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Vignesh Subramanian

The document lists genes that are upregulated, with a fold change of 2.0 or greater, in an experiment comparing test to control samples. Several genes are listed, including SFRS11, EIF4E, BMI1, S100A8, S100A9, P2RX4, HNMT, IL15, HMGB1, and CD44. The genes are involved in various processes like autoimmune response, neurotransmission, neoplastic stem cells, and different types of cancer.

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Autoimmune Related Genes 200033_at 2.2821743 DDX5 1655 202917_s_at 2.3067315 S100A8 6279 203535_at 2.0655162 S100A9 6280 210354_at -2.5150347 IFNG 3458 211971_s_at 2.1539035 LRPPRC 10128 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212740_at 2.3148327 PIK3R4 30849 216183_at -2.1992989 TGM2 7052 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 218286_s_at 2.660166 RNF7 9616 224321_at -7.039534 TMEFF2 23671 224731_at 3.1694982 HMGB1 3146 229937_x_at 2.2331238 LILRB1 10859 236203_at 2.9139893 HLA-DQA1 3117 236539_at 4.11302 PTPN22 26191 1565868_at -2.218658 CD44 960 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
Neurotransmitter 202221_s_at 3.1532524 EP300 2033 202917_s_at 2.3067315 S100A8 6279 203535_at 2.0655162 S100A9 6280 204088_at 4.014536 P2RX4 5025 204112_s_at 3.7687378 HNMT 3176 210354_at -2.5150347 IFNG 3458 212224_at 2.4291317 ALDH1A1 216 213906_at 3.4120972 MYBL1 4603 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 217848_s_at 2.1445165 PPA1 5464 224321_at -7.039534 TMEFF2 23671 224731_at 3.1694982 HMGB1 3146 225885_at 11.29698 EEA1 8411 229515_at -2.1758888 PAWR 5074 229696_at -2.7418253 FECH 2235 237289_at 2.2961657 CREB1 1385 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
Neoplastic Stem Cell 200685_at 7.447116 SFRS11 9295 200686_s_at 3.7865622 SFRS11 9295 201436_at 3.7113135 EIF4E 1977 202265_at 2.8984547 BMI1 648 203971_at 2.2034347 SLC31A1 1317 208700_s_at 2.137866 TKT 7086 209388_at 2.1912978 PAPOLA 10914 210354_at -2.5150347 IFNG 3458 211971_s_at 2.1539035 LRPPRC 10128 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212740_at 2.3148327 PIK3R4 30849 214511_x_at 2.2352204 FCGR1B 2210 FCGR1A /// FCGR1C 100132417 /// 217371_s_at 2.3721685 IL15 3600 222035_s_at 2.5385866 PAPOLA 10914 224321_at -7.039534 TMEFF2 23671 1565868_at -2.218658 CD44 960 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene 216950_s_at 2.078583 216950_s_at 2.078583 2209
Brain Cancer 200015_s_at 2.147912 SEPT2 4735 201021_s_at 2.1561081 DSTN 11034 201436_at 3.7113135 EIF4E 1977 202221_s_at 3.1532524 EP300 2033 202265_at 2.8984547 BMI1 648 202917_s_at 2.3067315 S100A8 6279 203535_at 2.0655162 S100A9 6280 204088_at 4.014536 P2RX4 5025 204112_s_at 3.7687378 HNMT 3176 205611_at 5.6468973 TNFSF12 8742 208754_s_at 2.195824 NAP1L1 4673 209430_at 2.8247743 BTAF1 9044 210211_s_at 2.8531528 HSP90AA1 3320 210354_at -2.5150347 IFNG 3458 211075_s_at 2.094655 CD47 961 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212224_at 2.4291317 ALDH1A1 216 212672_at 2.725499 ATM 472 213581_at 2.1808512 PDCD2 5134 213857_s_at 2.057008 CD47 961 213906_at 3.4120972 MYBL1 4603 214328_s_at 2.3417025 HSP90AA1 3320 214709_s_at 3.2072523 KTN1 3895 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
216183_at -2.1992989 TGM2 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 217848_s_at 2.1445165 PPA1 5464 219534_x_at 2.1521416 CDKN1C 1028 35201_at -2.2332401 HNRNPL 3191 224321_at -7.039534 TMEFF2 23671 224731_at 3.1694982 HMGB1 3146 224899_s_at 2.956156 MAGT1 84061 225885_at 11.29698 EEA1 8411 226335_at 3.055146 RPS6KA3 6197 227629_at -2.6420622 PRLR 5618 229515_at -2.1758888 PAWR 5074 229696_at -2.7418253 FECH 2235 237289_at 2.2961657 CREB1 1385 1565868_at -2.218658 CD44 960
Liver Cancer 200631_s_at 2.2673428 SET 6418 200685_at 7.447116 SFRS11 9295 200686_s_at 3.7865622 SFRS11 9295 201021_s_at 2.1561081 DSTN 11034 201059_at -2.2916496 CTTN 2017 201210_at 2.7075298 DDX3X 1654 201436_at 3.7113135 EIF4E 1977 201458_s_at 2.0512536 BUB3 9184 201470_at 2.1695194 GSTO1 9446 201652_at 2.3299637 COPS5 10987 202221_s_at 3.1532524 EP300 2033 202265_at 2.8984547 BMI1 648 202437_s_at 4.2736635 CYP1B1 1545 202614_at 2.6856213 SLC30A9 10463 202763_at 22.85227 CASP3 836 203535_at 2.0655162 S100A9 6280 204088_at 4.014536 P2RX4 5025 205170_at -2.4707286 STAT2 6773 205552_s_at 3.0171177 OAS1 4938 206158_s_at 2.4304378 CNBP 7555 208319_s_at 2.532502 RBM3 5935 208726_s_at 2.0053256 EIF2S2 8894 208796_s_at 2.481621 CCNG1 900 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
21 209388_at 2.1912978 PAPOLA 10914 209503_s_at 2.2016048 PSMC5 5705 209902_at 3.8992784 ATR 545 210211_s_at 2.8531528 HSP90AA1 3320 210354_at -2.5150347 IFNG 3458 210969_at -2.9719222 PKN2 5586 211070_x_at 2.0338123 DBI 1622 211075_s_at 2.094655 CD47 961 211971_s_at 2.1539035 LRPPRC 10128 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212468_at -4.21961 SPAG9 9043 212672_at 2.725499 ATM 472 212984_at 6.865912 ATF2 1386 213857_s_at 2.057008 CD47 961 214328_s_at 2.3417025 HSP90AA1 3320 216183_at -2.1992989 TGM2 7052 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 217848_s_at 2.1445165 PPA1 5464 217957_at 2.0236645 C16orf80 29105 218098_at 3.0974994 ARFGEF2 10564 219439_at 2.600284 C1GALT1 56913 219534_x_at 2.1521416 CDKN1C 1028 222035_s_at 2.5385866 PAPOLA 10914 222317_at 5.2990704 PDE3B 5140 40189_at 2.5402513 SET 6418
222848_at 3.2602556 CENPK 64105 224321_at -7.039534 TMEFF2 23671 224579_at 2.1896427 SLC38A1 81539 224899_s_at 2.956156 MAGT1 84061 225892_at 4.5099487 IREB2 3658 237289_at 2.2961657 CREB1 1385 CARD16 /// CASP1 834 114769 /// 1557915_s_at 2.330413 GSTO1 9446 1565868_at -2.218658 CD44 960 1552703_s_at 2.0806806
Annex Upregulated genes # Notes : UP - Fold change([Test] vs [Control]) #Only up-regulated entities from parent entity list : #Fold change >= 2.0 #Entity List : T Test unpaired p-value P <= 0.05 #Interpretation : New Parameter #Experiment : MAS5_without3 #Fold-Change cut-off : 2.0 #Pairing option : All against single condition #Condition pairs : #[Test] vs [Control] #Minimum number of pairs:1 out of 1 condition pairs. # Technology : Affymetrix.GeneChip.HG-U133_Plus_2 # Owner : gxuser # Created On : Thu Dec 15 21:01:04 PST 2011 200015_s_at 2.147912 1.1029348 2.147912 up SEPT2 4735 200033_at 2.2821743 1.1904091 2.2821743 up DDX5 1655 200056_s_at 3.750907 1.9072394 3.750907 up C1D 10438 200631_s_at 2.2673428 1.1810025 2.2673428 up SET 6418 200662_s_at 2.5668206 1.3599825 2.5668206 up TOMM20 9804 200685_at 7.447116 2.8966818 7.447116 up SFRS11 9295 200686_s_at 3.7865622 1.9208887 3.7865622 up SFRS11 9295 Probe set ID Fold change([T est] vs [Control]) Log fold change([ Test] vs [control]) Absolute fold change([ Test] vs [control]) Regulat ion ([Test] vs [Contro l]) Gene symbol Entrez Gene
200761_s_at 2.6137571 1.3861251 2.6137571 up ARL6IP5 10550 200877_at 2.1688275 1.1169153 2.1688275 up CCT4 10575 200893_at 2.1520174 1.1056896 2.1520174 up TRA2B 6434 200973_s_at 2.2201118 1.1506324 2.2201118 up TSPAN3 10099 201012_at 3.2795737 1.7135082 3.2795737 up ANXA1 301 201016_at 3.2915227 1.7187551 3.2915227 up EIF1AX 1964 201021_s_at 2.1561081 1.1084296 2.1561081 up DSTN 11034 201084_s_at 2.9962494 1.5831578 2.9962494 up BCLAF1 9774 201153_s_at 4.4735823 2.1614306 4.4735823 up MBNL1 4154 201177_s_at 3.0397127 1.603935 3.0397127 up UBA2 10054 201197_at 2.6190262 1.3890305 2.6190262 up AMD1 262 201200_at 2.040988 1.0292677 2.040988 up CREG1 8804 201210_at 2.7075298 1.4369773 2.7075298 up DDX3X 1654 201273_s_at 4.4369597 2.1495714 4.4369597 up SRP9 6726 201304_at 4.268587 2.0937586 4.268587 up NDUFA5 4698 201312_s_at 2.6486118 1.4052364 2.6486118 up SH3BGRL 6451 201344_at 2.1205077 1.0844097 2.1205077 up UBE2D2 7322 201436_at 3.7113135 1.8919299 3.7113135 up EIF4E 1977 201449_at 2.3981822 1.2619413 2.3981822 up TIA1 7072 201458_s_at 2.0512536 1.0365058 2.0512536 up BUB3 9184 201470_at 2.1695194 1.1173755 2.1695194 up GSTO1 9446 201534_s_at 4.990514 2.3191884 4.990514 up UBL3 5412 201619_at 4.69614 2.2314754 4.69614 up PRDX3 10935 201637_s_at 2.5457363 1.348083 2.5457363 up FXR1 8087 201652_at 2.3299637 1.2203075 2.3299637 up COPS5 10987 201687_s_at 3.1252825 1.6439866 3.1252825 up API5 8539 201701_s_at 3.2309306 1.6919497 3.2309306 up PGRMC2 10424 201807_at 2.2103863 1.1442986 2.2103863 up VPS26A 9559
201816_s_at 3.526379 1.8181876 3.526379 up GBAS 2631 201849_at 2.8053339 1.4881725 2.8053339 up BNIP3 664 201880_at 2.0790484 1.0559233 2.0790484 up ARIH1 25820 201955_at 4.2731457 2.0952985 4.2731457 up CCNC 892 201990_s_at 2.5158024 1.3310186 2.5158024 up CREBL2 1389 202088_at 3.1139526 1.638747 3.1139526 up SLC39A6 25800 202113_s_at 2.4796548 1.3101393 2.4796548 up SNX2 6643 202126_at 4.1493287 2.052878 4.1493287 up PRPF4B 8899 202163_s_at 3.68092 1.8800664 3.68092 up CNOT8 9337 202221_s_at 3.1532524 1.6568407 3.1532524 up EP300 2033 202258_s_at 2.0979457 1.0689774 2.0979457 up N4BP2L2 10443 202265_at 2.8984547 1.5352839 2.8984547 up BMI1 648 202437_s_at 4.2736635 2.0954733 4.2736635 up CYP1B1 1545 202484_s_at 2.3324444 1.2218428 2.3324444 up MBD2 8932 202614_at 2.6856213 1.4252559 2.6856213 up SLC30A9 10463 202653_s_at 3.663287 1.8731387 3.663287 up MARCH7 64844 202675_at 2.3853893 1.2542248 2.3853893 up SDHB 6390 202763_at 22.85227 4.5142655 22.85227 up CASP3 836 202780_at 3.0060108 1.5878502 3.0060108 up OXCT1 5019 202797_at 4.3861456 2.1329536 4.3861456 up SACM1L 22908 202850_at 2.6885805 1.4268447 2.6885805 up ABCD3 5825 202882_x_at 2.0234632 1.0168266 2.0234632 up NOL7 51406 202917_s_at 2.3067315 1.20585 2.3067315 up S100A8 6279 202930_s_at 3.4169254 1.7726988 3.4169254 up SUCLA2 8803 203024_s_at 3.0551512 1.6112438 3.0551512 up C5orf15 56951 203303_at 2.365663 1.2422446 2.365663 up DYNLT3 6990 203341_at 2.3556535 1.2361274 2.3556535 up CEBPZ 10153 203386_at 2.0921066 1.0649563 2.0921066 up TBC1D4 9882
203493_s_at 4.4541926 2.155164 4.4541926 up CEP57 9702 203535_at 2.0655162 1.0465025 2.0655162 up S100A9 6280 203543_s_at 7.5556283 2.9175518 7.5556283 up KLF9 687 203593_at 5.251859 2.3928282 5.251859 up CD2AP 23607 203646_at 2.4614396 1.2995024 2.4614396 up FDX1 2230 203651_at 5.5294204 2.4671283 5.5294204 up ZFYVE16 9765 203791_at 7.415294 2.890504 7.415294 up DMXL1 1657 203799_at 4.088819 2.0316842 4.088819 up CD302 9936 203804_s_at 3.077349 1.621688 3.077349 up CROP 51747 203971_at 2.2034347 1.1397542 2.2034347 up SLC31A1 1317 203991_s_at 3.143972 1.6525884 3.143972 up KDM6A 7403 204062_s_at 4.133921 2.0475109 4.133921 up ULK2 9706 204088_at 4.014536 2.0052333 4.014536 up P2RX4 5025 204112_s_at 3.7687378 1.9140815 3.7687378 up HNMT 3176 204202_at 3.8926911 1.9607679 3.8926911 up IQCE 23288 204215_at 2.8033874 1.4871712 2.8033874 up C7orf23 79161 204243_at 2.1997342 1.1373292 2.1997342 up RLF 6018 204244_s_at 3.6029305 1.8491708 3.6029305 up DBF4 10926 204249_s_at 2.5389519 1.344233 2.5389519 up LMO2 4005 204342_at 7.0244246 2.81238 7.0244246 up SLC25A24 29957 204417_at 2.0459807 1.0327924 2.0459807 up GALC 2581 204523_at 2.0451038 1.032174 2.0451038 up ZNF140 7699 204747_at 2.2767854 1.1869982 2.2767854 up IFIT3 3437 205237_at 3.3777223 1.7560507 3.3777223 up FCN1 2219 205250_s_at 4.0188513 2.0067832 4.0188513 up CEP290 80184 205288_at 4.1936016 2.0681899 4.1936016 up CDC14A 8556 205292_s_at 2.0129104 1.009283 2.0129104 up HNRNPA2B1 3181
205483_s_at 3.0571854 1.6122041 3.0571854 up ISG15 9636 205552_s_at 3.0171177 1.593171 3.0171177 up OAS1 4938 205611_at 5.6468973 2.4974585 5.6468973 up TNFSF12 8742 205715_at 3.0607252 1.6138735 3.0607252 up BST1 683 205716_at 3.306919 1.7254877 3.306919 up SLC25A40 55972 205930_at 2.3408363 1.2270241 2.3408363 up GTF2E1 2960 206095_s_at 3.4576106 1.7897754 3.4576106 up FUSIP1 10772 206157_at 2.4673855 1.3029832 2.4673855 up PTX3 5806 206158_s_at 2.4304378 1.2812161 2.4304378 up CNBP 7555 206308_at 2.8402193 1.5060023 2.8402193 up TRDMT1 1787 206914_at 2.1639452 1.113664 2.1639452 up CRTAM 56253 207483_s_at 2.010252 1.0073763 2.010252 up CAND1 55832 207941_s_at 2.71171 1.4392029 2.71171 up RBM39 9584 208290_s_at 2.230873 1.1576084 2.230873 up EIF5 1983 208319_s_at 2.532502 1.3405634 2.532502 up RBM3 5935 208374_s_at 2.8602982 1.5161655 2.8602982 up CAPZA1 829 208450_at 4.928022 2.3010087 4.928022 up LGALS2 3957 208700_s_at 2.137866 1.0961715 2.137866 up TKT 7086 208726_s_at 2.0053256 1.0038365 2.0053256 up EIF2S2 8894 208754_s_at 2.195824 1.1347624 2.195824 up NAP1L1 4673 208796_s_at 2.481621 1.3112828 2.481621 up CCNG1 900 208905_at 2.9724054 1.571631 2.9724054 up CYCS 54205 209067_s_at 2.633611 1.3970423 2.633611 up HNRPDL 9987 209096_at 2.2763379 1.1867148 2.2763379 up UBE2V2 7336 209115_at 2.961007 1.566088 2.961007 up UBA3 9039 209160_at 2.1788218 1.1235482 2.1788218 up AKR1C3 8644 209267_s_at 2.150532 1.1046935 2.150532 up SLC39A8 64116
209388_at 2.1912978 1.1317855 2.1912978 up PAPOLA 10914 209430_at 2.8247743 1.4981356 2.8247743 up BTAF1 9044 209431_s_at 2.1468358 1.1022118 2.1468358 up PATZ1 23598 209471_s_at 2.3973742 1.261455 2.3973742 up FNTA 2339 209503_s_at 2.2016048 1.1385555 2.2016048 up PSMC5 5705 209512_at 2.3055797 1.2051295 2.3055797 up HSDL2 84263 209571_at 2.1160083 1.0813452 2.1160083 up CIR 9541 209572_s_at 2.4391441 1.286375 2.4391441 up EED 8726 209628_at 3.614165 1.8536624 3.614165 up NXT2 55916 209666_s_at 2.4544377 1.2953926 2.4544377 up CHUK 1147 209688_s_at 2.4821196 1.3115726 2.4821196 up CCDC93 54520 209884_s_at 5.1350813 2.360387 5.1350813 up SLC4A7 9497 209902_at 3.8992784 1.9632071 3.8992784 up ATR 545 210042_s_at 2.165282 1.1145549 2.165282 up CTSZ 1522 210211_s_at 2.8531528 1.512557 2.8531528 up HSP90AA1 3320 210396_s_at 2.3155913 1.2113806 2.3155913 up BOLA2 /// LOC440354 /// LOC595101 440354 /// 552900 /// 595101 210691_s_at 2.3955357 1.2603483 2.3955357 up CACYBP 27101 210829_s_at 2.36575 1.2422976 2.36575 up SSBP2 23635 211070_x_at 2.0338123 1.0241866 2.0338123 up DBI 1622 211075_s_at 2.094655 1.0667127 2.094655 up CD47 961 211185_s_at 2.7502453 1.4595603 2.7502453 up SF3B1 23451 211675_s_at 5.137233 2.3609915 5.137233 up MDFIC 29969 211760_s_at 6.4439874 2.6879537 6.4439874 up VAMP4 8674 211971_s_at 2.1539035 1.1069536 2.1539035 up LRPPRC 10128 211979_at 3.6956975 1.8858467 3.6956975 up GPR107 57720 212063_at 2.0419557 1.0299516 2.0419557 up CD44 960
212150_at 4.317629 2.1102393 4.317629 up EFR3A 23167 212195_at 3.5542688 1.8295528 3.5542688 up IL6ST 3572 212217_at 3.2812676 1.7142533 3.2812676 up PREPL 9581 212224_at 2.4291317 1.2804407 2.4291317 up ALDH1A1 216 212245_at 2.0481803 1.0343428 2.0481803 up MCFD2 90411 212287_at 2.4092886 1.2686073 2.4092886 up SUZ12 23512 212297_at 2.1268086 1.0886903 2.1268086 up ATP13A3 79572 212410_at 2.598118 1.377467 2.598118 up EFHA1 221154 212454_x_at 2.4841983 1.3127804 2.4841983 up HNRPDL 9987 212460_at 2.1919737 1.1322304 2.1919737 up C14orf147 171546 212476_at 3.6527452 1.8689811 3.6527452 up ACAP2 23527 212508_at 2.0212047 1.0152155 2.0212047 up MOAP1 64112 212536_at 2.2477503 1.1684818 2.2477503 up ATP11B 23200 212544_at 2.1358657 1.0948209 2.1358657 up ZNHIT3 9326 212635_at 2.1601179 1.1111101 2.1601179 up TNPO1 3842 212672_at 2.725499 1.4465203 2.725499 up ATM 472 212709_at 2.0369844 1.026435 2.0369844 up NUP160 23279 212740_at 2.3148327 1.2109079 2.3148327 up PIK3R4 30849 212749_s_at 2.9869447 1.5786705 2.9869447 up RCHY1 25898 212781_at 2.5359802 1.3425435 2.5359802 up RBBP6 5930 212795_at 5.8693676 2.553205 5.8693676 up KIAA1033 23325 212847_at 3.0716612 1.6190192 3.0716612 up FUBP1 8880 212855_at 19.34377 4.273797 19.34377 up DCUN1D4 23142 212896_at 2.2307198 1.1575093 2.2307198 up SKIV2L2 23517 212984_at 6.865912 2.7794514 6.865912 up ATF2 1386 212989_at 5.181534 2.3733792 5.181534 up SGMS1 259230 213106_at 3.9553473 1.9838043 3.9553473 up ATP8A1 10396
100132417 /// 2209 213128_s_at 3.2219114 1.6879169 3.2219114 up UBE3A 7337 213212_x_at 3.7522979 1.9077743 3.7522979 up FLJ40113 /// LOC440295 374650 /// 440295 213246_at 2.3825607 1.252513 2.3825607 up C14orf109 26175 213251_at 3.7802198 1.9184701 3.7802198 up SMARCA5 8467 213581_at 2.1808512 1.1248913 2.1808512 up PDCD2 5134 213625_at 2.0797062 1.0563798 2.0797062 up ZKSCAN4 387032 213682_at 2.8561995 1.5140967 2.8561995 up NUP50 10762 213737_x_at 4.5911193 2.1988459 4.5911193 up GOLGA9P 283796 213786_at 3.4849036 1.8011187 3.4849036 up TAX1BP1 8887 213857_s_at 2.057008 1.0405475 2.057008 up CD47 961 213878_at 3.1062305 1.6351649 3.1062305 up PYROXD1 79912 213906_at 3.4120972 1.7706587 3.4120972 up MYBL1 4603 214141_x_at 2.4920976 1.3173605 2.4920976 up SFRS7 6432 214328_s_at 2.3417025 1.2275578 2.3417025 up HSP90AA1 3320 214363_s_at 2.9479141 1.5596945 2.9479141 up MATR3 9782 214511_x_at 2.2352204 1.1604171 2.2352204 up FCGR1B 2210 214709_s_at 3.2072523 1.6813378 3.2072523 up KTN1 3895 214790_at 2.6425781 1.4019462 2.6425781 up SENP6 26054 214960_at 2.1291225 1.090259 2.1291225 up API5 8539 215273_s_at 2.3192303 1.213646 2.3192303 up TADA3L 10474 215930_s_at 2.1854143 1.1279068 2.1854143 up CTAGE5 4253 216008_s_at 10.691497 3.418392 10.691497 up ARIH2 10425 216218_s_at 2.2233353 1.1527255 2.2233353 up PLCL2 23228 216321_s_at 3.5545704 1.8296752 3.5545704 up NR3C1 2908 216713_at 2.642402 1.40185 2.642402 up KRIT1 889 216950_s_at 2.078583 1.0556003 2.078583 up FCGR1A /// FCGR1C
217356_s_at 3.0944552 1.6296854 3.0944552 up PGK1 5230 217371_s_at 2.3721685 1.2462065 2.3721685 up IL15 3600 217408_at 2.2176955 1.1490613 2.2176955 up MRPS18B 28973 217758_s_at 2.5929067 1.3745703 2.5929067 up TM9SF3 56889 217800_s_at 3.3636453 1.7500256 3.3636453 up NDFIP1 80762 217848_s_at 2.1445165 1.1006523 2.1445165 up PPA1 5464 217870_s_at 3.6303937 1.860126 3.6303937 up CMPK1 51727 217956_s_at 3.1090586 1.6364778 3.1090586 up ENOPH1 58478 217957_at 2.0236645 1.0169702 2.0236645 up C16orf80 29105 218050_at 2.5442214 1.3472242 2.5442214 up UFM1 51569 218073_s_at 2.1446059 1.1007125 2.1446059 up TMEM48 55706 218098_at 3.0974994 1.631104 3.0974994 up ARFGEF2 10564 218286_s_at 2.660166 1.4115163 2.660166 up RNF7 9616 218341_at 2.027212 1.0194969 2.027212 up PPCS 79717 218375_at 2.236722 1.1613859 2.236722 up NUDT9 53343 218449_at 2.3719354 1.2460647 2.3719354 up UFSP2 55325 218490_s_at 3.7346 1.9009538 3.7346 up ZNF302 55900 218668_s_at 4.0544324 2.0195 4.0544324 up RAP2C 57826 218674_at 2.5650594 1.3589922 2.5650594 up C5orf44 80006 218679_s_at 2.005552 1.0039994 2.005552 up VPS28 51160 218723_s_at 2.0251186 1.0180064 2.0251186 up C13orf15 28984 218728_s_at 3.21045 1.6827755 3.21045 up CNIH4 29097 218842_at 2.7198107 1.4435062 2.7198107 up RPAP3 79657 219029_at 4.1824656 2.0643537 4.1824656 up C5orf28 64417 219137_s_at 2.0072687 1.0052338 2.0072687 up MFF 56947 219178_at 2.0148942 1.0107042 2.0148942 up QTRTD1 79691 219191_s_at 2.1153312 1.0808835 2.1153312 up BIN2 51411
219286_s_at 3.015412 1.5923551 3.015412 up RBM15 64783 219292_at 3.6521766 1.8687565 3.6521766 up THAP1 55145 219303_at 4.5703297 2.1922982 4.5703297 up RNF219 79596 219317_at 2.9965558 1.5833052 2.9965558 up POLI 11201 219439_at 2.600284 1.3786693 2.600284 up C1GALT1 56913 219534_x_at 2.1521416 1.105773 2.1521416 up CDKN1C 1028 219571_s_at 2.706211 1.4362744 2.706211 up ZNF12 7559 219620_x_at 2.0686991 1.0487238 2.0686991 up C9orf167 54863 219938_s_at 2.0293682 1.0210305 2.0293682 up PSTPIP2 9050 220132_s_at 3.7364144 1.9016545 3.7364144 up CLEC2D 29121 220219_s_at 6.0372252 2.5938857 6.0372252 up LOC100133503 /// LOC644397 /// LRRC37A /// LRRC37A2 /// LRRC37A3 /// LRRC37A4 100133503 /// 374819 /// 474170 /// 55073 /// 644397 /// 9884 220741_s_at 2.0123007 1.0088459 2.0123007 up PPA2 27068 220888_s_at 4.2497973 2.087394 4.2497973 up CASS4 57091 220954_s_at 3.10887 1.6363903 3.10887 up PILRB 29990 221014_s_at 7.3500667 2.8777573 7.3500667 up RAB33B 83452 221020_s_at 2.1128638 1.0791998 2.1128638 up SLC25A32 81034 221492_s_at 2.8898466 1.5309929 2.8898466 up ATG3 64422 221531_at 2.6816247 1.4231073 2.6816247 up WDR61 80349 221896_s_at 2.2000377 1.1375283 2.2000377 up HIGD1A 25994 222014_x_at 2.3751101 1.2479944 2.3751101 up MTO1 25821 222035_s_at 2.5385866 1.3440255 2.5385866 up PAPOLA 10914 222149_x_at 4.1617413 2.0571873 4.1617413 up GOLGA8C /// GOLGA8D /// GOLGA8E /// GOLGA8F /// GOLGA8G 100132565 /// 100132979 /// 283768 /// 390535 /// 729786 222150_s_at 2.7442076 1.4563897 2.7442076 up PION 54103 222203_s_at 2.703223 1.4346806 2.703223 up RDH14 57665
222233_s_at 2.0318244 1.0227757 2.0318244 up DCLRE1C 64421 222317_at 5.2990704 2.4057393 5.2990704 up PDE3B 5140 32088_at 3.568559 1.8353416 3.568559 up BLZF1 8548 36920_at 3.268764 1.7087452 3.268764 up MTM1 4534 40189_at 2.5402513 1.3449712 2.5402513 up SET 6418 64408_s_at 2.2177732 1.1491119 2.2177732 up CALML4 91860 64432_at 2.2718894 1.1838926 2.2718894 up C12orf47 51275 81737_at 3.4126477 1.7708915 3.4126477 up 222488_s_at 2.2635598 1.1785934 2.2635598 up DCTN4 51164 222552_at 2.8886023 1.5303715 2.8886023 up GOLT1B 51026 222602_at 4.9034333 2.2937922 4.9034333 up UBA6 55236 222604_at 3.4929035 1.8044268 3.4929035 up GTF3C3 9330 222637_at 2.3651495 1.2419313 2.3651495 up COMMD10 51397 222663_at 2.4941976 1.3185757 2.4941976 up RIOK2 55781 222673_x_at 3.33491 1.7376478 3.33491 up FAM122B 159090 222808_at 12.744482 3.6718009 12.744482 up ALG13 79868 222848_at 3.2602556 1.704985 3.2602556 up CENPK 64105 222849_s_at 2.0241768 1.0173354 2.0241768 up SCRN3 79634 223071_at 3.9794643 1.9925742 3.9794643 up IER3IP1 51124 223087_at 2.8826504 1.5273958 2.8826504 up ECHDC1 55862 223096_at 2.5942595 1.3753228 2.5942595 up NOP58 51602 223173_at 5.3462133 2.4185174 5.3462133 up SPNS1 83985 223187_s_at 2.238267 1.1623821 2.238267 up ORMDL1 94101 223204_at 4.7405343 2.2450497 4.7405343 up C4orf18 51313 223294_at 2.1925864 1.1326337 2.1925864 up CXorf26 51260 223310_x_at 4.2215314 2.0777664 4.2215314 up PNPLA8 50640 223444_at 3.999906 1.9999661 3.999906 up SENP7 57337
223590_at 2.3209178 1.2146955 2.3209178 up ZNF700 90592 224009_x_at 2.0140963 1.0101327 2.0140963 up DHRS9 10170 224319_s_at 2.2618742 1.1775187 2.2618742 up SMCR7L 54471 224436_s_at 4.226582 2.0794914 4.226582 up NIPSNAP3A 25934 224579_at 2.1896427 1.1306955 2.1896427 up SLC38A1 81539 224596_at 2.400413 1.2632827 2.400413 up SLC44A1 23446 224643_at 2.7826235 1.4764457 2.7826235 up PRRC1 133619 224660_at 2.4571977 1.2970139 2.4571977 up PIGY 84992 224662_at 2.5161862 1.3312387 2.5161862 up KIF5B 3799 224731_at 3.1694982 1.6642544 3.1694982 up HMGB1 3146 224761_at 2.3227959 1.2158624 2.3227959 up GNA13 10672 224769_at 7.762203 2.9564662 7.762203 up 224843_at 4.8239026 2.2702007 4.8239026 up SLAIN2 57606 224846_at 5.7858047 2.5325177 5.7858047 up SHKBP1 92799 224892_at 3.357924 1.7475696 3.357924 up PLDN 26258 224893_at 3.7713377 1.9150764 3.7713377 up ATL3 25923 224899_s_at 2.956156 1.5637224 2.956156 up MAGT1 84061 225022_at 2.6884332 1.4267656 2.6884332 up GOPC 57120 225053_at 2.299793 1.201504 2.299793 up CNOT7 29883 225256_at 2.1685789 1.1167499 2.1685789 up 225268_at 2.2366102 1.1613139 2.2366102 up KPNA4 3840 225290_at 6.723538 2.7492206 6.723538 up ETNK1 55500 225310_at 2.63891 1.3999422 2.63891 up RBMX 27316 225447_at 3.145636 1.6533518 3.145636 up GPD2 2820 225479_at 2.1526935 1.106143 2.1526935 up LRRC58 116064 225512_at 3.2354023 1.6939452 3.2354023 up ZBTB38 253461 225646_at 2.319081 1.2135533 2.319081 up CTSC 1075
225676_s_at 2.1797526 1.1241645 2.1797526 up WDSOF1 25879 225702_at 2.0809262 1.0572258 2.0809262 up C8orf76 84933 225710_at 3.8972254 1.9624474 3.8972254 up GNB4 59345 225766_s_at 3.9626026 1.9864483 3.9626026 up TNPO1 3842 225811_at 2.0801017 1.0566541 2.0801017 up C11orf58 10944 225885_at 11.29698 3.4978652 11.29698 up EEA1 8411 225890_at 2.1235287 1.0864636 2.1235287 up C20orf72 92667 225892_at 4.5099487 2.173111 4.5099487 up IREB2 3658 225904_at 3.0579312 1.612556 3.0579312 up C1orf96 126731 225919_s_at 2.9495287 1.5604844 2.9495287 up C9orf72 203228 225945_at 3.170951 1.6649156 3.170951 up ZNF655 79027 225963_at 3.080541 1.6231837 3.080541 up KLHDC5 57542 226037_s_at 2.0047486 1.0034213 2.0047486 up TAF9B 51616 226128_at 2.373134 1.2467935 2.373134 up 226259_at 2.5932388 1.374755 2.5932388 up EXOC6 54536 226276_at 3.4704342 1.7951162 3.4704342 up TMEM167A 153339 226280_at 4.043502 2.0156052 4.043502 up BNIP2 663 226335_at 3.055146 1.6112413 3.055146 up RPS6KA3 6197 226399_at 5.1917005 2.376207 5.1917005 up 226472_at 3.160472 1.66014 3.160472 up PPIL4 85313 226626_at 2.0151708 1.010902 2.0151708 up THOC2 57187 226851_at 2.17759 1.1227323 2.17759 up LYPLAL1 127018 226910_at 2.7636085 1.4665532 2.7636085 up 226924_at 2.4711177 1.3051637 2.4711177 up LOC400657 400657 226965_at 2.2714643 1.1836227 2.2714643 up FAM116A 201627 227012_at 5.088982 2.347377 5.088982 up SLC25A40 55972 227038_at 2.976962 1.5738409 2.976962 up SGMS2 166929
227158_at 2.2472093 1.1681346 2.2472093 up C14orf126 112487 227162_at 2.3223517 1.2155864 2.3223517 up ZBTB26 57684 227182_at 2.0196722 1.014121 2.0196722 up SUSD3 203328 227408_s_at 3.4576154 1.7897774 3.4576154 up SNX25 83891 227531_at 2.7875133 1.4789786 2.7875133 up 227565_at 2.3045657 1.2044948 2.3045657 up 227685_at 6.951317 2.7972863 6.951317 up TMF1 7110 227772_at 2.7123115 1.4395229 2.7123115 up 227796_at 2.1019468 1.0717262 2.1019468 up ZFP62 643836 227813_at 2.658994 1.4108804 2.658994 up THAP6 152815 227990_at 2.3580933 1.2376208 2.3580933 up SLU7 10569 228023_x_at 2.2881322 1.1941705 2.2881322 up AMY2B 280 228026_at 2.0628734 1.0446553 2.0628734 up RP5-1000E10.4 80143 228029_at 4.6898 2.2295263 4.6898 up ZNF721 170960 228174_at 3.2301548 1.6916033 3.2301548 up C9orf126 286205 228243_at 2.2332492 1.1591443 2.2332492 up 228254_at 3.045677 1.6067629 3.045677 up STAM2 10254 228477_at 2.779851 1.4750075 2.779851 up ARGLU1 55082 228654_at 2.0768127 1.0543711 2.0768127 up SPIN4 139886 228718_at 5.9359474 2.5694783 5.9359474 up ZNF4451710 228745_at 3.820965 1.9339371 3.820965 up SGTB 54557 228751_at 3.858551 1.9480592 3.858551 up CLK4 57396 228789_at 2.5081556 1.3266269 2.5081556 up MTMR6 9107 228822_s_at 2.757469 1.4633446 2.757469 up USP16 10600 228941_at 7.54503 2.9155266 7.54503 up ALG10B 144245 229007_at 10.436163 3.3835194 10.436163 up LOC283788 283788
229043_at 4.155697 2.0550904 4.155697 up PAPD5 64282 229194_at 4.5393343 2.1824808 4.5393343 up PCGF5 84333 229303_at 2.2110631 1.1447402 2.2110631 up 229383_at 2.2578793 1.1749684 2.2578793 up 229391_s_at 2.7314146 1.4496483 2.7314146 up FAM26F 441168 229431_at 2.0836356 1.059103 2.0836356 up RFXAP 5994 229436_x_at 2.1641474 1.1137987 2.1641474 up BRCC3 79184 229531_at 2.4246862 1.277798 2.4246862 up 229778_at 16.035036 4.0031557 16.035036 up C12orf39 80763 229804_x_at 4.799342 2.2628367 4.799342 up CBWD1 /// CBW D2 /// CBWD3 /// CBWD6 150472 /// 445571 /// 55871 /// 644019 229937_x_at 2.2331238 1.1590632 2.2331238 up LILRB1 10859 230006_s_at 7.4277635 2.892928 7.4277635 up SVIP 258010 230029_x_at 4.3121986 2.1084237 4.3121986 up UBR3 130507 230078_at 3.0928473 1.6289356 3.0928473 up RAPGEF6 51735 230379_x_at 2.072186 1.0511535 2.072186 up C2orf56 55471 230383_x_at 2.1566954 1.1088225 2.1566954 up 230416_at 5.4908514 2.4570298 5.4908514 up 231896_s_at 2.8662255 1.5191522 2.8662255 up DENR 8562 232007_at 3.8566852 1.9473614 3.8566852 up AGPAT5 55326 232024_at 3.2778392 1.7127451 3.2778392 up GIMAP2 26157 232297_at 2.8058367 1.488431 2.8058367 up 232515_at 2.7987568 1.4847862 2.7987568 up 232524_x_at 2.056318 1.0400635 2.056318 up ANAPC4 29945 233282_at 5.7810507 2.5313318 5.7810507 up 233500_x_at 2.898574 1.5353434 2.898574 up CLEC2D 29121 233665_x_at 2.4454756 1.290115 2.4454756 up MTO1 25821 37
234304_s_at 2.8669405 1.5195119 2.8669405 up IPO11 51194 235158_at 3.0380504 1.6031458 3.0380504 up TMEM209 84928 235170_at 2.9216216 1.5467693 2.9216216 up ZNF92 168374 235198_at 2.4675722 1.3030922 2.4675722 up OSTM1 28962 235274_at 4.2687597 2.093817 4.2687597 up 235276_at 3.4136002 1.7712941 3.4136002 up EPSTI1 94240 235535_x_at 4.334274 2.1157904 4.334274 up FRG1 /// FRG1B /// LOC100134091 /// LOC642236 100134091 /// 2483 /// 284802 /// 642236 235611_at 4.4122415 2.1415117 4.4122415 up 235620_x_at 3.2163763 1.6854362 3.2163763 up ZMYM5 9205 235798_at 6.4243717 2.6835554 6.4243717 up TMEM170B 100113407 236166_at 2.3543537 1.235331 2.3543537 up LOC285147 285147 236203_at 2.9139893 1.5429956 2.9139893 up HLA-DQA1 3117 236539_at 4.11302 2.040198 4.11302 up PTPN22 26191 237289_at 2.2961657 1.1992267 2.2961657 up CREB1 1385 239482_x_at 3.2488017 1.6999077 3.2488017 up ZNF708 7562 242136_x_at 3.0351825 1.6017833 3.0351825 up MGC70870 403340 242263_at 3.4334872 1.7796745 3.4334872 up TMED5 50999 242521_at 2.1958516 1.1347805 2.1958516 up 242593_at 2.1079285 1.0758259 2.1079285 up 242648_at 3.4477534 1.7856566 3.4477534 up KLHL8 57563 244663_at 2.0190845 1.0137013 2.0190845 up 1552291_at 2.4562533 1.2964593 2.4562533 up PIGX 54965 1552330_at 2.2051635 1.1408856 2.2051635 up MGC16385 92806 1552703_s_at 2.0806806 1.0570556 2.0806806 up CARD16 ///CASP1 114769 /// 834 1567214_a_at 2.7961278 1.4834303 2.7961278 up PNN 5411 1553043_a_at 2.1436055 1.1000395 2.1436055 up CD300LF 146722 38
1553979_at 3.4571354 1.7895771 3.4571354 up 1554021_a_at 3.5871427 1.8428352 3.5871427 up ZNF12 7559 1554606_at 2.7443366 1.4564575 2.7443366 up CEP120 153241 1554678_s_at 3.6869023 1.8824092 3.6869023 up HNRPDL 9987 1555762_s_at 3.8031762 1.9272047 3.8031762 up RBM15 64783 1555780_a_at 3.8633564 1.9498547 3.8633564 up RHEB 6009 1556285_s_at 2.3047078 1.2045838 2.3047078 up PPA2 27068 1557066_at 2.8619654 1.5170063 2.8619654 up LUC7L 55692 1557915_s_at 2.330413 1.2205857 2.330413 up GSTO1 9446 1558136_s_at 2.0875757 1.0618285 2.0875757 up TAF11 6882 1565162_s_at 3.3466935 1.7427365 3.3466935 up MGST1 4257 1568592_at 2.5909886 1.3735027 2.5909886 up TRIM69 140691 1568955_at 5.440377 2.4437068 5.440377 up SRGAP2P1 653464 1569139_s_at 2.394263 1.2595817 2.394263 up FAM53A 152877 39
Down Regulated Genes # Notes : DOWN - Fold change([Test] vs [Control]) #Only down-regulated entities from parent entity list : #Fold change >= 2.0 #Entity List : T Test unpaired p-value P <= 0.05 #Interpretation : New Parameter #Experiment : MAS5_without3 #Fold-Change cut-off : 2.0 #Pairing option : All against single condition #Condition pairs : #[Test] vs [Control] #Minimum number of pairs:1 out of 1 condition pairs. # Technology : Affymetrix.GeneChip.HG-U133_Plus_2 # Owner : gxuser # Created On : Thu Dec 15 21:01:04 PST 2011 179_at -3.1323285 -1.64723553.1323285 down PMS2L11 441263 200844_s_at -2.506923 -1.3259176 2.506923 down PRDX6 9588 200908_s_at -4.648077 -2.216634 4.648077 down RPLP2 6181 201059_at -2.2916496 -1.1963865 2.2916496 down CTTN 2017 202028_s_at -4.653457 -2.218303 4.653457 down RPL38 6169 203662_s_at -3.1262074 -1.6444135 3.1262074 down TMOD1 7111 203899_s_at -2.6229813 -1.3912076 2.6229813 down CRCP 27297 205170_at -2.4707286 -1.3049365 2.4707286 down STAT2 6773 206438_x_at -2.113238 -1.0794554 2.113238 down TCTN2 79867 207688_s_at -3.585278 -1.842085 3.585278 down 209169_at -11.641426 -3.5411959 11.641426 down GPM6B 2824 Probe set ID Fold change([T est] vs [Control]) Log fold change([ Test] vs [control]) Absolute fold change([T est] vs [control]) Regulat ion ([Test] vs [Contro l]) Gene symbol Entrez Gene
210354_at -2.5150347 -1.3305783 2.5150347 down IFNG 3458 210500_at -2.387605 -1.2555641 2.387605 down 210556_at -2.075008 -1.0531169 2.075008 down NFATC3 4775 210969_at -2.9719222 -1.5713964 2.9719222 down PKN2 5586 212383_at -2.119043 -1.083413 2.119043 down ATP6V0A1 535 212427_at -2.4400408 -1.2869053 2.4400408 down KIAA0368 23392 212468_at -4.21961 -2.0771098 4.21961 down SPAG9 9043 212679_at -2.6407435 -1.4009442 2.6407435 down TBL2 26608 213274_s_at -3.5446072 -1.8256258 3.5446072 down CTSB 1508 213350_at -6.519015 -2.704654 6.519015 down RPS11 6205 213621_s_at -2.3890533 -1.2564391 2.3890533 down GUK1 2987 213650_at -3.088151 -1.6267433 3.088151 down GOLGA8A /// GOLGA8B 23015 /// 440270 213810_s_at -2.9348311 -1.5532775 2.9348311 down AKIRIN2 55122 213813_x_at -4.6127014 -2.205612 4.6127014 down 214000_s_at -10.277619 -3.3614342 10.277619 down RGS10 6001 214041_x_at -7.1359153 -2.8350985 7.1359153 down RPL37A 6168 214149_s_at -4.8733435 -2.2849119 4.8733435 down ATP6V0E1 8992 214284_s_at -2.3637133 -1.241055 2.3637133 down FGF18 8817 214322_at -2.3460717 -1.2302471 2.3460717 down CAMK2G 818 215040_at -2.1654541 -1.1146697 2.1654541 down RNASEH2B 79621 215175_at -2.9989753 -1.5844697 2.9989753 down PCNX 22990 215250_at -2.265798 -1.1800193 2.265798 down TMEM111 55831 215525_at -2.5328817 -1.3407797 2.5328817 down 216183_at -2.1992989 -1.1370436 2.1992989 down TGM2 7052 216263_s_at -2.1142485 -1.080145 2.1142485 down NGDN 25983 41
216540_at -2.0514538 -1.0366467 2.0514538 down TRD@ 6964 216740_at -2.3423767 -1.2279731 2.3423767 down 216751_at -2.3378737 -1.225197 2.3378737 down 217053_x_at -2.3310647 -1.2209891 2.3310647 down ETV1 2115 217362_x_at -2.4369843 -1.285097 2.4369843 down HLA-DRB6 3128 217383_at -2.2445076 -1.1663989 2.2445076 down PGK1 5230 217692_at -3.2905254 -1.718318 3.2905254 down MAGOH2 548332 218173_s_at -2.3560247 -1.2363547 2.3560247 down WHSC1L1 54904 218448_at -2.4195685 -1.2747499 2.4195685 down C20orf11 54994 218595_s_at -2.2403162 -1.1637024 2.2403162 down HEATR1 55127 221943_x_at -4.3655314 -2.1261573 4.3655314 down RPL38 6169 33768_at -2.112162 -1.0787206 2.112162 down DMWD 1762 35201_at -2.2332401 -1.1591383 2.2332401 down HNRNPL 3191 36554_at -2.2925758 -1.1969695 2.2925758 down ASMTL 8623 36888_at -2.4099982 -1.2690321 2.4099982 down HAUS5 23354 223052_x_at -3.6137075 -1.8534797 3.6137075 down 223430_at -2.264384 -1.1791186 2.264384 down SIK2 23235 223498_at -2.1271095 -1.0888942 2.1271095 down CYTSB 92521 224321_at -7.039534 -2.81548 7.039534 down TMEFF2 23671 224346_at -4.104861 -2.0373333 4.104861 down 224375_at -2.9156728 -1.5438288 2.9156728 down 225270_at -2.1064858 -1.0748382 2.1064858 down NEO1 4756 226412_at -3.0519266 -1.6097202 3.0519266 down SFRS18 25957 226824_at -2.8627605 -1.5174071 2.8627605 down CPXM2 119587 226928_x_at -4.2338843 -2.081982 4.2338843 down SLC25A37 51312 227092_at -2.2448487 -1.1666182 2.2448487 down 227098_at -2.129652 -1.0906177 2.129652 down DUSP18 150290 42
227513_s_at -2.5867555 -1.3711437 2.5867555 down LRRFIP1 9208 227629_at -2.6420622 -1.4016644 2.6420622 down PRLR 5618 227890_at -2.371096 -1.245554 2.371096 down TMEM198 130612 228309_at -2.5875382 -1.3715802 2.5875382 down 228500_at -2.0811968 -1.0574135 2.0811968 down THAP8 199745 228982_s_at -3.37386 -1.7544 3.37386 down USP42 84132 229420_at -4.6825643 -2.2272987 4.6825643 down 229515_at -2.1758888 -1.1216048 2.1758888 down PAWR 5074 229696_at -2.7418253 -1.4551367 2.7418253 down FECH 2235 229803_s_at -2.3430557 -1.2283913 2.3430557 down 229987_at -2.4018304 -1.2641343 2.4018304 down 230213_at -2.3014808 -1.2025623 2.3014808 down C19orf43 79002 230533_at -2.781146 -1.4756795 2.781146 down ZMYND8 23613 230535_s_at -3.6763089 -1.878258 3.6763089 down 230888_at -2.8701932 -1.5211478 2.8701932 down WDR91 29062 230942_at -2.064273 -1.0456339 2.064273 down CMTM5 116173 231061_at -2.8853667 -1.5287547 2.8853667 down 231165_at -2.4704857 -1.3047947 2.4704857 down 232844_at -4.792257 -2.2607052 4.792257 down IFT140 9742 232896_at -3.2710025 -1.7097329 3.2710025 down ERBB2IP 55914 233008_at -2.0559719 -1.0398206 2.0559719 down FLJ12825 440101 233204_at -3.7229543 -1.8964479 3.7229543 down LOC728153 728153 233627_at -2.2108004 -1.1445688 2.2108004 down 234004_at -2.3905282 -1.2573295 2.3905282 down TTC28 23331 234033_at -2.784868 -1.4776089 2.784868 down 234157_at -2.1415348 -1.0986451 2.1415348 down 234255_at -4.2990203 -2.104008 4.2990203 down 43
234464_s_at -4.215364 -2.0756571 4.215364 down EME1 146956 234471_s_at -2.3569345 -1.2369117 2.3569345 down NCOA5 57727 235452_at -2.1045704 -1.0735258 2.1045704 down 235521_at -3.2826107 -1.7148436 3.2826107 down HOXA3 3200 235679_at -2.0418518 -1.0298781 2.0418518 down 236043_at -2.9541938 -1.5627645 2.9541938 down LOC100130175 100130175 236240_at -2.1068819 -1.0751094 2.1068819 down C4orf29 80167 236424_at -2.2730396 -1.1846228 2.2730396 down CEP250 11190 237181_at -3.4688492 -1.7944571 3.4688492 down 238499_at -2.8312345 -1.5014312 2.8312345 down SLC45A3 85414 238619_at -3.7922478 -1.9230533 3.7922478 down 238893_at -2.3265424 -1.2181875 2.3265424 down LOC338758 338758 239058_at -2.0700247 -1.0496479 2.0700247 down 239151_at -2.3139002 -1.2103267 2.3139002 down RP11-144G6.7 399753 239452_at -2.2393954 -1.1631093 2.2393954 down 239960_x_at -2.5935893 -1.37495 2.5935893 down LYRM7 90624 240159_at -3.0929213 -1.6289701 3.0929213 down SLC15A2 6565 240170_at -2.3162699 -1.2118033 2.3162699 down 240263_at -4.2400484 -2.0840807 4.2400484 down 240723_at -3.7558036 -1.9091216 3.7558036 down 241294_at -2.8465924 -1.509236 2.8465924 down 241391_at -5.7314973 -2.518912 5.7314973 down 241617_x_at -5.9179015 -2.5650856 5.9179015 down 241644_at -2.165558 -1.1147388 2.165558 down BOLA2 552900 241695_s_at -2.1880767 -1.1296633 2.1880767 down 241755_at -3.8008735 -1.926331 3.8008735 down UQCRC2 7385 44
241773_at -2.5461023 -1.3482903 2.5461023 down 241832_at -2.5366778 -1.3429403 2.5366778 down FAM98A 25940 241947_at -2.7087164 -1.4376093 2.7087164 down LOC100233209 100233209 242034_at -2.0661113 -1.046918 2.0661113 down FBXL17 64839 242117_at -3.3378801 -1.7389321 3.3378801 down 242134_at -2.726714 -1.4471633 2.726714 down 242693_at -4.0276437 -2.009936 4.0276437 down 242755_at -20.845972 -4.3816967 20.845972 down 242768_at -2.4577973 -1.2973659 2.4577973 down 242993_at -2.5750735 -1.3646137 2.5750735 down 243439_at -2.3151264 -1.211091 2.3151264 down ZNF418 147686 243515_at -3.097059 -1.6308988 3.097059 down 243527_at -2.0916805 -1.0646625 2.0916805 down 243533_x_at -4.117145 -2.0416443 4.117145 down 243939_at -2.5393791 -1.3444757 2.5393791 down 243966_at -2.4216232 -1.2759744 2.4216232 down 244021_at -2.2777889 -1.187634 2.2777889 down 244096_at -4.7029247 -2.2335582 4.7029247 down 244674_at -2.858586 -1.5153017 2.858586 down 244766_at -3.8125901 -1.9307715 3.8125901 down LOC440354 /// LOC595101 /// LOC641298 /// LOC728423 /// LOC729513 /// SMG1 23049 /// 440354 /// 595101 /// 641298 /// 728423 /// 729513 1552829_at -2.8479142 -1.5099057 2.8479142 down 1553575_at -3.3971965 -1.7643447 3.3971965 down ND6 4541 1554597_at -2.2907481 -1.1958188 2.2907481 down 1554852_a_at -2.0540009 -1.0384368 2.0540009 down KIAA1257 57501 1556373_a_at -3.2720826 -1.7102091 3.2720826 down 45
1556761_at -3.7914577 -1.9227526 3.7914577 down 1557626_at -2.049583 -1.0353304 2.049583 down 1557814_a_at -2.1935897 -1.1332937 2.1935897 down 1558430_at -2.5522208 -1.3517531 2.5522208 down 1558685_a_at -2.2272408 -1.1552576 2.2272408 down LOC158960 158960 1558793_at -2.5977046 -1.3772374 2.5977046 down 1559119_at -3.6324193 -1.8609308 3.6324193 down 1559190_s_at -2.3350012 -1.2234234 2.3350012 down RDH13 112724 1559566_at -2.372706 -1.2465333 2.372706 down FBXO42 54455 1559658_at -2.5461755 -1.3483318 2.5461755 down C15orf29 79768 1559765_a_at -2.006444 -1.0046409 2.006444 down LOC286254 286254 1559910_at -2.3306189 -1.220713 2.3306189 down 1560264_at -3.5281072 -1.8188944 3.5281072 down 1560396_at -2.3742745 -1.2474867 2.3742745 down KLHL6 89857 1560480_at -2.0777316 -1.0550092 2.0777316 down 1562069_at -2.0159624 -1.0114688 2.0159624 down 1562289_at -2.0202494 -1.0145334 2.0202494 down 1562463_at -2.1066792 -1.0749706 2.1066792 down 1563781_at -2.338762 -1.2257451 2.338762 down LOC285949 285949 1565535_x_at -2.2941356 -1.1979507 2.2941356 down 1565868_at -2.218658 -1.1496873 2.218658 down CD44 960 1570251_at -3.4866338 -1.8018348 3.4866338 down HECTD1 25831 1570496_at -2.3388374 -1.2257916 2.3388374 down 1570552_at -2.3848288 -1.2538857 2.3848288 down C18orf50 619463

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Table s1

  • 1. Autoimmune Related Genes 200033_at 2.2821743 DDX5 1655 202917_s_at 2.3067315 S100A8 6279 203535_at 2.0655162 S100A9 6280 210354_at -2.5150347 IFNG 3458 211971_s_at 2.1539035 LRPPRC 10128 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212740_at 2.3148327 PIK3R4 30849 216183_at -2.1992989 TGM2 7052 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 218286_s_at 2.660166 RNF7 9616 224321_at -7.039534 TMEFF2 23671 224731_at 3.1694982 HMGB1 3146 229937_x_at 2.2331238 LILRB1 10859 236203_at 2.9139893 HLA-DQA1 3117 236539_at 4.11302 PTPN22 26191 1565868_at -2.218658 CD44 960 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
  • 2. Neurotransmitter 202221_s_at 3.1532524 EP300 2033 202917_s_at 2.3067315 S100A8 6279 203535_at 2.0655162 S100A9 6280 204088_at 4.014536 P2RX4 5025 204112_s_at 3.7687378 HNMT 3176 210354_at -2.5150347 IFNG 3458 212224_at 2.4291317 ALDH1A1 216 213906_at 3.4120972 MYBL1 4603 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 217848_s_at 2.1445165 PPA1 5464 224321_at -7.039534 TMEFF2 23671 224731_at 3.1694982 HMGB1 3146 225885_at 11.29698 EEA1 8411 229515_at -2.1758888 PAWR 5074 229696_at -2.7418253 FECH 2235 237289_at 2.2961657 CREB1 1385 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
  • 3. Neoplastic Stem Cell 200685_at 7.447116 SFRS11 9295 200686_s_at 3.7865622 SFRS11 9295 201436_at 3.7113135 EIF4E 1977 202265_at 2.8984547 BMI1 648 203971_at 2.2034347 SLC31A1 1317 208700_s_at 2.137866 TKT 7086 209388_at 2.1912978 PAPOLA 10914 210354_at -2.5150347 IFNG 3458 211971_s_at 2.1539035 LRPPRC 10128 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212740_at 2.3148327 PIK3R4 30849 214511_x_at 2.2352204 FCGR1B 2210 FCGR1A /// FCGR1C 100132417 /// 217371_s_at 2.3721685 IL15 3600 222035_s_at 2.5385866 PAPOLA 10914 224321_at -7.039534 TMEFF2 23671 1565868_at -2.218658 CD44 960 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene 216950_s_at 2.078583 216950_s_at 2.078583 2209
  • 4. Brain Cancer 200015_s_at 2.147912 SEPT2 4735 201021_s_at 2.1561081 DSTN 11034 201436_at 3.7113135 EIF4E 1977 202221_s_at 3.1532524 EP300 2033 202265_at 2.8984547 BMI1 648 202917_s_at 2.3067315 S100A8 6279 203535_at 2.0655162 S100A9 6280 204088_at 4.014536 P2RX4 5025 204112_s_at 3.7687378 HNMT 3176 205611_at 5.6468973 TNFSF12 8742 208754_s_at 2.195824 NAP1L1 4673 209430_at 2.8247743 BTAF1 9044 210211_s_at 2.8531528 HSP90AA1 3320 210354_at -2.5150347 IFNG 3458 211075_s_at 2.094655 CD47 961 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212224_at 2.4291317 ALDH1A1 216 212672_at 2.725499 ATM 472 213581_at 2.1808512 PDCD2 5134 213857_s_at 2.057008 CD47 961 213906_at 3.4120972 MYBL1 4603 214328_s_at 2.3417025 HSP90AA1 3320 214709_s_at 3.2072523 KTN1 3895 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
  • 5. 216183_at -2.1992989 TGM2 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 217848_s_at 2.1445165 PPA1 5464 219534_x_at 2.1521416 CDKN1C 1028 35201_at -2.2332401 HNRNPL 3191 224321_at -7.039534 TMEFF2 23671 224731_at 3.1694982 HMGB1 3146 224899_s_at 2.956156 MAGT1 84061 225885_at 11.29698 EEA1 8411 226335_at 3.055146 RPS6KA3 6197 227629_at -2.6420622 PRLR 5618 229515_at -2.1758888 PAWR 5074 229696_at -2.7418253 FECH 2235 237289_at 2.2961657 CREB1 1385 1565868_at -2.218658 CD44 960
  • 6. Liver Cancer 200631_s_at 2.2673428 SET 6418 200685_at 7.447116 SFRS11 9295 200686_s_at 3.7865622 SFRS11 9295 201021_s_at 2.1561081 DSTN 11034 201059_at -2.2916496 CTTN 2017 201210_at 2.7075298 DDX3X 1654 201436_at 3.7113135 EIF4E 1977 201458_s_at 2.0512536 BUB3 9184 201470_at 2.1695194 GSTO1 9446 201652_at 2.3299637 COPS5 10987 202221_s_at 3.1532524 EP300 2033 202265_at 2.8984547 BMI1 648 202437_s_at 4.2736635 CYP1B1 1545 202614_at 2.6856213 SLC30A9 10463 202763_at 22.85227 CASP3 836 203535_at 2.0655162 S100A9 6280 204088_at 4.014536 P2RX4 5025 205170_at -2.4707286 STAT2 6773 205552_s_at 3.0171177 OAS1 4938 206158_s_at 2.4304378 CNBP 7555 208319_s_at 2.532502 RBM3 5935 208726_s_at 2.0053256 EIF2S2 8894 208796_s_at 2.481621 CCNG1 900 Probe set ID Fold change ([Test ] vs [control] ) (Fold change) Gene symbol Entrez Gene
  • 7. 21 209388_at 2.1912978 PAPOLA 10914 209503_s_at 2.2016048 PSMC5 5705 209902_at 3.8992784 ATR 545 210211_s_at 2.8531528 HSP90AA1 3320 210354_at -2.5150347 IFNG 3458 210969_at -2.9719222 PKN2 5586 211070_x_at 2.0338123 DBI 1622 211075_s_at 2.094655 CD47 961 211971_s_at 2.1539035 LRPPRC 10128 212063_at 2.0419557 CD44 960 212195_at 3.5542688 IL6ST 3572 212468_at -4.21961 SPAG9 9043 212672_at 2.725499 ATM 472 212984_at 6.865912 ATF2 1386 213857_s_at 2.057008 CD47 961 214328_s_at 2.3417025 HSP90AA1 3320 216183_at -2.1992989 TGM2 7052 216321_s_at 3.5545704 NR3C1 2908 217371_s_at 2.3721685 IL15 3600 217848_s_at 2.1445165 PPA1 5464 217957_at 2.0236645 C16orf80 29105 218098_at 3.0974994 ARFGEF2 10564 219439_at 2.600284 C1GALT1 56913 219534_x_at 2.1521416 CDKN1C 1028 222035_s_at 2.5385866 PAPOLA 10914 222317_at 5.2990704 PDE3B 5140 40189_at 2.5402513 SET 6418
  • 8. 222848_at 3.2602556 CENPK 64105 224321_at -7.039534 TMEFF2 23671 224579_at 2.1896427 SLC38A1 81539 224899_s_at 2.956156 MAGT1 84061 225892_at 4.5099487 IREB2 3658 237289_at 2.2961657 CREB1 1385 CARD16 /// CASP1 834 114769 /// 1557915_s_at 2.330413 GSTO1 9446 1565868_at -2.218658 CD44 960 1552703_s_at 2.0806806
  • 9. Annex Upregulated genes # Notes : UP - Fold change([Test] vs [Control]) #Only up-regulated entities from parent entity list : #Fold change >= 2.0 #Entity List : T Test unpaired p-value P <= 0.05 #Interpretation : New Parameter #Experiment : MAS5_without3 #Fold-Change cut-off : 2.0 #Pairing option : All against single condition #Condition pairs : #[Test] vs [Control] #Minimum number of pairs:1 out of 1 condition pairs. # Technology : Affymetrix.GeneChip.HG-U133_Plus_2 # Owner : gxuser # Created On : Thu Dec 15 21:01:04 PST 2011 200015_s_at 2.147912 1.1029348 2.147912 up SEPT2 4735 200033_at 2.2821743 1.1904091 2.2821743 up DDX5 1655 200056_s_at 3.750907 1.9072394 3.750907 up C1D 10438 200631_s_at 2.2673428 1.1810025 2.2673428 up SET 6418 200662_s_at 2.5668206 1.3599825 2.5668206 up TOMM20 9804 200685_at 7.447116 2.8966818 7.447116 up SFRS11 9295 200686_s_at 3.7865622 1.9208887 3.7865622 up SFRS11 9295 Probe set ID Fold change([T est] vs [Control]) Log fold change([ Test] vs [control]) Absolute fold change([ Test] vs [control]) Regulat ion ([Test] vs [Contro l]) Gene symbol Entrez Gene
  • 10. 200761_s_at 2.6137571 1.3861251 2.6137571 up ARL6IP5 10550 200877_at 2.1688275 1.1169153 2.1688275 up CCT4 10575 200893_at 2.1520174 1.1056896 2.1520174 up TRA2B 6434 200973_s_at 2.2201118 1.1506324 2.2201118 up TSPAN3 10099 201012_at 3.2795737 1.7135082 3.2795737 up ANXA1 301 201016_at 3.2915227 1.7187551 3.2915227 up EIF1AX 1964 201021_s_at 2.1561081 1.1084296 2.1561081 up DSTN 11034 201084_s_at 2.9962494 1.5831578 2.9962494 up BCLAF1 9774 201153_s_at 4.4735823 2.1614306 4.4735823 up MBNL1 4154 201177_s_at 3.0397127 1.603935 3.0397127 up UBA2 10054 201197_at 2.6190262 1.3890305 2.6190262 up AMD1 262 201200_at 2.040988 1.0292677 2.040988 up CREG1 8804 201210_at 2.7075298 1.4369773 2.7075298 up DDX3X 1654 201273_s_at 4.4369597 2.1495714 4.4369597 up SRP9 6726 201304_at 4.268587 2.0937586 4.268587 up NDUFA5 4698 201312_s_at 2.6486118 1.4052364 2.6486118 up SH3BGRL 6451 201344_at 2.1205077 1.0844097 2.1205077 up UBE2D2 7322 201436_at 3.7113135 1.8919299 3.7113135 up EIF4E 1977 201449_at 2.3981822 1.2619413 2.3981822 up TIA1 7072 201458_s_at 2.0512536 1.0365058 2.0512536 up BUB3 9184 201470_at 2.1695194 1.1173755 2.1695194 up GSTO1 9446 201534_s_at 4.990514 2.3191884 4.990514 up UBL3 5412 201619_at 4.69614 2.2314754 4.69614 up PRDX3 10935 201637_s_at 2.5457363 1.348083 2.5457363 up FXR1 8087 201652_at 2.3299637 1.2203075 2.3299637 up COPS5 10987 201687_s_at 3.1252825 1.6439866 3.1252825 up API5 8539 201701_s_at 3.2309306 1.6919497 3.2309306 up PGRMC2 10424 201807_at 2.2103863 1.1442986 2.2103863 up VPS26A 9559
  • 11. 201816_s_at 3.526379 1.8181876 3.526379 up GBAS 2631 201849_at 2.8053339 1.4881725 2.8053339 up BNIP3 664 201880_at 2.0790484 1.0559233 2.0790484 up ARIH1 25820 201955_at 4.2731457 2.0952985 4.2731457 up CCNC 892 201990_s_at 2.5158024 1.3310186 2.5158024 up CREBL2 1389 202088_at 3.1139526 1.638747 3.1139526 up SLC39A6 25800 202113_s_at 2.4796548 1.3101393 2.4796548 up SNX2 6643 202126_at 4.1493287 2.052878 4.1493287 up PRPF4B 8899 202163_s_at 3.68092 1.8800664 3.68092 up CNOT8 9337 202221_s_at 3.1532524 1.6568407 3.1532524 up EP300 2033 202258_s_at 2.0979457 1.0689774 2.0979457 up N4BP2L2 10443 202265_at 2.8984547 1.5352839 2.8984547 up BMI1 648 202437_s_at 4.2736635 2.0954733 4.2736635 up CYP1B1 1545 202484_s_at 2.3324444 1.2218428 2.3324444 up MBD2 8932 202614_at 2.6856213 1.4252559 2.6856213 up SLC30A9 10463 202653_s_at 3.663287 1.8731387 3.663287 up MARCH7 64844 202675_at 2.3853893 1.2542248 2.3853893 up SDHB 6390 202763_at 22.85227 4.5142655 22.85227 up CASP3 836 202780_at 3.0060108 1.5878502 3.0060108 up OXCT1 5019 202797_at 4.3861456 2.1329536 4.3861456 up SACM1L 22908 202850_at 2.6885805 1.4268447 2.6885805 up ABCD3 5825 202882_x_at 2.0234632 1.0168266 2.0234632 up NOL7 51406 202917_s_at 2.3067315 1.20585 2.3067315 up S100A8 6279 202930_s_at 3.4169254 1.7726988 3.4169254 up SUCLA2 8803 203024_s_at 3.0551512 1.6112438 3.0551512 up C5orf15 56951 203303_at 2.365663 1.2422446 2.365663 up DYNLT3 6990 203341_at 2.3556535 1.2361274 2.3556535 up CEBPZ 10153 203386_at 2.0921066 1.0649563 2.0921066 up TBC1D4 9882
  • 12. 203493_s_at 4.4541926 2.155164 4.4541926 up CEP57 9702 203535_at 2.0655162 1.0465025 2.0655162 up S100A9 6280 203543_s_at 7.5556283 2.9175518 7.5556283 up KLF9 687 203593_at 5.251859 2.3928282 5.251859 up CD2AP 23607 203646_at 2.4614396 1.2995024 2.4614396 up FDX1 2230 203651_at 5.5294204 2.4671283 5.5294204 up ZFYVE16 9765 203791_at 7.415294 2.890504 7.415294 up DMXL1 1657 203799_at 4.088819 2.0316842 4.088819 up CD302 9936 203804_s_at 3.077349 1.621688 3.077349 up CROP 51747 203971_at 2.2034347 1.1397542 2.2034347 up SLC31A1 1317 203991_s_at 3.143972 1.6525884 3.143972 up KDM6A 7403 204062_s_at 4.133921 2.0475109 4.133921 up ULK2 9706 204088_at 4.014536 2.0052333 4.014536 up P2RX4 5025 204112_s_at 3.7687378 1.9140815 3.7687378 up HNMT 3176 204202_at 3.8926911 1.9607679 3.8926911 up IQCE 23288 204215_at 2.8033874 1.4871712 2.8033874 up C7orf23 79161 204243_at 2.1997342 1.1373292 2.1997342 up RLF 6018 204244_s_at 3.6029305 1.8491708 3.6029305 up DBF4 10926 204249_s_at 2.5389519 1.344233 2.5389519 up LMO2 4005 204342_at 7.0244246 2.81238 7.0244246 up SLC25A24 29957 204417_at 2.0459807 1.0327924 2.0459807 up GALC 2581 204523_at 2.0451038 1.032174 2.0451038 up ZNF140 7699 204747_at 2.2767854 1.1869982 2.2767854 up IFIT3 3437 205237_at 3.3777223 1.7560507 3.3777223 up FCN1 2219 205250_s_at 4.0188513 2.0067832 4.0188513 up CEP290 80184 205288_at 4.1936016 2.0681899 4.1936016 up CDC14A 8556 205292_s_at 2.0129104 1.009283 2.0129104 up HNRNPA2B1 3181
  • 13. 205483_s_at 3.0571854 1.6122041 3.0571854 up ISG15 9636 205552_s_at 3.0171177 1.593171 3.0171177 up OAS1 4938 205611_at 5.6468973 2.4974585 5.6468973 up TNFSF12 8742 205715_at 3.0607252 1.6138735 3.0607252 up BST1 683 205716_at 3.306919 1.7254877 3.306919 up SLC25A40 55972 205930_at 2.3408363 1.2270241 2.3408363 up GTF2E1 2960 206095_s_at 3.4576106 1.7897754 3.4576106 up FUSIP1 10772 206157_at 2.4673855 1.3029832 2.4673855 up PTX3 5806 206158_s_at 2.4304378 1.2812161 2.4304378 up CNBP 7555 206308_at 2.8402193 1.5060023 2.8402193 up TRDMT1 1787 206914_at 2.1639452 1.113664 2.1639452 up CRTAM 56253 207483_s_at 2.010252 1.0073763 2.010252 up CAND1 55832 207941_s_at 2.71171 1.4392029 2.71171 up RBM39 9584 208290_s_at 2.230873 1.1576084 2.230873 up EIF5 1983 208319_s_at 2.532502 1.3405634 2.532502 up RBM3 5935 208374_s_at 2.8602982 1.5161655 2.8602982 up CAPZA1 829 208450_at 4.928022 2.3010087 4.928022 up LGALS2 3957 208700_s_at 2.137866 1.0961715 2.137866 up TKT 7086 208726_s_at 2.0053256 1.0038365 2.0053256 up EIF2S2 8894 208754_s_at 2.195824 1.1347624 2.195824 up NAP1L1 4673 208796_s_at 2.481621 1.3112828 2.481621 up CCNG1 900 208905_at 2.9724054 1.571631 2.9724054 up CYCS 54205 209067_s_at 2.633611 1.3970423 2.633611 up HNRPDL 9987 209096_at 2.2763379 1.1867148 2.2763379 up UBE2V2 7336 209115_at 2.961007 1.566088 2.961007 up UBA3 9039 209160_at 2.1788218 1.1235482 2.1788218 up AKR1C3 8644 209267_s_at 2.150532 1.1046935 2.150532 up SLC39A8 64116
  • 14. 209388_at 2.1912978 1.1317855 2.1912978 up PAPOLA 10914 209430_at 2.8247743 1.4981356 2.8247743 up BTAF1 9044 209431_s_at 2.1468358 1.1022118 2.1468358 up PATZ1 23598 209471_s_at 2.3973742 1.261455 2.3973742 up FNTA 2339 209503_s_at 2.2016048 1.1385555 2.2016048 up PSMC5 5705 209512_at 2.3055797 1.2051295 2.3055797 up HSDL2 84263 209571_at 2.1160083 1.0813452 2.1160083 up CIR 9541 209572_s_at 2.4391441 1.286375 2.4391441 up EED 8726 209628_at 3.614165 1.8536624 3.614165 up NXT2 55916 209666_s_at 2.4544377 1.2953926 2.4544377 up CHUK 1147 209688_s_at 2.4821196 1.3115726 2.4821196 up CCDC93 54520 209884_s_at 5.1350813 2.360387 5.1350813 up SLC4A7 9497 209902_at 3.8992784 1.9632071 3.8992784 up ATR 545 210042_s_at 2.165282 1.1145549 2.165282 up CTSZ 1522 210211_s_at 2.8531528 1.512557 2.8531528 up HSP90AA1 3320 210396_s_at 2.3155913 1.2113806 2.3155913 up BOLA2 /// LOC440354 /// LOC595101 440354 /// 552900 /// 595101 210691_s_at 2.3955357 1.2603483 2.3955357 up CACYBP 27101 210829_s_at 2.36575 1.2422976 2.36575 up SSBP2 23635 211070_x_at 2.0338123 1.0241866 2.0338123 up DBI 1622 211075_s_at 2.094655 1.0667127 2.094655 up CD47 961 211185_s_at 2.7502453 1.4595603 2.7502453 up SF3B1 23451 211675_s_at 5.137233 2.3609915 5.137233 up MDFIC 29969 211760_s_at 6.4439874 2.6879537 6.4439874 up VAMP4 8674 211971_s_at 2.1539035 1.1069536 2.1539035 up LRPPRC 10128 211979_at 3.6956975 1.8858467 3.6956975 up GPR107 57720 212063_at 2.0419557 1.0299516 2.0419557 up CD44 960
  • 15. 212150_at 4.317629 2.1102393 4.317629 up EFR3A 23167 212195_at 3.5542688 1.8295528 3.5542688 up IL6ST 3572 212217_at 3.2812676 1.7142533 3.2812676 up PREPL 9581 212224_at 2.4291317 1.2804407 2.4291317 up ALDH1A1 216 212245_at 2.0481803 1.0343428 2.0481803 up MCFD2 90411 212287_at 2.4092886 1.2686073 2.4092886 up SUZ12 23512 212297_at 2.1268086 1.0886903 2.1268086 up ATP13A3 79572 212410_at 2.598118 1.377467 2.598118 up EFHA1 221154 212454_x_at 2.4841983 1.3127804 2.4841983 up HNRPDL 9987 212460_at 2.1919737 1.1322304 2.1919737 up C14orf147 171546 212476_at 3.6527452 1.8689811 3.6527452 up ACAP2 23527 212508_at 2.0212047 1.0152155 2.0212047 up MOAP1 64112 212536_at 2.2477503 1.1684818 2.2477503 up ATP11B 23200 212544_at 2.1358657 1.0948209 2.1358657 up ZNHIT3 9326 212635_at 2.1601179 1.1111101 2.1601179 up TNPO1 3842 212672_at 2.725499 1.4465203 2.725499 up ATM 472 212709_at 2.0369844 1.026435 2.0369844 up NUP160 23279 212740_at 2.3148327 1.2109079 2.3148327 up PIK3R4 30849 212749_s_at 2.9869447 1.5786705 2.9869447 up RCHY1 25898 212781_at 2.5359802 1.3425435 2.5359802 up RBBP6 5930 212795_at 5.8693676 2.553205 5.8693676 up KIAA1033 23325 212847_at 3.0716612 1.6190192 3.0716612 up FUBP1 8880 212855_at 19.34377 4.273797 19.34377 up DCUN1D4 23142 212896_at 2.2307198 1.1575093 2.2307198 up SKIV2L2 23517 212984_at 6.865912 2.7794514 6.865912 up ATF2 1386 212989_at 5.181534 2.3733792 5.181534 up SGMS1 259230 213106_at 3.9553473 1.9838043 3.9553473 up ATP8A1 10396
  • 16. 100132417 /// 2209 213128_s_at 3.2219114 1.6879169 3.2219114 up UBE3A 7337 213212_x_at 3.7522979 1.9077743 3.7522979 up FLJ40113 /// LOC440295 374650 /// 440295 213246_at 2.3825607 1.252513 2.3825607 up C14orf109 26175 213251_at 3.7802198 1.9184701 3.7802198 up SMARCA5 8467 213581_at 2.1808512 1.1248913 2.1808512 up PDCD2 5134 213625_at 2.0797062 1.0563798 2.0797062 up ZKSCAN4 387032 213682_at 2.8561995 1.5140967 2.8561995 up NUP50 10762 213737_x_at 4.5911193 2.1988459 4.5911193 up GOLGA9P 283796 213786_at 3.4849036 1.8011187 3.4849036 up TAX1BP1 8887 213857_s_at 2.057008 1.0405475 2.057008 up CD47 961 213878_at 3.1062305 1.6351649 3.1062305 up PYROXD1 79912 213906_at 3.4120972 1.7706587 3.4120972 up MYBL1 4603 214141_x_at 2.4920976 1.3173605 2.4920976 up SFRS7 6432 214328_s_at 2.3417025 1.2275578 2.3417025 up HSP90AA1 3320 214363_s_at 2.9479141 1.5596945 2.9479141 up MATR3 9782 214511_x_at 2.2352204 1.1604171 2.2352204 up FCGR1B 2210 214709_s_at 3.2072523 1.6813378 3.2072523 up KTN1 3895 214790_at 2.6425781 1.4019462 2.6425781 up SENP6 26054 214960_at 2.1291225 1.090259 2.1291225 up API5 8539 215273_s_at 2.3192303 1.213646 2.3192303 up TADA3L 10474 215930_s_at 2.1854143 1.1279068 2.1854143 up CTAGE5 4253 216008_s_at 10.691497 3.418392 10.691497 up ARIH2 10425 216218_s_at 2.2233353 1.1527255 2.2233353 up PLCL2 23228 216321_s_at 3.5545704 1.8296752 3.5545704 up NR3C1 2908 216713_at 2.642402 1.40185 2.642402 up KRIT1 889 216950_s_at 2.078583 1.0556003 2.078583 up FCGR1A /// FCGR1C
  • 17. 217356_s_at 3.0944552 1.6296854 3.0944552 up PGK1 5230 217371_s_at 2.3721685 1.2462065 2.3721685 up IL15 3600 217408_at 2.2176955 1.1490613 2.2176955 up MRPS18B 28973 217758_s_at 2.5929067 1.3745703 2.5929067 up TM9SF3 56889 217800_s_at 3.3636453 1.7500256 3.3636453 up NDFIP1 80762 217848_s_at 2.1445165 1.1006523 2.1445165 up PPA1 5464 217870_s_at 3.6303937 1.860126 3.6303937 up CMPK1 51727 217956_s_at 3.1090586 1.6364778 3.1090586 up ENOPH1 58478 217957_at 2.0236645 1.0169702 2.0236645 up C16orf80 29105 218050_at 2.5442214 1.3472242 2.5442214 up UFM1 51569 218073_s_at 2.1446059 1.1007125 2.1446059 up TMEM48 55706 218098_at 3.0974994 1.631104 3.0974994 up ARFGEF2 10564 218286_s_at 2.660166 1.4115163 2.660166 up RNF7 9616 218341_at 2.027212 1.0194969 2.027212 up PPCS 79717 218375_at 2.236722 1.1613859 2.236722 up NUDT9 53343 218449_at 2.3719354 1.2460647 2.3719354 up UFSP2 55325 218490_s_at 3.7346 1.9009538 3.7346 up ZNF302 55900 218668_s_at 4.0544324 2.0195 4.0544324 up RAP2C 57826 218674_at 2.5650594 1.3589922 2.5650594 up C5orf44 80006 218679_s_at 2.005552 1.0039994 2.005552 up VPS28 51160 218723_s_at 2.0251186 1.0180064 2.0251186 up C13orf15 28984 218728_s_at 3.21045 1.6827755 3.21045 up CNIH4 29097 218842_at 2.7198107 1.4435062 2.7198107 up RPAP3 79657 219029_at 4.1824656 2.0643537 4.1824656 up C5orf28 64417 219137_s_at 2.0072687 1.0052338 2.0072687 up MFF 56947 219178_at 2.0148942 1.0107042 2.0148942 up QTRTD1 79691 219191_s_at 2.1153312 1.0808835 2.1153312 up BIN2 51411
  • 18. 219286_s_at 3.015412 1.5923551 3.015412 up RBM15 64783 219292_at 3.6521766 1.8687565 3.6521766 up THAP1 55145 219303_at 4.5703297 2.1922982 4.5703297 up RNF219 79596 219317_at 2.9965558 1.5833052 2.9965558 up POLI 11201 219439_at 2.600284 1.3786693 2.600284 up C1GALT1 56913 219534_x_at 2.1521416 1.105773 2.1521416 up CDKN1C 1028 219571_s_at 2.706211 1.4362744 2.706211 up ZNF12 7559 219620_x_at 2.0686991 1.0487238 2.0686991 up C9orf167 54863 219938_s_at 2.0293682 1.0210305 2.0293682 up PSTPIP2 9050 220132_s_at 3.7364144 1.9016545 3.7364144 up CLEC2D 29121 220219_s_at 6.0372252 2.5938857 6.0372252 up LOC100133503 /// LOC644397 /// LRRC37A /// LRRC37A2 /// LRRC37A3 /// LRRC37A4 100133503 /// 374819 /// 474170 /// 55073 /// 644397 /// 9884 220741_s_at 2.0123007 1.0088459 2.0123007 up PPA2 27068 220888_s_at 4.2497973 2.087394 4.2497973 up CASS4 57091 220954_s_at 3.10887 1.6363903 3.10887 up PILRB 29990 221014_s_at 7.3500667 2.8777573 7.3500667 up RAB33B 83452 221020_s_at 2.1128638 1.0791998 2.1128638 up SLC25A32 81034 221492_s_at 2.8898466 1.5309929 2.8898466 up ATG3 64422 221531_at 2.6816247 1.4231073 2.6816247 up WDR61 80349 221896_s_at 2.2000377 1.1375283 2.2000377 up HIGD1A 25994 222014_x_at 2.3751101 1.2479944 2.3751101 up MTO1 25821 222035_s_at 2.5385866 1.3440255 2.5385866 up PAPOLA 10914 222149_x_at 4.1617413 2.0571873 4.1617413 up GOLGA8C /// GOLGA8D /// GOLGA8E /// GOLGA8F /// GOLGA8G 100132565 /// 100132979 /// 283768 /// 390535 /// 729786 222150_s_at 2.7442076 1.4563897 2.7442076 up PION 54103 222203_s_at 2.703223 1.4346806 2.703223 up RDH14 57665
  • 19. 222233_s_at 2.0318244 1.0227757 2.0318244 up DCLRE1C 64421 222317_at 5.2990704 2.4057393 5.2990704 up PDE3B 5140 32088_at 3.568559 1.8353416 3.568559 up BLZF1 8548 36920_at 3.268764 1.7087452 3.268764 up MTM1 4534 40189_at 2.5402513 1.3449712 2.5402513 up SET 6418 64408_s_at 2.2177732 1.1491119 2.2177732 up CALML4 91860 64432_at 2.2718894 1.1838926 2.2718894 up C12orf47 51275 81737_at 3.4126477 1.7708915 3.4126477 up 222488_s_at 2.2635598 1.1785934 2.2635598 up DCTN4 51164 222552_at 2.8886023 1.5303715 2.8886023 up GOLT1B 51026 222602_at 4.9034333 2.2937922 4.9034333 up UBA6 55236 222604_at 3.4929035 1.8044268 3.4929035 up GTF3C3 9330 222637_at 2.3651495 1.2419313 2.3651495 up COMMD10 51397 222663_at 2.4941976 1.3185757 2.4941976 up RIOK2 55781 222673_x_at 3.33491 1.7376478 3.33491 up FAM122B 159090 222808_at 12.744482 3.6718009 12.744482 up ALG13 79868 222848_at 3.2602556 1.704985 3.2602556 up CENPK 64105 222849_s_at 2.0241768 1.0173354 2.0241768 up SCRN3 79634 223071_at 3.9794643 1.9925742 3.9794643 up IER3IP1 51124 223087_at 2.8826504 1.5273958 2.8826504 up ECHDC1 55862 223096_at 2.5942595 1.3753228 2.5942595 up NOP58 51602 223173_at 5.3462133 2.4185174 5.3462133 up SPNS1 83985 223187_s_at 2.238267 1.1623821 2.238267 up ORMDL1 94101 223204_at 4.7405343 2.2450497 4.7405343 up C4orf18 51313 223294_at 2.1925864 1.1326337 2.1925864 up CXorf26 51260 223310_x_at 4.2215314 2.0777664 4.2215314 up PNPLA8 50640 223444_at 3.999906 1.9999661 3.999906 up SENP7 57337
  • 20. 223590_at 2.3209178 1.2146955 2.3209178 up ZNF700 90592 224009_x_at 2.0140963 1.0101327 2.0140963 up DHRS9 10170 224319_s_at 2.2618742 1.1775187 2.2618742 up SMCR7L 54471 224436_s_at 4.226582 2.0794914 4.226582 up NIPSNAP3A 25934 224579_at 2.1896427 1.1306955 2.1896427 up SLC38A1 81539 224596_at 2.400413 1.2632827 2.400413 up SLC44A1 23446 224643_at 2.7826235 1.4764457 2.7826235 up PRRC1 133619 224660_at 2.4571977 1.2970139 2.4571977 up PIGY 84992 224662_at 2.5161862 1.3312387 2.5161862 up KIF5B 3799 224731_at 3.1694982 1.6642544 3.1694982 up HMGB1 3146 224761_at 2.3227959 1.2158624 2.3227959 up GNA13 10672 224769_at 7.762203 2.9564662 7.762203 up 224843_at 4.8239026 2.2702007 4.8239026 up SLAIN2 57606 224846_at 5.7858047 2.5325177 5.7858047 up SHKBP1 92799 224892_at 3.357924 1.7475696 3.357924 up PLDN 26258 224893_at 3.7713377 1.9150764 3.7713377 up ATL3 25923 224899_s_at 2.956156 1.5637224 2.956156 up MAGT1 84061 225022_at 2.6884332 1.4267656 2.6884332 up GOPC 57120 225053_at 2.299793 1.201504 2.299793 up CNOT7 29883 225256_at 2.1685789 1.1167499 2.1685789 up 225268_at 2.2366102 1.1613139 2.2366102 up KPNA4 3840 225290_at 6.723538 2.7492206 6.723538 up ETNK1 55500 225310_at 2.63891 1.3999422 2.63891 up RBMX 27316 225447_at 3.145636 1.6533518 3.145636 up GPD2 2820 225479_at 2.1526935 1.106143 2.1526935 up LRRC58 116064 225512_at 3.2354023 1.6939452 3.2354023 up ZBTB38 253461 225646_at 2.319081 1.2135533 2.319081 up CTSC 1075
  • 21. 225676_s_at 2.1797526 1.1241645 2.1797526 up WDSOF1 25879 225702_at 2.0809262 1.0572258 2.0809262 up C8orf76 84933 225710_at 3.8972254 1.9624474 3.8972254 up GNB4 59345 225766_s_at 3.9626026 1.9864483 3.9626026 up TNPO1 3842 225811_at 2.0801017 1.0566541 2.0801017 up C11orf58 10944 225885_at 11.29698 3.4978652 11.29698 up EEA1 8411 225890_at 2.1235287 1.0864636 2.1235287 up C20orf72 92667 225892_at 4.5099487 2.173111 4.5099487 up IREB2 3658 225904_at 3.0579312 1.612556 3.0579312 up C1orf96 126731 225919_s_at 2.9495287 1.5604844 2.9495287 up C9orf72 203228 225945_at 3.170951 1.6649156 3.170951 up ZNF655 79027 225963_at 3.080541 1.6231837 3.080541 up KLHDC5 57542 226037_s_at 2.0047486 1.0034213 2.0047486 up TAF9B 51616 226128_at 2.373134 1.2467935 2.373134 up 226259_at 2.5932388 1.374755 2.5932388 up EXOC6 54536 226276_at 3.4704342 1.7951162 3.4704342 up TMEM167A 153339 226280_at 4.043502 2.0156052 4.043502 up BNIP2 663 226335_at 3.055146 1.6112413 3.055146 up RPS6KA3 6197 226399_at 5.1917005 2.376207 5.1917005 up 226472_at 3.160472 1.66014 3.160472 up PPIL4 85313 226626_at 2.0151708 1.010902 2.0151708 up THOC2 57187 226851_at 2.17759 1.1227323 2.17759 up LYPLAL1 127018 226910_at 2.7636085 1.4665532 2.7636085 up 226924_at 2.4711177 1.3051637 2.4711177 up LOC400657 400657 226965_at 2.2714643 1.1836227 2.2714643 up FAM116A 201627 227012_at 5.088982 2.347377 5.088982 up SLC25A40 55972 227038_at 2.976962 1.5738409 2.976962 up SGMS2 166929
  • 22. 227158_at 2.2472093 1.1681346 2.2472093 up C14orf126 112487 227162_at 2.3223517 1.2155864 2.3223517 up ZBTB26 57684 227182_at 2.0196722 1.014121 2.0196722 up SUSD3 203328 227408_s_at 3.4576154 1.7897774 3.4576154 up SNX25 83891 227531_at 2.7875133 1.4789786 2.7875133 up 227565_at 2.3045657 1.2044948 2.3045657 up 227685_at 6.951317 2.7972863 6.951317 up TMF1 7110 227772_at 2.7123115 1.4395229 2.7123115 up 227796_at 2.1019468 1.0717262 2.1019468 up ZFP62 643836 227813_at 2.658994 1.4108804 2.658994 up THAP6 152815 227990_at 2.3580933 1.2376208 2.3580933 up SLU7 10569 228023_x_at 2.2881322 1.1941705 2.2881322 up AMY2B 280 228026_at 2.0628734 1.0446553 2.0628734 up RP5-1000E10.4 80143 228029_at 4.6898 2.2295263 4.6898 up ZNF721 170960 228174_at 3.2301548 1.6916033 3.2301548 up C9orf126 286205 228243_at 2.2332492 1.1591443 2.2332492 up 228254_at 3.045677 1.6067629 3.045677 up STAM2 10254 228477_at 2.779851 1.4750075 2.779851 up ARGLU1 55082 228654_at 2.0768127 1.0543711 2.0768127 up SPIN4 139886 228718_at 5.9359474 2.5694783 5.9359474 up ZNF4451710 228745_at 3.820965 1.9339371 3.820965 up SGTB 54557 228751_at 3.858551 1.9480592 3.858551 up CLK4 57396 228789_at 2.5081556 1.3266269 2.5081556 up MTMR6 9107 228822_s_at 2.757469 1.4633446 2.757469 up USP16 10600 228941_at 7.54503 2.9155266 7.54503 up ALG10B 144245 229007_at 10.436163 3.3835194 10.436163 up LOC283788 283788
  • 23. 229043_at 4.155697 2.0550904 4.155697 up PAPD5 64282 229194_at 4.5393343 2.1824808 4.5393343 up PCGF5 84333 229303_at 2.2110631 1.1447402 2.2110631 up 229383_at 2.2578793 1.1749684 2.2578793 up 229391_s_at 2.7314146 1.4496483 2.7314146 up FAM26F 441168 229431_at 2.0836356 1.059103 2.0836356 up RFXAP 5994 229436_x_at 2.1641474 1.1137987 2.1641474 up BRCC3 79184 229531_at 2.4246862 1.277798 2.4246862 up 229778_at 16.035036 4.0031557 16.035036 up C12orf39 80763 229804_x_at 4.799342 2.2628367 4.799342 up CBWD1 /// CBW D2 /// CBWD3 /// CBWD6 150472 /// 445571 /// 55871 /// 644019 229937_x_at 2.2331238 1.1590632 2.2331238 up LILRB1 10859 230006_s_at 7.4277635 2.892928 7.4277635 up SVIP 258010 230029_x_at 4.3121986 2.1084237 4.3121986 up UBR3 130507 230078_at 3.0928473 1.6289356 3.0928473 up RAPGEF6 51735 230379_x_at 2.072186 1.0511535 2.072186 up C2orf56 55471 230383_x_at 2.1566954 1.1088225 2.1566954 up 230416_at 5.4908514 2.4570298 5.4908514 up 231896_s_at 2.8662255 1.5191522 2.8662255 up DENR 8562 232007_at 3.8566852 1.9473614 3.8566852 up AGPAT5 55326 232024_at 3.2778392 1.7127451 3.2778392 up GIMAP2 26157 232297_at 2.8058367 1.488431 2.8058367 up 232515_at 2.7987568 1.4847862 2.7987568 up 232524_x_at 2.056318 1.0400635 2.056318 up ANAPC4 29945 233282_at 5.7810507 2.5313318 5.7810507 up 233500_x_at 2.898574 1.5353434 2.898574 up CLEC2D 29121 233665_x_at 2.4454756 1.290115 2.4454756 up MTO1 25821 37
  • 24. 234304_s_at 2.8669405 1.5195119 2.8669405 up IPO11 51194 235158_at 3.0380504 1.6031458 3.0380504 up TMEM209 84928 235170_at 2.9216216 1.5467693 2.9216216 up ZNF92 168374 235198_at 2.4675722 1.3030922 2.4675722 up OSTM1 28962 235274_at 4.2687597 2.093817 4.2687597 up 235276_at 3.4136002 1.7712941 3.4136002 up EPSTI1 94240 235535_x_at 4.334274 2.1157904 4.334274 up FRG1 /// FRG1B /// LOC100134091 /// LOC642236 100134091 /// 2483 /// 284802 /// 642236 235611_at 4.4122415 2.1415117 4.4122415 up 235620_x_at 3.2163763 1.6854362 3.2163763 up ZMYM5 9205 235798_at 6.4243717 2.6835554 6.4243717 up TMEM170B 100113407 236166_at 2.3543537 1.235331 2.3543537 up LOC285147 285147 236203_at 2.9139893 1.5429956 2.9139893 up HLA-DQA1 3117 236539_at 4.11302 2.040198 4.11302 up PTPN22 26191 237289_at 2.2961657 1.1992267 2.2961657 up CREB1 1385 239482_x_at 3.2488017 1.6999077 3.2488017 up ZNF708 7562 242136_x_at 3.0351825 1.6017833 3.0351825 up MGC70870 403340 242263_at 3.4334872 1.7796745 3.4334872 up TMED5 50999 242521_at 2.1958516 1.1347805 2.1958516 up 242593_at 2.1079285 1.0758259 2.1079285 up 242648_at 3.4477534 1.7856566 3.4477534 up KLHL8 57563 244663_at 2.0190845 1.0137013 2.0190845 up 1552291_at 2.4562533 1.2964593 2.4562533 up PIGX 54965 1552330_at 2.2051635 1.1408856 2.2051635 up MGC16385 92806 1552703_s_at 2.0806806 1.0570556 2.0806806 up CARD16 ///CASP1 114769 /// 834 1567214_a_at 2.7961278 1.4834303 2.7961278 up PNN 5411 1553043_a_at 2.1436055 1.1000395 2.1436055 up CD300LF 146722 38
  • 25. 1553979_at 3.4571354 1.7895771 3.4571354 up 1554021_a_at 3.5871427 1.8428352 3.5871427 up ZNF12 7559 1554606_at 2.7443366 1.4564575 2.7443366 up CEP120 153241 1554678_s_at 3.6869023 1.8824092 3.6869023 up HNRPDL 9987 1555762_s_at 3.8031762 1.9272047 3.8031762 up RBM15 64783 1555780_a_at 3.8633564 1.9498547 3.8633564 up RHEB 6009 1556285_s_at 2.3047078 1.2045838 2.3047078 up PPA2 27068 1557066_at 2.8619654 1.5170063 2.8619654 up LUC7L 55692 1557915_s_at 2.330413 1.2205857 2.330413 up GSTO1 9446 1558136_s_at 2.0875757 1.0618285 2.0875757 up TAF11 6882 1565162_s_at 3.3466935 1.7427365 3.3466935 up MGST1 4257 1568592_at 2.5909886 1.3735027 2.5909886 up TRIM69 140691 1568955_at 5.440377 2.4437068 5.440377 up SRGAP2P1 653464 1569139_s_at 2.394263 1.2595817 2.394263 up FAM53A 152877 39
  • 26. Down Regulated Genes # Notes : DOWN - Fold change([Test] vs [Control]) #Only down-regulated entities from parent entity list : #Fold change >= 2.0 #Entity List : T Test unpaired p-value P <= 0.05 #Interpretation : New Parameter #Experiment : MAS5_without3 #Fold-Change cut-off : 2.0 #Pairing option : All against single condition #Condition pairs : #[Test] vs [Control] #Minimum number of pairs:1 out of 1 condition pairs. # Technology : Affymetrix.GeneChip.HG-U133_Plus_2 # Owner : gxuser # Created On : Thu Dec 15 21:01:04 PST 2011 179_at -3.1323285 -1.64723553.1323285 down PMS2L11 441263 200844_s_at -2.506923 -1.3259176 2.506923 down PRDX6 9588 200908_s_at -4.648077 -2.216634 4.648077 down RPLP2 6181 201059_at -2.2916496 -1.1963865 2.2916496 down CTTN 2017 202028_s_at -4.653457 -2.218303 4.653457 down RPL38 6169 203662_s_at -3.1262074 -1.6444135 3.1262074 down TMOD1 7111 203899_s_at -2.6229813 -1.3912076 2.6229813 down CRCP 27297 205170_at -2.4707286 -1.3049365 2.4707286 down STAT2 6773 206438_x_at -2.113238 -1.0794554 2.113238 down TCTN2 79867 207688_s_at -3.585278 -1.842085 3.585278 down 209169_at -11.641426 -3.5411959 11.641426 down GPM6B 2824 Probe set ID Fold change([T est] vs [Control]) Log fold change([ Test] vs [control]) Absolute fold change([T est] vs [control]) Regulat ion ([Test] vs [Contro l]) Gene symbol Entrez Gene
  • 27. 210354_at -2.5150347 -1.3305783 2.5150347 down IFNG 3458 210500_at -2.387605 -1.2555641 2.387605 down 210556_at -2.075008 -1.0531169 2.075008 down NFATC3 4775 210969_at -2.9719222 -1.5713964 2.9719222 down PKN2 5586 212383_at -2.119043 -1.083413 2.119043 down ATP6V0A1 535 212427_at -2.4400408 -1.2869053 2.4400408 down KIAA0368 23392 212468_at -4.21961 -2.0771098 4.21961 down SPAG9 9043 212679_at -2.6407435 -1.4009442 2.6407435 down TBL2 26608 213274_s_at -3.5446072 -1.8256258 3.5446072 down CTSB 1508 213350_at -6.519015 -2.704654 6.519015 down RPS11 6205 213621_s_at -2.3890533 -1.2564391 2.3890533 down GUK1 2987 213650_at -3.088151 -1.6267433 3.088151 down GOLGA8A /// GOLGA8B 23015 /// 440270 213810_s_at -2.9348311 -1.5532775 2.9348311 down AKIRIN2 55122 213813_x_at -4.6127014 -2.205612 4.6127014 down 214000_s_at -10.277619 -3.3614342 10.277619 down RGS10 6001 214041_x_at -7.1359153 -2.8350985 7.1359153 down RPL37A 6168 214149_s_at -4.8733435 -2.2849119 4.8733435 down ATP6V0E1 8992 214284_s_at -2.3637133 -1.241055 2.3637133 down FGF18 8817 214322_at -2.3460717 -1.2302471 2.3460717 down CAMK2G 818 215040_at -2.1654541 -1.1146697 2.1654541 down RNASEH2B 79621 215175_at -2.9989753 -1.5844697 2.9989753 down PCNX 22990 215250_at -2.265798 -1.1800193 2.265798 down TMEM111 55831 215525_at -2.5328817 -1.3407797 2.5328817 down 216183_at -2.1992989 -1.1370436 2.1992989 down TGM2 7052 216263_s_at -2.1142485 -1.080145 2.1142485 down NGDN 25983 41
  • 28. 216540_at -2.0514538 -1.0366467 2.0514538 down TRD@ 6964 216740_at -2.3423767 -1.2279731 2.3423767 down 216751_at -2.3378737 -1.225197 2.3378737 down 217053_x_at -2.3310647 -1.2209891 2.3310647 down ETV1 2115 217362_x_at -2.4369843 -1.285097 2.4369843 down HLA-DRB6 3128 217383_at -2.2445076 -1.1663989 2.2445076 down PGK1 5230 217692_at -3.2905254 -1.718318 3.2905254 down MAGOH2 548332 218173_s_at -2.3560247 -1.2363547 2.3560247 down WHSC1L1 54904 218448_at -2.4195685 -1.2747499 2.4195685 down C20orf11 54994 218595_s_at -2.2403162 -1.1637024 2.2403162 down HEATR1 55127 221943_x_at -4.3655314 -2.1261573 4.3655314 down RPL38 6169 33768_at -2.112162 -1.0787206 2.112162 down DMWD 1762 35201_at -2.2332401 -1.1591383 2.2332401 down HNRNPL 3191 36554_at -2.2925758 -1.1969695 2.2925758 down ASMTL 8623 36888_at -2.4099982 -1.2690321 2.4099982 down HAUS5 23354 223052_x_at -3.6137075 -1.8534797 3.6137075 down 223430_at -2.264384 -1.1791186 2.264384 down SIK2 23235 223498_at -2.1271095 -1.0888942 2.1271095 down CYTSB 92521 224321_at -7.039534 -2.81548 7.039534 down TMEFF2 23671 224346_at -4.104861 -2.0373333 4.104861 down 224375_at -2.9156728 -1.5438288 2.9156728 down 225270_at -2.1064858 -1.0748382 2.1064858 down NEO1 4756 226412_at -3.0519266 -1.6097202 3.0519266 down SFRS18 25957 226824_at -2.8627605 -1.5174071 2.8627605 down CPXM2 119587 226928_x_at -4.2338843 -2.081982 4.2338843 down SLC25A37 51312 227092_at -2.2448487 -1.1666182 2.2448487 down 227098_at -2.129652 -1.0906177 2.129652 down DUSP18 150290 42
  • 29. 227513_s_at -2.5867555 -1.3711437 2.5867555 down LRRFIP1 9208 227629_at -2.6420622 -1.4016644 2.6420622 down PRLR 5618 227890_at -2.371096 -1.245554 2.371096 down TMEM198 130612 228309_at -2.5875382 -1.3715802 2.5875382 down 228500_at -2.0811968 -1.0574135 2.0811968 down THAP8 199745 228982_s_at -3.37386 -1.7544 3.37386 down USP42 84132 229420_at -4.6825643 -2.2272987 4.6825643 down 229515_at -2.1758888 -1.1216048 2.1758888 down PAWR 5074 229696_at -2.7418253 -1.4551367 2.7418253 down FECH 2235 229803_s_at -2.3430557 -1.2283913 2.3430557 down 229987_at -2.4018304 -1.2641343 2.4018304 down 230213_at -2.3014808 -1.2025623 2.3014808 down C19orf43 79002 230533_at -2.781146 -1.4756795 2.781146 down ZMYND8 23613 230535_s_at -3.6763089 -1.878258 3.6763089 down 230888_at -2.8701932 -1.5211478 2.8701932 down WDR91 29062 230942_at -2.064273 -1.0456339 2.064273 down CMTM5 116173 231061_at -2.8853667 -1.5287547 2.8853667 down 231165_at -2.4704857 -1.3047947 2.4704857 down 232844_at -4.792257 -2.2607052 4.792257 down IFT140 9742 232896_at -3.2710025 -1.7097329 3.2710025 down ERBB2IP 55914 233008_at -2.0559719 -1.0398206 2.0559719 down FLJ12825 440101 233204_at -3.7229543 -1.8964479 3.7229543 down LOC728153 728153 233627_at -2.2108004 -1.1445688 2.2108004 down 234004_at -2.3905282 -1.2573295 2.3905282 down TTC28 23331 234033_at -2.784868 -1.4776089 2.784868 down 234157_at -2.1415348 -1.0986451 2.1415348 down 234255_at -4.2990203 -2.104008 4.2990203 down 43
  • 30. 234464_s_at -4.215364 -2.0756571 4.215364 down EME1 146956 234471_s_at -2.3569345 -1.2369117 2.3569345 down NCOA5 57727 235452_at -2.1045704 -1.0735258 2.1045704 down 235521_at -3.2826107 -1.7148436 3.2826107 down HOXA3 3200 235679_at -2.0418518 -1.0298781 2.0418518 down 236043_at -2.9541938 -1.5627645 2.9541938 down LOC100130175 100130175 236240_at -2.1068819 -1.0751094 2.1068819 down C4orf29 80167 236424_at -2.2730396 -1.1846228 2.2730396 down CEP250 11190 237181_at -3.4688492 -1.7944571 3.4688492 down 238499_at -2.8312345 -1.5014312 2.8312345 down SLC45A3 85414 238619_at -3.7922478 -1.9230533 3.7922478 down 238893_at -2.3265424 -1.2181875 2.3265424 down LOC338758 338758 239058_at -2.0700247 -1.0496479 2.0700247 down 239151_at -2.3139002 -1.2103267 2.3139002 down RP11-144G6.7 399753 239452_at -2.2393954 -1.1631093 2.2393954 down 239960_x_at -2.5935893 -1.37495 2.5935893 down LYRM7 90624 240159_at -3.0929213 -1.6289701 3.0929213 down SLC15A2 6565 240170_at -2.3162699 -1.2118033 2.3162699 down 240263_at -4.2400484 -2.0840807 4.2400484 down 240723_at -3.7558036 -1.9091216 3.7558036 down 241294_at -2.8465924 -1.509236 2.8465924 down 241391_at -5.7314973 -2.518912 5.7314973 down 241617_x_at -5.9179015 -2.5650856 5.9179015 down 241644_at -2.165558 -1.1147388 2.165558 down BOLA2 552900 241695_s_at -2.1880767 -1.1296633 2.1880767 down 241755_at -3.8008735 -1.926331 3.8008735 down UQCRC2 7385 44
  • 31. 241773_at -2.5461023 -1.3482903 2.5461023 down 241832_at -2.5366778 -1.3429403 2.5366778 down FAM98A 25940 241947_at -2.7087164 -1.4376093 2.7087164 down LOC100233209 100233209 242034_at -2.0661113 -1.046918 2.0661113 down FBXL17 64839 242117_at -3.3378801 -1.7389321 3.3378801 down 242134_at -2.726714 -1.4471633 2.726714 down 242693_at -4.0276437 -2.009936 4.0276437 down 242755_at -20.845972 -4.3816967 20.845972 down 242768_at -2.4577973 -1.2973659 2.4577973 down 242993_at -2.5750735 -1.3646137 2.5750735 down 243439_at -2.3151264 -1.211091 2.3151264 down ZNF418 147686 243515_at -3.097059 -1.6308988 3.097059 down 243527_at -2.0916805 -1.0646625 2.0916805 down 243533_x_at -4.117145 -2.0416443 4.117145 down 243939_at -2.5393791 -1.3444757 2.5393791 down 243966_at -2.4216232 -1.2759744 2.4216232 down 244021_at -2.2777889 -1.187634 2.2777889 down 244096_at -4.7029247 -2.2335582 4.7029247 down 244674_at -2.858586 -1.5153017 2.858586 down 244766_at -3.8125901 -1.9307715 3.8125901 down LOC440354 /// LOC595101 /// LOC641298 /// LOC728423 /// LOC729513 /// SMG1 23049 /// 440354 /// 595101 /// 641298 /// 728423 /// 729513 1552829_at -2.8479142 -1.5099057 2.8479142 down 1553575_at -3.3971965 -1.7643447 3.3971965 down ND6 4541 1554597_at -2.2907481 -1.1958188 2.2907481 down 1554852_a_at -2.0540009 -1.0384368 2.0540009 down KIAA1257 57501 1556373_a_at -3.2720826 -1.7102091 3.2720826 down 45
  • 32. 1556761_at -3.7914577 -1.9227526 3.7914577 down 1557626_at -2.049583 -1.0353304 2.049583 down 1557814_a_at -2.1935897 -1.1332937 2.1935897 down 1558430_at -2.5522208 -1.3517531 2.5522208 down 1558685_a_at -2.2272408 -1.1552576 2.2272408 down LOC158960 158960 1558793_at -2.5977046 -1.3772374 2.5977046 down 1559119_at -3.6324193 -1.8609308 3.6324193 down 1559190_s_at -2.3350012 -1.2234234 2.3350012 down RDH13 112724 1559566_at -2.372706 -1.2465333 2.372706 down FBXO42 54455 1559658_at -2.5461755 -1.3483318 2.5461755 down C15orf29 79768 1559765_a_at -2.006444 -1.0046409 2.006444 down LOC286254 286254 1559910_at -2.3306189 -1.220713 2.3306189 down 1560264_at -3.5281072 -1.8188944 3.5281072 down 1560396_at -2.3742745 -1.2474867 2.3742745 down KLHL6 89857 1560480_at -2.0777316 -1.0550092 2.0777316 down 1562069_at -2.0159624 -1.0114688 2.0159624 down 1562289_at -2.0202494 -1.0145334 2.0202494 down 1562463_at -2.1066792 -1.0749706 2.1066792 down 1563781_at -2.338762 -1.2257451 2.338762 down LOC285949 285949 1565535_x_at -2.2941356 -1.1979507 2.2941356 down 1565868_at -2.218658 -1.1496873 2.218658 down CD44 960 1570251_at -3.4866338 -1.8018348 3.4866338 down HECTD1 25831 1570496_at -2.3388374 -1.2257916 2.3388374 down 1570552_at -2.3848288 -1.2538857 2.3848288 down C18orf50 619463