity: “Megadiverse”
- 11. The Bar Code of Life (BOLD Systems) International Barcode of Life Projects Data Portal; Barcode Cluster; Data Collection V3 is released: V2 will be maintained till 2012 Dec.
- 12. Animal Identification ◦ COI (cytochrome C oxidase subunit 1) Fungi Identification ◦ (ITS – internal transcribed spacer) Plant Identification ◦ Rbcl (ribulose bisphosphate carboxylase) ◦ Mat k (maturase k)
- 15. •Genbank •Entrez •CoreNucleotide •DbEST •dbGSS •NCBI-eutilities
- 16. Data Retrieval and deposition schemes •NCBI-eutilities http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed &term=cancer&reldate=60&datetype=edat&retmax=100&usehistory= y http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleoti de&term=biomol+trna[prop] http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=protein &term=70000:90000[molecular+weight] http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=struc ture&id=19923,12120 Ref: http://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch
- 17. Data Retrieval and deposition schemes BankIt : Single or a simple group of sequences: web based Sequin : Simple to complex submission ; < 10,000 sequences Tbl2Asn : Template File; Sequence file; Feature Table